data_7BO4 # _model_server_result.job_id rh7I4tIVuK1cBGTwgamXrQ _model_server_result.datetime_utc '2024-11-27 22:03:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bo4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":602}' # _entry.id 7BO4 # _exptl.entry_id 7BO4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BO4 _cell.length_a 155.3 _cell.length_b 155.3 _cell.length_c 128.06 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BO4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 530 NAG 2 n B FUC 2 B 2 FUC A 531 FUC 3 n C NAG 1 C 1 NAG A 533 NAG 3 n C NAG 2 C 2 NAG A 546 NAG 3 n C FUC 3 C 3 FUC A 534 FUC 3 n D NAG 1 D 1 NAG A 535 NAG 3 n D NAG 2 D 2 NAG A 536 NAG 3 n D FUC 3 D 3 FUC A 537 FUC 2 n E NAG 1 E 1 NAG A 539 NAG 2 n E FUC 2 E 2 FUC A 540 FUC 3 n F NAG 1 F 1 NAG A 541 NAG 3 n F NAG 2 F 2 NAG A 542 NAG 3 n F FUC 3 F 3 FUC A 543 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 A ND2 ASN 256 A ASN 256 1_555 G C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale6 A ND2 ASN 485 A ASN 485 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale9 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale12 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale14 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 305 n n O1 C6 MES sing 306 n n C2 C3 MES sing 307 n n C2 H21 MES sing 308 n n C2 H22 MES sing 309 n n C3 N4 MES sing 310 n n C3 H31 MES sing 311 n n C3 H32 MES sing 312 n n N4 C5 MES sing 313 n n N4 C7 MES sing 314 n n N4 HN4 MES sing 315 n n C5 C6 MES sing 316 n n C5 H51 MES sing 317 n n C5 H52 MES sing 318 n n C6 H61 MES sing 319 n n C6 H62 MES sing 320 n n C7 C8 MES sing 321 n n C7 H71 MES sing 322 n n C7 H72 MES sing 323 n n C8 S MES sing 324 n n C8 H81 MES sing 325 n n C8 H82 MES sing 326 n n S O1S MES doub 327 n n S O2S MES doub 328 n n S O3S MES sing 329 n n # _atom_sites.entry_id 7BO4 _atom_sites.fract_transf_matrix[1][1] 0.006439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 601 532 NAG NAG . H 5 MES A 1 602 538 MES MES . I 6 MOH A 1 603 544 MOH MOH . J 7 A87 A 1 604 545 A87 A87 . K 8 SIA A 1 605 547 SIA SIA . L 9 SO4 A 1 606 1 SO4 SO4 . M 9 SO4 A 1 607 2 SO4 SO4 . N 9 SO4 A 1 608 3 SO4 SO4 . O 9 SO4 A 1 609 4 SO4 SO4 . P 10 HOH A 1 701 46 HOH HOH . P 10 HOH A 2 702 51 HOH HOH . P 10 HOH A 3 703 1 HOH HOH . P 10 HOH A 4 704 12 HOH HOH . P 10 HOH A 5 705 63 HOH HOH . P 10 HOH A 6 706 62 HOH HOH . P 10 HOH A 7 707 60 HOH HOH . P 10 HOH A 8 708 75 HOH HOH . P 10 HOH A 9 709 45 HOH HOH . P 10 HOH A 10 710 32 HOH HOH . P 10 HOH A 11 711 54 HOH HOH . P 10 HOH A 12 712 88 HOH HOH . P 10 HOH A 13 713 3 HOH HOH . P 10 HOH A 14 714 70 HOH HOH . P 10 HOH A 15 715 2 HOH HOH . P 10 HOH A 16 716 19 HOH HOH . P 10 HOH A 17 717 39 HOH HOH . P 10 HOH A 18 718 50 HOH HOH . P 10 HOH A 19 719 11 HOH HOH . P 10 HOH A 20 720 56 HOH HOH . P 10 HOH A 21 721 24 HOH HOH . P 10 HOH A 22 722 29 HOH HOH . P 10 HOH A 23 723 14 HOH HOH . P 10 HOH A 24 724 52 HOH HOH . P 10 HOH A 25 725 25 HOH HOH . P 10 HOH A 26 726 16 HOH HOH . P 10 HOH A 27 727 18 HOH HOH . P 10 HOH A 28 728 36 HOH HOH . P 10 HOH A 29 729 89 HOH HOH . P 10 HOH A 30 730 28 HOH HOH . P 10 HOH A 31 731 73 HOH HOH . P 10 HOH A 32 732 22 HOH HOH . P 10 HOH A 33 733 92 HOH HOH . P 10 HOH A 34 734 13 HOH HOH . P 10 HOH A 35 735 72 HOH HOH . P 10 HOH A 36 736 93 HOH HOH . P 10 HOH A 37 737 40 HOH HOH . P 10 HOH A 38 738 78 HOH HOH . P 10 HOH A 39 739 41 HOH HOH . P 10 HOH A 40 740 20 HOH HOH . P 10 HOH A 41 741 7 HOH HOH . P 10 HOH A 42 742 31 HOH HOH . P 10 HOH A 43 743 58 HOH HOH . P 10 HOH A 44 744 42 HOH HOH . P 10 HOH A 45 745 95 HOH HOH . P 10 HOH A 46 746 23 HOH HOH . P 10 HOH A 47 747 76 HOH HOH . P 10 HOH A 48 748 38 HOH HOH . P 10 HOH A 49 749 68 HOH HOH . P 10 HOH A 50 750 37 HOH HOH . P 10 HOH A 51 751 71 HOH HOH . P 10 HOH A 52 752 30 HOH HOH . P 10 HOH A 53 753 34 HOH HOH . P 10 HOH A 54 754 47 HOH HOH . P 10 HOH A 55 755 27 HOH HOH . P 10 HOH A 56 756 26 HOH HOH . P 10 HOH A 57 757 21 HOH HOH . P 10 HOH A 58 758 33 HOH HOH . P 10 HOH A 59 759 69 HOH HOH . P 10 HOH A 60 760 77 HOH HOH . P 10 HOH A 61 761 17 HOH HOH . P 10 HOH A 62 762 6 HOH HOH . P 10 HOH A 63 763 61 HOH HOH . P 10 HOH A 64 764 15 HOH HOH . P 10 HOH A 65 765 4 HOH HOH . P 10 HOH A 66 766 57 HOH HOH . P 10 HOH A 67 767 91 HOH HOH . P 10 HOH A 68 768 90 HOH HOH . P 10 HOH A 69 769 74 HOH HOH . P 10 HOH A 70 770 94 HOH HOH . P 10 HOH A 71 771 87 HOH HOH . P 10 HOH A 72 772 43 HOH HOH . P 10 HOH A 73 773 59 HOH HOH . P 10 HOH A 74 774 8 HOH HOH . P 10 HOH A 75 775 96 HOH HOH . P 10 HOH A 76 776 9 HOH HOH . P 10 HOH A 77 777 80 HOH HOH . P 10 HOH A 78 778 66 HOH HOH . P 10 HOH A 79 779 79 HOH HOH . P 10 HOH A 80 780 44 HOH HOH . P 10 HOH A 81 781 84 HOH HOH . P 10 HOH A 82 782 53 HOH HOH . P 10 HOH A 83 783 81 HOH HOH . P 10 HOH A 84 784 64 HOH HOH . P 10 HOH A 85 785 49 HOH HOH . P 10 HOH A 86 786 48 HOH HOH . P 10 HOH A 87 787 83 HOH HOH . P 10 HOH A 88 788 86 HOH HOH . P 10 HOH A 89 789 35 HOH HOH . P 10 HOH A 90 790 55 HOH HOH . P 10 HOH A 91 791 85 HOH HOH . P 10 HOH A 92 792 5 HOH HOH . P 10 HOH A 93 793 82 HOH HOH . P 10 HOH A 94 794 65 HOH HOH . P 10 HOH A 95 795 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . H 5 15.734 28.701 62.76 0.74 62.66 ? O1 MES 602 A 1 HETATM 2 C C2 MES . . . H 5 15.814 29.971 63.425 0.74 73.12 ? C2 MES 602 A 1 HETATM 3 C C3 MES . . . H 5 16.365 31.092 62.541 0.74 62.51 ? C3 MES 602 A 1 HETATM 4 N N4 MES . . . H 5 17.593 30.58 61.947 0.74 71.53 ? N4 MES 602 A 1 HETATM 5 C C5 MES . . . H 5 17.401 29.419 61.105 0.74 63.18 ? C5 MES 602 A 1 HETATM 6 C C6 MES . . . H 5 16.904 28.326 62.039 0.74 61.47 ? C6 MES 602 A 1 HETATM 7 C C7 MES . . . H 5 18.604 31.566 61.551 0.74 72.92 ? C7 MES 602 A 1 HETATM 8 C C8 MES . . . H 5 19.77 30.844 60.872 0.74 62.39 ? C8 MES 602 A 1 HETATM 9 S S MES . . . H 5 21.005 31.932 60.56 0.74 81.1 ? S MES 602 A 1 HETATM 10 O O1S MES . . . H 5 21.988 31.321 59.635 0.74 62.61 ? O1S MES 602 A 1 HETATM 11 O O2S MES . . . H 5 20.477 33.175 59.936 0.74 74.26 ? O2S MES 602 A 1 HETATM 12 O O3S MES . . . H 5 21.693 32.298 61.822 0.74 80.54 ? O3S MES 602 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #