data_7BO7 # _model_server_result.job_id W2_XXzpeIY28fKTazUEXvg _model_server_result.datetime_utc '2025-07-07 17:21:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bo7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 7BO7 # _exptl.entry_id 7BO7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.428 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R},3~{R},4~{S},5~{R})-2-[(4~{a}~{S},7~{a}~{S})-4-azanyl-1,4,4~{a},7~{a}-tetrahydropyrrolo[2,3-d]pyrimidin-7-yl]-5-(quinolin-7-yloxymethyl)oxolane-3,4-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BO7 _cell.length_a 101.19 _cell.length_b 137.25 _cell.length_c 179.37 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BO7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H23 N5 O4' _chem_comp.formula_weight 397.428 _chem_comp.id U6K _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R},3~{R},4~{S},5~{R})-2-[(4~{a}~{S},7~{a}~{S})-4-azanyl-1,4,4~{a},7~{a}-tetrahydropyrrolo[2,3-d]pyrimidin-7-yl]-5-(quinolin-7-yloxymethyl)oxolane-3,4-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C16 U6K doub 416 n y C15 C14 U6K sing 417 n y C16 N5 U6K sing 418 n y C14 C13 U6K doub 419 n y N5 C17 U6K doub 420 n y C13 C17 U6K sing 421 n y C13 C12 U6K sing 422 n y C17 C18 U6K sing 423 n y C12 C11 U6K doub 424 n y C18 C10 U6K doub 425 n y C11 C10 U6K sing 426 n y C10 O2 U6K sing 427 n n O2 C9 U6K sing 428 n n C9 C8 U6K sing 429 n n O1 C8 U6K sing 430 n n O1 C7 U6K sing 431 n n C8 C19 U6K sing 432 n n C5 C4 U6K sing 433 n n C5 C6 U6K doub 434 n n C4 C3 U6K sing 435 n n C4 C1 U6K sing 436 n n C6 N4 U6K sing 437 n n N1 C1 U6K sing 438 n n N4 C3 U6K sing 439 n n N4 C7 U6K sing 440 n n C3 N3 U6K sing 441 n n C7 C20 U6K sing 442 n n C1 N2 U6K sing 443 n n C19 C20 U6K sing 444 n n C19 O3 U6K sing 445 n n N2 C2 U6K doub 446 n n C20 O4 U6K sing 447 n n N3 C2 U6K sing 448 n n C1 H22 U6K sing 449 n n C2 H3 U6K sing 450 n n C3 H4 U6K sing 451 n n C4 H5 U6K sing 452 n n C5 H6 U6K sing 453 n n C6 H7 U6K sing 454 n n C8 H9 U6K sing 455 n n C11 H12 U6K sing 456 n n C12 H13 U6K sing 457 n n C14 H14 U6K sing 458 n n C15 H15 U6K sing 459 n n C16 H16 U6K sing 460 n n C20 H20 U6K sing 461 n n N1 H23 U6K sing 462 n n N1 H2 U6K sing 463 n n N3 H24 U6K sing 464 n n C7 H8 U6K sing 465 n n C9 H11 U6K sing 466 n n C9 H10 U6K sing 467 n n C18 H17 U6K sing 468 n n C19 H18 U6K sing 469 n n O3 H19 U6K sing 470 n n O4 H21 U6K sing 471 n n # _atom_sites.entry_id 7BO7 _atom_sites.fract_transf_matrix[1][1] 0.009882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007286 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005575 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 U6K AAA 1 701 700 U6K 437 . D 4 EPE AAA 1 702 800 EPE EPE . E 5 EDO AAA 1 703 801 EDO EDO . F 5 EDO AAA 1 704 802 EDO EDO . G 5 EDO AAA 1 705 803 EDO EDO . H 6 PEG AAA 1 706 804 PEG PEG . I 7 HOH AAA 1 801 36 HOH HOH . I 7 HOH AAA 2 802 9 HOH HOH . I 7 HOH AAA 3 803 2 HOH HOH . I 7 HOH AAA 4 804 17 HOH HOH . I 7 HOH AAA 5 805 6 HOH HOH . I 7 HOH AAA 6 806 43 HOH HOH . I 7 HOH AAA 7 807 39 HOH HOH . I 7 HOH AAA 8 808 14 HOH HOH . I 7 HOH AAA 9 809 41 HOH HOH . I 7 HOH AAA 10 810 50 HOH HOH . I 7 HOH AAA 11 811 38 HOH HOH . I 7 HOH AAA 12 812 12 HOH HOH . I 7 HOH AAA 13 813 5 HOH HOH . I 7 HOH AAA 14 814 19 HOH HOH . I 7 HOH AAA 15 815 8 HOH HOH . I 7 HOH AAA 16 816 7 HOH HOH . I 7 HOH AAA 17 817 44 HOH HOH . I 7 HOH AAA 18 818 47 HOH HOH . I 7 HOH AAA 19 819 1 HOH HOH . I 7 HOH AAA 20 820 37 HOH HOH . I 7 HOH AAA 21 821 40 HOH HOH . I 7 HOH AAA 22 822 15 HOH HOH . I 7 HOH AAA 23 823 11 HOH HOH . I 7 HOH AAA 24 824 31 HOH HOH . I 7 HOH AAA 25 825 10 HOH HOH . I 7 HOH AAA 26 826 18 HOH HOH . I 7 HOH AAA 27 827 42 HOH HOH . I 7 HOH AAA 28 828 49 HOH HOH . I 7 HOH AAA 29 829 30 HOH HOH . I 7 HOH AAA 30 830 20 HOH HOH . I 7 HOH AAA 31 831 32 HOH HOH . I 7 HOH AAA 32 832 3 HOH HOH . I 7 HOH AAA 33 833 52 HOH HOH . I 7 HOH AAA 34 834 25 HOH HOH . I 7 HOH AAA 35 835 23 HOH HOH . I 7 HOH AAA 36 836 51 HOH HOH . I 7 HOH AAA 37 837 33 HOH HOH . I 7 HOH AAA 38 838 21 HOH HOH . I 7 HOH AAA 39 839 22 HOH HOH . I 7 HOH AAA 40 840 53 HOH HOH . J 7 HOH BBB 1 401 46 HOH HOH . J 7 HOH BBB 2 402 34 HOH HOH . J 7 HOH BBB 3 403 35 HOH HOH . J 7 HOH BBB 4 404 45 HOH HOH . J 7 HOH BBB 5 405 29 HOH HOH . J 7 HOH BBB 6 406 24 HOH HOH . J 7 HOH BBB 7 407 13 HOH HOH . J 7 HOH BBB 8 408 48 HOH HOH . J 7 HOH BBB 9 409 26 HOH HOH . J 7 HOH BBB 10 410 16 HOH HOH . J 7 HOH BBB 11 411 28 HOH HOH . J 7 HOH BBB 12 412 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U6K . . . C 3 -37.294 -34.275 -3.544 1 51.62 0 C1 U6K 701 AAA 1 HETATM 2 C C2 U6K . . . C 3 -35.543 -33.231 -2.44 1 56.24 0 C2 U6K 701 AAA 1 HETATM 3 C C3 U6K . . . C 3 -35.059 -35.165 -3.44 1 50.63 0 C3 U6K 701 AAA 1 HETATM 4 C C4 U6K . . . C 3 -36.388 -35.304 -3.901 1 48.51 0 C4 U6K 701 AAA 1 HETATM 5 C C5 U6K . . . C 3 -36.441 -36.546 -4.614 1 49.72 0 C5 U6K 701 AAA 1 HETATM 6 C C6 U6K . . . C 3 -35.198 -37.106 -4.545 1 54.54 0 C6 U6K 701 AAA 1 HETATM 7 C C8 U6K . . . C 3 -31.168 -37.517 -4.757 1 52.36 0 C8 U6K 701 AAA 1 HETATM 8 C C11 U6K . . . C 3 -28.263 -40.05 -7.277 1 49.81 0 C11 U6K 701 AAA 1 HETATM 9 C C12 U6K . . . C 3 -27.814 -41.025 -8.109 1 52.7 0 C12 U6K 701 AAA 1 HETATM 10 C C13 U6K . . . C 3 -28.709 -41.762 -8.918 1 49.3 0 C13 U6K 701 AAA 1 HETATM 11 C C14 U6K . . . C 3 -28.273 -42.775 -9.797 1 50.94 0 C14 U6K 701 AAA 1 HETATM 12 C C15 U6K . . . C 3 -29.185 -43.458 -10.528 1 51.09 0 C15 U6K 701 AAA 1 HETATM 13 C C16 U6K . . . C 3 -30.543 -43.132 -10.38 1 50.39 0 C16 U6K 701 AAA 1 HETATM 14 C C17 U6K . . . C 3 -30.091 -41.488 -8.839 1 49.51 0 C17 U6K 701 AAA 1 HETATM 15 C C20 U6K . . . C 3 -32.539 -37.708 -2.775 1 54.99 0 C20 U6K 701 AAA 1 HETATM 16 N N1 U6K . . . C 3 -38.585 -34.274 -3.915 1 55.21 0 N1 U6K 701 AAA 1 HETATM 17 N N2 U6K . . . C 3 -36.838 -33.234 -2.81 1 57.23 0 N2 U6K 701 AAA 1 HETATM 18 N N3 U6K . . . C 3 -34.596 -34.135 -2.692 1 50.48 0 N3 U6K 701 AAA 1 HETATM 19 N N4 U6K . . . C 3 -34.343 -36.275 -3.827 1 52.14 0 N4 U6K 701 AAA 1 HETATM 20 C C7 U6K . . . C 3 -32.927 -36.488 -3.598 1 52.68 0 C7 U6K 701 AAA 1 HETATM 21 O O1 U6K . . . C 3 -32.346 -36.671 -4.868 1 50.53 0 O1 U6K 701 AAA 1 HETATM 22 C C9 U6K . . . C 3 -31.239 -38.623 -5.785 1 53.62 0 C9 U6K 701 AAA 1 HETATM 23 O O2 U6K . . . C 3 -29.927 -38.759 -6.329 1 49.85 0 O2 U6K 701 AAA 1 HETATM 24 C C10 U6K . . . C 3 -29.642 -39.777 -7.194 1 49.55 0 C10 U6K 701 AAA 1 HETATM 25 N N5 U6K . . . C 3 -31.001 -42.193 -9.581 1 47.1 0 N5 U6K 701 AAA 1 HETATM 26 C C18 U6K . . . C 3 -30.545 -40.478 -7.958 1 51.89 0 C18 U6K 701 AAA 1 HETATM 27 C C19 U6K . . . C 3 -31.122 -37.978 -3.292 1 51.9 0 C19 U6K 701 AAA 1 HETATM 28 O O3 U6K . . . C 3 -30.156 -37.196 -2.601 1 51.5 0 O3 U6K 701 AAA 1 HETATM 29 O O4 U6K . . . C 3 -32.587 -37.296 -1.425 1 61.53 0 O4 U6K 701 AAA 1 HETATM 30 H H3 U6K . . . C 3 -35.266 -32.481 -1.937 1 54.73 0 H3 U6K 701 AAA 1 HETATM 31 H H6 U6K . . . C 3 -37.194 -36.914 -5.039 1 50.79 0 H6 U6K 701 AAA 1 HETATM 32 H H7 U6K . . . C 3 -34.935 -37.905 -4.959 1 52.8 0 H7 U6K 701 AAA 1 HETATM 33 H H9 U6K . . . C 3 -30.373 -36.971 -4.941 1 52.15 0 H9 U6K 701 AAA 1 HETATM 34 H H12 U6K . . . C 3 -27.654 -39.555 -6.757 1 50.39 0 H12 U6K 701 AAA 1 HETATM 35 H H13 U6K . . . C 3 -26.887 -41.195 -8.164 1 51.07 0 H13 U6K 701 AAA 1 HETATM 36 H H14 U6K . . . C 3 -27.356 -42.982 -9.86 1 50.55 0 H14 U6K 701 AAA 1 HETATM 37 H H15 U6K . . . C 3 -28.917 -44.143 -11.117 1 50.8 0 H15 U6K 701 AAA 1 HETATM 38 H H16 U6K . . . C 3 -31.169 -43.604 -10.903 1 49.84 0 H16 U6K 701 AAA 1 HETATM 39 H H20 U6K . . . C 3 -33.144 -38.477 -2.953 1 55.12 0 H20 U6K 701 AAA 1 HETATM 40 H H23 U6K . . . C 3 -39.136 -33.685 -3.572 1 54.09 0 H23 U6K 701 AAA 1 HETATM 41 H H2 U6K . . . C 3 -38.869 -34.859 -4.503 1 54.05 0 H2 U6K 701 AAA 1 HETATM 42 H H8 U6K . . . C 3 -32.543 -35.685 -3.168 1 52.65 0 H8 U6K 701 AAA 1 HETATM 43 H H11 U6K . . . C 3 -31.527 -39.46 -5.362 1 52.41 0 H11 U6K 701 AAA 1 HETATM 44 H H10 U6K . . . C 3 -31.88 -38.385 -6.489 1 52.41 0 H10 U6K 701 AAA 1 HETATM 45 H H17 U6K . . . C 3 -31.46 -40.29 -7.902 1 50.71 0 H17 U6K 701 AAA 1 HETATM 46 H H18 U6K . . . C 3 -30.902 -38.943 -3.227 1 52.5 0 H18 U6K 701 AAA 1 HETATM 47 H H19 U6K . . . C 3 -30.59 -36.964 -2.033 0 30 0 H19 U6K 701 AAA 1 HETATM 48 H H21 U6K . . . C 3 -32.041 -37.765 -0.97 1 59.41 0 H21 U6K 701 AAA 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #