data_7BOS # _model_server_result.job_id AlVK7vYtowqIt7L5dEJCSA _model_server_result.datetime_utc '2024-11-22 12:51:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bos # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":6}' # _entry.id 7BOS # _exptl.entry_id 7BOS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-dodecylmethanethioamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BOS _cell.length_a 35.863 _cell.length_b 65.312 _cell.length_c 113.999 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BOS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C19 P6S 1 B P6S 1 1_555 B N LYS 2 B LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B NZ LYS 2 B LYS 2 1_555 D C18 F4R . B F4R 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C ARG 4 B ARG 4 1_555 B N NH2 5 B NH2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A SG CYS 144 A CYS 195 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc2 A SG CYS 149 A CYS 200 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc3 A SG CYS 170 A CYS 221 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc4 A SG CYS 173 A CYS 224 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? # _chem_comp.formula 'C13 H27 N S' _chem_comp.formula_weight 229.425 _chem_comp.id F4R _chem_comp.mon_nstd_flag . _chem_comp.name N-dodecylmethanethioamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C27 F4R sing 83 n n C26 C25 F4R sing 84 n n C37 C27 F4R sing 85 n n C37 C38 F4R sing 86 n n C25 C24 F4R sing 87 n n C24 C23 F4R sing 88 n n C38 C39 F4R sing 89 n n C22 C23 F4R sing 90 n n C22 C21 F4R sing 91 n n C21 C20 F4R sing 92 n n C20 C19 F4R sing 93 n n C19 N4 F4R sing 94 n n N4 C18 F4R sing 95 n n C18 S1 F4R doub 96 n n C18 H1 F4R sing 97 n n C19 H3 F4R sing 98 n n C19 H4 F4R sing 99 n n C20 H5 F4R sing 100 n n C20 H6 F4R sing 101 n n C21 H7 F4R sing 102 n n C21 H8 F4R sing 103 n n C22 H9 F4R sing 104 n n C22 H10 F4R sing 105 n n C23 H11 F4R sing 106 n n C23 H12 F4R sing 107 n n C24 H13 F4R sing 108 n n C24 H14 F4R sing 109 n n C25 H15 F4R sing 110 n n C25 H16 F4R sing 111 n n C26 H17 F4R sing 112 n n C26 H18 F4R sing 113 n n C27 H19 F4R sing 114 n n C27 H20 F4R sing 115 n n C37 H21 F4R sing 116 n n C37 H22 F4R sing 117 n n C38 H23 F4R sing 118 n n C38 H24 F4R sing 119 n n C39 H25 F4R sing 120 n n C39 H26 F4R sing 121 n n C39 H27 F4R sing 122 n n N4 H2 F4R sing 123 n n # _atom_sites.entry_id 7BOS _atom_sites.fract_transf_matrix[1][1] 0.027884 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 501 501 ZN ZN . D 4 F4R B 1 6 601 F4R UNL . E 5 HOH A 1 601 101 HOH HOH . E 5 HOH A 2 602 102 HOH HOH . E 5 HOH A 3 603 94 HOH HOH . E 5 HOH A 4 604 96 HOH HOH . E 5 HOH A 5 605 18 HOH HOH . E 5 HOH A 6 606 106 HOH HOH . E 5 HOH A 7 607 81 HOH HOH . E 5 HOH A 8 608 89 HOH HOH . E 5 HOH A 9 609 64 HOH HOH . E 5 HOH A 10 610 63 HOH HOH . E 5 HOH A 11 611 22 HOH HOH . E 5 HOH A 12 612 66 HOH HOH . E 5 HOH A 13 613 108 HOH HOH . E 5 HOH A 14 614 79 HOH HOH . E 5 HOH A 15 615 7 HOH HOH . E 5 HOH A 16 616 1 HOH HOH . E 5 HOH A 17 617 9 HOH HOH . E 5 HOH A 18 618 35 HOH HOH . E 5 HOH A 19 619 12 HOH HOH . E 5 HOH A 20 620 39 HOH HOH . E 5 HOH A 21 621 76 HOH HOH . E 5 HOH A 22 622 42 HOH HOH . E 5 HOH A 23 623 99 HOH HOH . E 5 HOH A 24 624 85 HOH HOH . E 5 HOH A 25 625 97 HOH HOH . E 5 HOH A 26 626 107 HOH HOH . E 5 HOH A 27 627 54 HOH HOH . E 5 HOH A 28 628 31 HOH HOH . E 5 HOH A 29 629 60 HOH HOH . E 5 HOH A 30 630 6 HOH HOH . E 5 HOH A 31 631 77 HOH HOH . E 5 HOH A 32 632 5 HOH HOH . E 5 HOH A 33 633 105 HOH HOH . E 5 HOH A 34 634 83 HOH HOH . E 5 HOH A 35 635 26 HOH HOH . E 5 HOH A 36 636 37 HOH HOH . E 5 HOH A 37 637 95 HOH HOH . E 5 HOH A 38 638 51 HOH HOH . E 5 HOH A 39 639 32 HOH HOH . E 5 HOH A 40 640 40 HOH HOH . E 5 HOH A 41 641 82 HOH HOH . E 5 HOH A 42 642 41 HOH HOH . E 5 HOH A 43 643 91 HOH HOH . E 5 HOH A 44 644 109 HOH HOH . E 5 HOH A 45 645 10 HOH HOH . E 5 HOH A 46 646 34 HOH HOH . E 5 HOH A 47 647 19 HOH HOH . E 5 HOH A 48 648 53 HOH HOH . E 5 HOH A 49 649 8 HOH HOH . E 5 HOH A 50 650 38 HOH HOH . E 5 HOH A 51 651 3 HOH HOH . E 5 HOH A 52 652 50 HOH HOH . E 5 HOH A 53 653 4 HOH HOH . E 5 HOH A 54 654 57 HOH HOH . E 5 HOH A 55 655 16 HOH HOH . E 5 HOH A 56 656 84 HOH HOH . E 5 HOH A 57 657 17 HOH HOH . E 5 HOH A 58 658 23 HOH HOH . E 5 HOH A 59 659 62 HOH HOH . E 5 HOH A 60 660 72 HOH HOH . E 5 HOH A 61 661 28 HOH HOH . E 5 HOH A 62 662 47 HOH HOH . E 5 HOH A 63 663 68 HOH HOH . E 5 HOH A 64 664 55 HOH HOH . E 5 HOH A 65 665 86 HOH HOH . E 5 HOH A 66 666 2 HOH HOH . E 5 HOH A 67 667 25 HOH HOH . E 5 HOH A 68 668 49 HOH HOH . E 5 HOH A 69 669 65 HOH HOH . E 5 HOH A 70 670 33 HOH HOH . E 5 HOH A 71 671 45 HOH HOH . E 5 HOH A 72 672 20 HOH HOH . E 5 HOH A 73 673 21 HOH HOH . E 5 HOH A 74 674 46 HOH HOH . E 5 HOH A 75 675 104 HOH HOH . E 5 HOH A 76 676 110 HOH HOH . E 5 HOH A 77 677 13 HOH HOH . E 5 HOH A 78 678 56 HOH HOH . E 5 HOH A 79 679 15 HOH HOH . E 5 HOH A 80 680 87 HOH HOH . E 5 HOH A 81 681 78 HOH HOH . E 5 HOH A 82 682 70 HOH HOH . E 5 HOH A 83 683 67 HOH HOH . E 5 HOH A 84 684 61 HOH HOH . E 5 HOH A 85 685 93 HOH HOH . E 5 HOH A 86 686 48 HOH HOH . E 5 HOH A 87 687 43 HOH HOH . E 5 HOH A 88 688 30 HOH HOH . E 5 HOH A 89 689 80 HOH HOH . E 5 HOH A 90 690 27 HOH HOH . E 5 HOH A 91 691 71 HOH HOH . E 5 HOH A 92 692 73 HOH HOH . E 5 HOH A 93 693 14 HOH HOH . E 5 HOH A 94 694 92 HOH HOH . E 5 HOH A 95 695 88 HOH HOH . E 5 HOH A 96 696 111 HOH HOH . E 5 HOH A 97 697 36 HOH HOH . E 5 HOH A 98 698 29 HOH HOH . E 5 HOH A 99 699 52 HOH HOH . E 5 HOH A 100 700 44 HOH HOH . E 5 HOH A 101 701 24 HOH HOH . E 5 HOH A 102 702 58 HOH HOH . E 5 HOH A 103 703 11 HOH HOH . E 5 HOH A 104 704 69 HOH HOH . E 5 HOH A 105 705 74 HOH HOH . E 5 HOH A 106 706 90 HOH HOH . E 5 HOH A 107 707 103 HOH HOH . E 5 HOH A 108 708 112 HOH HOH . E 5 HOH A 109 709 75 HOH HOH . E 5 HOH A 110 710 100 HOH HOH . E 5 HOH A 111 711 59 HOH HOH . E 5 HOH A 112 712 98 HOH HOH . F 5 HOH B 1 201 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 F4R . . . D 4 -2.896 9.822 22.658 1 34.16 ? C18 F4R 6 B 1 HETATM 2 S S1 F4R . . . D 4 -3.739 10.498 23.804 1 34.01 ? S1 F4R 6 B 1 HETATM 3 N N4 F4R . . . D 4 -1.755 10.37 22.243 1 32.67 ? N4 F4R 6 B 1 HETATM 4 C C19 F4R . . . D 4 -1.059 10.01 21.015 1 35.48 ? C19 F4R 6 B 1 HETATM 5 C C20 F4R . . . D 4 -1.874 10.376 19.771 1 38.82 ? C20 F4R 6 B 1 HETATM 6 C C21 F4R . . . D 4 -1.017 10.358 18.512 1 44.67 ? C21 F4R 6 B 1 HETATM 7 C C22 F4R . . . D 4 -1.389 11.497 17.563 1 46.71 ? C22 F4R 6 B 1 HETATM 8 C C23 F4R . . . D 4 -0.617 12.763 17.932 1 47.99 ? C23 F4R 6 B 1 HETATM 9 C C24 F4R . . . D 4 -0.988 13.949 17.056 1 46.28 ? C24 F4R 6 B 1 HETATM 10 C C25 F4R . . . D 4 0.193 14.895 16.89 1 47.27 ? C25 F4R 6 B 1 HETATM 11 C C26 F4R . . . D 4 -0.12 15.942 15.828 1 46.66 ? C26 F4R 6 B 1 HETATM 12 C C27 F4R . . . D 4 0.487 17.294 16.178 1 45.39 ? C27 F4R 6 B 1 HETATM 13 C C37 F4R . . . D 4 1.996 17.246 15.997 1 43.76 ? C37 F4R 6 B 1 HETATM 14 C C38 F4R . . . D 4 2.717 18.309 16.813 1 45.97 ? C38 F4R 6 B 1 HETATM 15 C C39 F4R . . . D 4 4.21 18.044 16.76 1 46.2 ? C39 F4R 6 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #