data_7BPA # _model_server_result.job_id x7GG7JecMJYqdWpk9e2SFQ _model_server_result.datetime_utc '2024-10-20 20:54:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bpa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":902}' # _entry.id 7BPA # _exptl.entry_id 7BPA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BPA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BPA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 J N N ? 2 L N N ? 2 N N N ? 2 P N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NH2 ARG 635 A ARG 635 1_555 H O2G ANP . A ANP 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale2 B NH2 ARG 635 B ARG 635 1_555 I O2G ANP . B ANP 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale3 C NH2 ARG 635 C ARG 635 1_555 K O2G ANP . C ANP 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? covale ? covale4 D NH2 ARG 635 D ARG 635 1_555 M O2G ANP . D ANP 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale5 E NH2 ARG 635 E ARG 635 1_555 O O2G ANP . E ANP 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale6 F NH2 ARG 635 F ARG 635 1_555 Q O2G ANP . F ANP 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7BPA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ADP A 1 901 801 ADP ADP . H 3 ANP A 1 902 901 ANP ANP . I 3 ANP B 1 901 901 ANP ANP . J 2 ADP B 1 902 801 ADP ADP . K 3 ANP C 1 901 901 ANP ANP . L 2 ADP C 1 902 801 ADP ADP . M 3 ANP D 1 901 901 ANP ANP . N 2 ADP D 1 902 801 ADP ADP . O 3 ANP E 1 901 901 ANP ANP . P 2 ADP E 1 902 801 ADP ADP . Q 3 ANP F 1 901 901 ANP ANP . R 2 ADP F 1 902 801 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . J 2 225.453 177.595 186.741 1 44.92 ? PB ADP 902 B 1 HETATM 2 O O1B ADP . . . J 2 224.118 177.58 186.045 1 44.92 ? O1B ADP 902 B 1 HETATM 3 O O2B ADP . . . J 2 226.481 176.717 186.079 1 44.92 ? O2B ADP 902 B 1 HETATM 4 O O3B ADP . . . J 2 225.946 178.995 186.983 1 44.92 ? O3B ADP 902 B 1 HETATM 5 P PA ADP . . . J 2 225.229 177.363 189.657 1 44.92 ? PA ADP 902 B 1 HETATM 6 O O1A ADP . . . J 2 225.628 178.803 189.809 1 44.92 ? O1A ADP 902 B 1 HETATM 7 O O2A ADP . . . J 2 223.938 177 190.339 1 44.92 ? O2A ADP 902 B 1 HETATM 8 O O3A ADP . . . J 2 225.193 176.816 188.139 1 44.92 ? O3A ADP 902 B 1 HETATM 9 O O5' ADP . . . J 2 226.329 176.473 190.39 1 44.92 ? O5' ADP 902 B 1 HETATM 10 C C5' ADP . . . J 2 227.164 177.118 191.336 1 44.92 ? C5' ADP 902 B 1 HETATM 11 C C4' ADP . . . J 2 228.519 177.578 190.808 1 44.92 ? C4' ADP 902 B 1 HETATM 12 O O4' ADP . . . J 2 229.51 177.433 191.839 1 44.92 ? O4' ADP 902 B 1 HETATM 13 C C3' ADP . . . J 2 229.126 176.737 189.705 1 44.92 ? C3' ADP 902 B 1 HETATM 14 O O3' ADP . . . J 2 229.839 177.566 188.792 1 44.92 ? O3' ADP 902 B 1 HETATM 15 C C2' ADP . . . J 2 230.09 175.758 190.345 1 44.92 ? C2' ADP 902 B 1 HETATM 16 O O2' ADP . . . J 2 231.343 175.888 189.694 1 44.92 ? O2' ADP 902 B 1 HETATM 17 C C1' ADP . . . J 2 230.222 176.188 191.789 1 44.92 ? C1' ADP 902 B 1 HETATM 18 N N9 ADP . . . J 2 229.753 175.21 192.82 1 44.92 ? N9 ADP 902 B 1 HETATM 19 C C8 ADP . . . J 2 228.746 175.28 193.698 1 44.92 ? C8 ADP 902 B 1 HETATM 20 N N7 ADP . . . J 2 228.621 174.182 194.464 1 44.92 ? N7 ADP 902 B 1 HETATM 21 C C5 ADP . . . J 2 229.591 173.36 194.084 1 44.92 ? C5 ADP 902 B 1 HETATM 22 C C6 ADP . . . J 2 230.032 172.026 194.488 1 44.92 ? C6 ADP 902 B 1 HETATM 23 N N6 ADP . . . J 2 229.388 171.372 195.474 1 44.92 ? N6 ADP 902 B 1 HETATM 24 N N1 ADP . . . J 2 231.089 171.497 193.857 1 44.92 ? N1 ADP 902 B 1 HETATM 25 C C2 ADP . . . J 2 231.725 172.15 192.882 1 44.92 ? C2 ADP 902 B 1 HETATM 26 N N3 ADP . . . J 2 231.366 173.368 192.466 1 44.92 ? N3 ADP 902 B 1 HETATM 27 C C4 ADP . . . J 2 230.307 174.014 192.995 1 44.92 ? C4 ADP 902 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #