data_7BPH # _model_server_result.job_id LBWQtezo-zsxhSkd6_MjAw _model_server_result.datetime_utc '2024-11-13 05:19:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 7BPH # _exptl.entry_id 7BPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BPH _cell.length_a 68.905 _cell.length_b 78.332 _cell.length_c 80.043 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 B ACE 0 1_555 B N DTY 2 B DTY 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale2 B CH3 ACE 1 B ACE 0 1_555 B SG CYS 14 B CYS 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? covale ? covale3 B C DTY 2 B DTY 1 1_555 B N PHE 3 B PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C GLY 15 B GLY 14 1_555 B N NH2 16 B NH2 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OG SER 51 A SER 54 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc2 A OG1 THR 187 A THR 204 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc3 C O1G GNP . A GNP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc4 C O1B GNP . A GNP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc5 D MG MG . A MG 402 1_555 G O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc6 D MG MG . A MG 402 1_555 G O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 210 n n C1 C2 GOL sing 211 n n C1 H11 GOL sing 212 n n C1 H12 GOL sing 213 n n O1 HO1 GOL sing 214 n n C2 O2 GOL sing 215 n n C2 C3 GOL sing 216 n n C2 H2 GOL sing 217 n n O2 HO2 GOL sing 218 n n C3 O3 GOL sing 219 n n C3 H31 GOL sing 220 n n C3 H32 GOL sing 221 n n O3 HO3 GOL sing 222 n n # _atom_sites.entry_id 7BPH _atom_sites.fract_transf_matrix[1][1] 0.014513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012766 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GNP A 1 401 1 GNP GNP . D 4 MG A 1 402 2 MG MG . E 5 GOL A 1 403 3 GOL GOL . F 6 CL A 1 404 4 CL CL . G 7 HOH A 1 501 127 HOH HOH . G 7 HOH A 2 502 77 HOH HOH . G 7 HOH A 3 503 124 HOH HOH . G 7 HOH A 4 504 101 HOH HOH . G 7 HOH A 5 505 70 HOH HOH . G 7 HOH A 6 506 94 HOH HOH . G 7 HOH A 7 507 26 HOH HOH . G 7 HOH A 8 508 76 HOH HOH . G 7 HOH A 9 509 61 HOH HOH . G 7 HOH A 10 510 1 HOH HOH . G 7 HOH A 11 511 17 HOH HOH . G 7 HOH A 12 512 74 HOH HOH . G 7 HOH A 13 513 35 HOH HOH . G 7 HOH A 14 514 36 HOH HOH . G 7 HOH A 15 515 119 HOH HOH . G 7 HOH A 16 516 88 HOH HOH . G 7 HOH A 17 517 128 HOH HOH . G 7 HOH A 18 518 112 HOH HOH . G 7 HOH A 19 519 2 HOH HOH . G 7 HOH A 20 520 79 HOH HOH . G 7 HOH A 21 521 106 HOH HOH . G 7 HOH A 22 522 115 HOH HOH . G 7 HOH A 23 523 108 HOH HOH . G 7 HOH A 24 524 104 HOH HOH . G 7 HOH A 25 525 86 HOH HOH . G 7 HOH A 26 526 75 HOH HOH . G 7 HOH A 27 527 64 HOH HOH . G 7 HOH A 28 528 116 HOH HOH . G 7 HOH A 29 529 52 HOH HOH . G 7 HOH A 30 530 85 HOH HOH . G 7 HOH A 31 531 99 HOH HOH . G 7 HOH A 32 532 62 HOH HOH . G 7 HOH A 33 533 29 HOH HOH . G 7 HOH A 34 534 8 HOH HOH . G 7 HOH A 35 535 67 HOH HOH . G 7 HOH A 36 536 58 HOH HOH . G 7 HOH A 37 537 45 HOH HOH . G 7 HOH A 38 538 95 HOH HOH . G 7 HOH A 39 539 5 HOH HOH . G 7 HOH A 40 540 117 HOH HOH . G 7 HOH A 41 541 9 HOH HOH . G 7 HOH A 42 542 53 HOH HOH . G 7 HOH A 43 543 7 HOH HOH . G 7 HOH A 44 544 109 HOH HOH . G 7 HOH A 45 545 22 HOH HOH . G 7 HOH A 46 546 39 HOH HOH . G 7 HOH A 47 547 55 HOH HOH . G 7 HOH A 48 548 114 HOH HOH . G 7 HOH A 49 549 31 HOH HOH . G 7 HOH A 50 550 32 HOH HOH . G 7 HOH A 51 551 15 HOH HOH . G 7 HOH A 52 552 25 HOH HOH . G 7 HOH A 53 553 121 HOH HOH . G 7 HOH A 54 554 107 HOH HOH . G 7 HOH A 55 555 97 HOH HOH . G 7 HOH A 56 556 98 HOH HOH . G 7 HOH A 57 557 57 HOH HOH . G 7 HOH A 58 558 71 HOH HOH . G 7 HOH A 59 559 24 HOH HOH . G 7 HOH A 60 560 132 HOH HOH . G 7 HOH A 61 561 42 HOH HOH . G 7 HOH A 62 562 11 HOH HOH . G 7 HOH A 63 563 12 HOH HOH . G 7 HOH A 64 564 50 HOH HOH . G 7 HOH A 65 565 68 HOH HOH . G 7 HOH A 66 566 51 HOH HOH . G 7 HOH A 67 567 60 HOH HOH . G 7 HOH A 68 568 37 HOH HOH . G 7 HOH A 69 569 78 HOH HOH . G 7 HOH A 70 570 10 HOH HOH . G 7 HOH A 71 571 34 HOH HOH . G 7 HOH A 72 572 6 HOH HOH . G 7 HOH A 73 573 92 HOH HOH . G 7 HOH A 74 574 3 HOH HOH . G 7 HOH A 75 575 43 HOH HOH . G 7 HOH A 76 576 48 HOH HOH . G 7 HOH A 77 577 23 HOH HOH . G 7 HOH A 78 578 16 HOH HOH . G 7 HOH A 79 579 72 HOH HOH . G 7 HOH A 80 580 19 HOH HOH . G 7 HOH A 81 581 133 HOH HOH . G 7 HOH A 82 582 63 HOH HOH . G 7 HOH A 83 583 80 HOH HOH . G 7 HOH A 84 584 93 HOH HOH . G 7 HOH A 85 585 18 HOH HOH . G 7 HOH A 86 586 49 HOH HOH . G 7 HOH A 87 587 91 HOH HOH . G 7 HOH A 88 588 38 HOH HOH . G 7 HOH A 89 589 4 HOH HOH . G 7 HOH A 90 590 59 HOH HOH . G 7 HOH A 91 591 66 HOH HOH . G 7 HOH A 92 592 82 HOH HOH . G 7 HOH A 93 593 30 HOH HOH . G 7 HOH A 94 594 120 HOH HOH . G 7 HOH A 95 595 100 HOH HOH . G 7 HOH A 96 596 20 HOH HOH . G 7 HOH A 97 597 113 HOH HOH . G 7 HOH A 98 598 131 HOH HOH . G 7 HOH A 99 599 81 HOH HOH . G 7 HOH A 100 600 47 HOH HOH . G 7 HOH A 101 601 40 HOH HOH . G 7 HOH A 102 602 65 HOH HOH . G 7 HOH A 103 603 46 HOH HOH . G 7 HOH A 104 604 69 HOH HOH . G 7 HOH A 105 605 90 HOH HOH . G 7 HOH A 106 606 14 HOH HOH . G 7 HOH A 107 607 96 HOH HOH . G 7 HOH A 108 608 56 HOH HOH . G 7 HOH A 109 609 110 HOH HOH . G 7 HOH A 110 610 44 HOH HOH . G 7 HOH A 111 611 130 HOH HOH . G 7 HOH A 112 612 125 HOH HOH . G 7 HOH A 113 613 33 HOH HOH . G 7 HOH A 114 614 123 HOH HOH . G 7 HOH A 115 615 73 HOH HOH . G 7 HOH A 116 616 54 HOH HOH . G 7 HOH A 117 617 28 HOH HOH . G 7 HOH A 118 618 111 HOH HOH . G 7 HOH A 119 619 118 HOH HOH . G 7 HOH A 120 620 84 HOH HOH . G 7 HOH A 121 621 105 HOH HOH . G 7 HOH A 122 622 41 HOH HOH . G 7 HOH A 123 623 102 HOH HOH . G 7 HOH A 124 624 83 HOH HOH . G 7 HOH A 125 625 122 HOH HOH . G 7 HOH A 126 626 89 HOH HOH . G 7 HOH A 127 627 126 HOH HOH . H 7 HOH B 1 101 13 HOH HOH . H 7 HOH B 2 102 27 HOH HOH . H 7 HOH B 3 103 21 HOH HOH . H 7 HOH B 4 104 87 HOH HOH . H 7 HOH B 5 105 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 -14.818 -22.822 9.927 1 28.22 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . E 5 -15.606 -21.885 9.197 1 48.15 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . E 5 -14.247 -23.79 8.862 1 39.35 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . E 5 -14.455 -23.378 7.53 1 46.27 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . E 5 -12.768 -23.83 9.195 1 23 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . E 5 -12.206 -24.668 8.176 1 42.82 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #