data_7BO8 # _model_server_result.job_id '_WLOLkYL1MEe_UZisWBSQA' _model_server_result.datetime_utc '2024-11-09 02:29:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bo8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":101}' # _entry.id 7BO8 # _exptl.entry_id 7BO8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BO8 _cell.length_a 31.15 _cell.length_b 53.25 _cell.length_c 111.88 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BO8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N GLY 2 A GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale2 A C ALA 19 A ALA 18 1_555 A N 4BF 20 A 4BF 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.289 ? covale ? covale3 A C 4BF 20 A 4BF 19 1_555 A N ALA 21 A ALA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? covale ? covale4 B C ACE 1 B ACE 0 1_555 B N GLY 2 B GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale5 B C ALA 19 B ALA 18 1_555 B N 4BF 20 B 4BF 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.292 ? covale ? covale6 B C 4BF 20 B 4BF 19 1_555 B N ALA 21 B ALA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? covale ? covale7 B C GLY 31 B GLY 30 1_555 B N NH2 32 B NH2 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.219 ? covale ? covale8 C C ACE 1 C ACE 0 1_555 C N GLY 2 C GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale9 C C ALA 19 C ALA 18 1_555 C N 4BF 20 C 4BF 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? covale ? covale10 C C 4BF 20 C 4BF 19 1_555 C N ALA 21 C ALA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale11 D C ACE 1 D ACE 0 1_555 D N GLY 2 D GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale12 D C ALA 19 D ALA 18 1_555 D N 4BF 20 D 4BF 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale13 D C 4BF 20 D 4BF 19 1_555 D N ALA 21 D ALA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale14 D C GLY 31 D GLY 30 1_555 D N NH2 32 D NH2 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.229 ? covale ? covale15 E C ALA 19 E ALA 18 1_555 E N 4BF 20 E 4BF 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.25 ? covale ? covale16 E C 4BF 20 E 4BF 19 1_555 E N ALA 21 E ALA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale17 F C ACE 1 F ACE 0 1_555 F N GLY 2 F GLY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale18 F C ALA 19 F ALA 18 1_555 F N 4BF 20 F 4BF 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale19 F C 4BF 20 F 4BF 19 1_555 F N ALA 21 F ALA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # _atom_sites.entry_id 7BO8 _atom_sites.fract_transf_matrix[1][1] 0.032103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 OXM B 1 101 2 OXM OXM . H 3 EDO F 1 101 1 EDO EDO . I 4 HOH A 1 101 2 HOH HOH . I 4 HOH A 2 102 30 HOH HOH . I 4 HOH A 3 103 1 HOH HOH . I 4 HOH A 4 104 19 HOH HOH . I 4 HOH A 5 105 5 HOH HOH . J 4 HOH B 1 201 3 HOH HOH . J 4 HOH B 2 202 10 HOH HOH . J 4 HOH B 3 203 9 HOH HOH . J 4 HOH B 4 204 21 HOH HOH . J 4 HOH B 5 205 27 HOH HOH . J 4 HOH B 6 206 28 HOH HOH . J 4 HOH B 7 207 12 HOH HOH . J 4 HOH B 8 208 15 HOH HOH . K 4 HOH C 1 101 13 HOH HOH . K 4 HOH C 2 102 18 HOH HOH . K 4 HOH C 3 103 17 HOH HOH . L 4 HOH D 1 101 24 HOH HOH . L 4 HOH D 2 102 29 HOH HOH . L 4 HOH D 3 103 14 HOH HOH . L 4 HOH D 4 104 16 HOH HOH . L 4 HOH D 5 105 25 HOH HOH . L 4 HOH D 6 106 11 HOH HOH . M 4 HOH E 1 101 8 HOH HOH . M 4 HOH E 2 102 7 HOH HOH . M 4 HOH E 3 103 4 HOH HOH . M 4 HOH E 4 104 23 HOH HOH . M 4 HOH E 5 105 31 HOH HOH . M 4 HOH E 6 106 22 HOH HOH . N 4 HOH F 1 201 6 HOH HOH . N 4 HOH F 2 202 26 HOH HOH . N 4 HOH F 3 203 20 HOH HOH . N 4 HOH F 4 204 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 3 27.49 10.275 68.711 1 47.24 ? C1 EDO 101 F 1 HETATM 2 O O1 EDO . . . H 3 27.189 10.637 70.04 1 39.05 ? O1 EDO 101 F 1 HETATM 3 C C2 EDO . . . H 3 26.394 9.513 68.039 1 40.45 ? C2 EDO 101 F 1 HETATM 4 O O2 EDO . . . H 3 26.271 8.238 68.615 1 40.64 ? O2 EDO 101 F 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #