data_7BPR # _model_server_result.job_id SeNAncB4IMj5UKf8ifCEcw _model_server_result.datetime_utc '2025-07-02 00:21:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 7BPR # _exptl.entry_id 7BPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PLATINUM (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 81.7 _cell.angle_beta 87.84 _cell.angle_gamma 61.41 _cell.entry_id 7BPR _cell.length_a 48.053 _cell.length_b 49.48 _cell.length_c 57.202 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 28 1_555 A SG CYS 39 A CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? disulf ? disulf2 A SG CYS 33 A CYS 54 1_555 A SG CYS 60 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 88 A CYS 109 1_555 A SG CYS 93 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf4 A SG CYS 119 A CYS 140 1_555 A SG CYS 143 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 A SG CYS 122 A CYS 143 1_555 A SG CYS 128 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf6 A SG CYS 136 A CYS 157 1_555 A SG CYS 164 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf7 A SG CYS 170 A CYS 191 1_555 A SG CYS 188 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf8 B SG CYS 7 B CYS 28 1_555 B SG CYS 39 B CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 B SG CYS 33 B CYS 54 1_555 B SG CYS 60 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 B SG CYS 88 B CYS 109 1_555 B SG CYS 93 B CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf11 B SG CYS 119 B CYS 140 1_555 B SG CYS 143 B CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? disulf ? disulf12 B SG CYS 122 B CYS 143 1_555 B SG CYS 128 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf13 B SG CYS 136 B CYS 157 1_555 B SG CYS 164 B CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf14 B SG CYS 170 B CYS 191 1_555 B SG CYS 188 B CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 A ND2 ASN 138 A ASN 159 1_555 C C1 NAG . A NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? # _chem_comp.formula 'Pt 2' _chem_comp.formula_weight 195.078 _chem_comp.id PT _chem_comp.mon_nstd_flag . _chem_comp.name 'PLATINUM (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7BPR _atom_sites.fract_transf_matrix[1][1] 0.02081 _atom_sites.fract_transf_matrix[1][2] -0.011344 _atom_sites.fract_transf_matrix[1][3] 0.000858 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023018 _atom_sites.fract_transf_matrix[2][3] -0.003349 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 301 300 NAG NAG . D 3 PT A 1 302 2 PT PT . E 3 PT A 1 303 3 PT PT . F 3 PT A 1 304 4 PT PT . G 3 PT B 1 301 1 PT PT . H 3 PT B 1 302 5 PT PT . I 3 PT B 1 303 6 PT PT . J 4 HOH A 1 401 92 HOH HOH . J 4 HOH A 2 402 69 HOH HOH . J 4 HOH A 3 403 36 HOH HOH . J 4 HOH A 4 404 43 HOH HOH . J 4 HOH A 5 405 139 HOH HOH . J 4 HOH A 6 406 12 HOH HOH . J 4 HOH A 7 407 37 HOH HOH . J 4 HOH A 8 408 120 HOH HOH . J 4 HOH A 9 409 154 HOH HOH . J 4 HOH A 10 410 157 HOH HOH . J 4 HOH A 11 411 28 HOH HOH . J 4 HOH A 12 412 82 HOH HOH . J 4 HOH A 13 413 94 HOH HOH . J 4 HOH A 14 414 16 HOH HOH . J 4 HOH A 15 415 35 HOH HOH . J 4 HOH A 16 416 2 HOH HOH . J 4 HOH A 17 417 1 HOH HOH . J 4 HOH A 18 418 33 HOH HOH . J 4 HOH A 19 419 6 HOH HOH . J 4 HOH A 20 420 25 HOH HOH . J 4 HOH A 21 421 73 HOH HOH . J 4 HOH A 22 422 31 HOH HOH . J 4 HOH A 23 423 23 HOH HOH . J 4 HOH A 24 424 89 HOH HOH . J 4 HOH A 25 425 52 HOH HOH . J 4 HOH A 26 426 118 HOH HOH . J 4 HOH A 27 427 181 HOH HOH . J 4 HOH A 28 428 30 HOH HOH . J 4 HOH A 29 429 145 HOH HOH . J 4 HOH A 30 430 186 HOH HOH . J 4 HOH A 31 431 159 HOH HOH . J 4 HOH A 32 432 148 HOH HOH . J 4 HOH A 33 433 44 HOH HOH . J 4 HOH A 34 434 163 HOH HOH . J 4 HOH A 35 435 24 HOH HOH . J 4 HOH A 36 436 4 HOH HOH . J 4 HOH A 37 437 90 HOH HOH . J 4 HOH A 38 438 107 HOH HOH . J 4 HOH A 39 439 22 HOH HOH . J 4 HOH A 40 440 85 HOH HOH . J 4 HOH A 41 441 142 HOH HOH . J 4 HOH A 42 442 29 HOH HOH . J 4 HOH A 43 443 185 HOH HOH . J 4 HOH A 44 444 10 HOH HOH . J 4 HOH A 45 445 42 HOH HOH . J 4 HOH A 46 446 99 HOH HOH . J 4 HOH A 47 447 144 HOH HOH . J 4 HOH A 48 448 135 HOH HOH . J 4 HOH A 49 449 106 HOH HOH . J 4 HOH A 50 450 113 HOH HOH . J 4 HOH A 51 451 45 HOH HOH . J 4 HOH A 52 452 32 HOH HOH . J 4 HOH A 53 453 26 HOH HOH . J 4 HOH A 54 454 150 HOH HOH . J 4 HOH A 55 455 13 HOH HOH . J 4 HOH A 56 456 161 HOH HOH . J 4 HOH A 57 457 165 HOH HOH . J 4 HOH A 58 458 19 HOH HOH . J 4 HOH A 59 459 173 HOH HOH . J 4 HOH A 60 460 77 HOH HOH . J 4 HOH A 61 461 137 HOH HOH . J 4 HOH A 62 462 59 HOH HOH . J 4 HOH A 63 463 114 HOH HOH . J 4 HOH A 64 464 149 HOH HOH . J 4 HOH A 65 465 34 HOH HOH . J 4 HOH A 66 466 93 HOH HOH . J 4 HOH A 67 467 105 HOH HOH . J 4 HOH A 68 468 98 HOH HOH . J 4 HOH A 69 469 141 HOH HOH . J 4 HOH A 70 470 175 HOH HOH . J 4 HOH A 71 471 166 HOH HOH . J 4 HOH A 72 472 184 HOH HOH . J 4 HOH A 73 473 51 HOH HOH . J 4 HOH A 74 474 117 HOH HOH . J 4 HOH A 75 475 183 HOH HOH . J 4 HOH A 76 476 152 HOH HOH . J 4 HOH A 77 477 38 HOH HOH . J 4 HOH A 78 478 123 HOH HOH . J 4 HOH A 79 479 127 HOH HOH . J 4 HOH A 80 480 104 HOH HOH . J 4 HOH A 81 481 70 HOH HOH . J 4 HOH A 82 482 158 HOH HOH . J 4 HOH A 83 483 46 HOH HOH . J 4 HOH A 84 484 119 HOH HOH . J 4 HOH A 85 485 91 HOH HOH . J 4 HOH A 86 486 87 HOH HOH . J 4 HOH A 87 487 126 HOH HOH . J 4 HOH A 88 488 147 HOH HOH . J 4 HOH A 89 489 124 HOH HOH . J 4 HOH A 90 490 88 HOH HOH . J 4 HOH A 91 491 121 HOH HOH . J 4 HOH A 92 492 14 HOH HOH . J 4 HOH A 93 493 122 HOH HOH . J 4 HOH A 94 494 55 HOH HOH . J 4 HOH A 95 495 171 HOH HOH . J 4 HOH A 96 496 167 HOH HOH . J 4 HOH A 97 497 177 HOH HOH . J 4 HOH A 98 498 97 HOH HOH . J 4 HOH A 99 499 174 HOH HOH . J 4 HOH A 100 500 125 HOH HOH . K 4 HOH B 1 401 160 HOH HOH . K 4 HOH B 2 402 61 HOH HOH . K 4 HOH B 3 403 67 HOH HOH . K 4 HOH B 4 404 75 HOH HOH . K 4 HOH B 5 405 15 HOH HOH . K 4 HOH B 6 406 20 HOH HOH . K 4 HOH B 7 407 18 HOH HOH . K 4 HOH B 8 408 134 HOH HOH . K 4 HOH B 9 409 81 HOH HOH . K 4 HOH B 10 410 83 HOH HOH . K 4 HOH B 11 411 8 HOH HOH . K 4 HOH B 12 412 17 HOH HOH . K 4 HOH B 13 413 57 HOH HOH . K 4 HOH B 14 414 136 HOH HOH . K 4 HOH B 15 415 168 HOH HOH . K 4 HOH B 16 416 64 HOH HOH . K 4 HOH B 17 417 54 HOH HOH . K 4 HOH B 18 418 27 HOH HOH . K 4 HOH B 19 419 9 HOH HOH . K 4 HOH B 20 420 176 HOH HOH . K 4 HOH B 21 421 3 HOH HOH . K 4 HOH B 22 422 151 HOH HOH . K 4 HOH B 23 423 79 HOH HOH . K 4 HOH B 24 424 178 HOH HOH . K 4 HOH B 25 425 115 HOH HOH . K 4 HOH B 26 426 66 HOH HOH . K 4 HOH B 27 427 72 HOH HOH . K 4 HOH B 28 428 65 HOH HOH . K 4 HOH B 29 429 100 HOH HOH . K 4 HOH B 30 430 49 HOH HOH . K 4 HOH B 31 431 68 HOH HOH . K 4 HOH B 32 432 172 HOH HOH . K 4 HOH B 33 433 60 HOH HOH . K 4 HOH B 34 434 131 HOH HOH . K 4 HOH B 35 435 41 HOH HOH . K 4 HOH B 36 436 112 HOH HOH . K 4 HOH B 37 437 63 HOH HOH . K 4 HOH B 38 438 156 HOH HOH . K 4 HOH B 39 439 129 HOH HOH . K 4 HOH B 40 440 103 HOH HOH . K 4 HOH B 41 441 48 HOH HOH . K 4 HOH B 42 442 101 HOH HOH . K 4 HOH B 43 443 86 HOH HOH . K 4 HOH B 44 444 84 HOH HOH . K 4 HOH B 45 445 111 HOH HOH . K 4 HOH B 46 446 133 HOH HOH . K 4 HOH B 47 447 56 HOH HOH . K 4 HOH B 48 448 78 HOH HOH . K 4 HOH B 49 449 109 HOH HOH . K 4 HOH B 50 450 182 HOH HOH . K 4 HOH B 51 451 74 HOH HOH . K 4 HOH B 52 452 21 HOH HOH . K 4 HOH B 53 453 76 HOH HOH . K 4 HOH B 54 454 110 HOH HOH . K 4 HOH B 55 455 7 HOH HOH . K 4 HOH B 56 456 128 HOH HOH . K 4 HOH B 57 457 40 HOH HOH . K 4 HOH B 58 458 58 HOH HOH . K 4 HOH B 59 459 39 HOH HOH . K 4 HOH B 60 460 47 HOH HOH . K 4 HOH B 61 461 116 HOH HOH . K 4 HOH B 62 462 153 HOH HOH . K 4 HOH B 63 463 140 HOH HOH . K 4 HOH B 64 464 11 HOH HOH . K 4 HOH B 65 465 146 HOH HOH . K 4 HOH B 66 466 62 HOH HOH . K 4 HOH B 67 467 108 HOH HOH . K 4 HOH B 68 468 164 HOH HOH . K 4 HOH B 69 469 179 HOH HOH . K 4 HOH B 70 470 130 HOH HOH . K 4 HOH B 71 471 170 HOH HOH . K 4 HOH B 72 472 96 HOH HOH . K 4 HOH B 73 473 71 HOH HOH . K 4 HOH B 74 474 53 HOH HOH . K 4 HOH B 75 475 155 HOH HOH . K 4 HOH B 76 476 143 HOH HOH . K 4 HOH B 77 477 95 HOH HOH . K 4 HOH B 78 478 132 HOH HOH . K 4 HOH B 79 479 102 HOH HOH . K 4 HOH B 80 480 180 HOH HOH . K 4 HOH B 81 481 138 HOH HOH . K 4 HOH B 82 482 169 HOH HOH . K 4 HOH B 83 483 162 HOH HOH . K 4 HOH B 84 484 50 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PT _atom_site.label_atom_id PT _atom_site.label_comp_id PT _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.409 _atom_site.Cartn_y 16.308 _atom_site.Cartn_z 8.228 _atom_site.occupancy 0.75 _atom_site.B_iso_or_equiv 75.05 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id PT _atom_site.auth_comp_id PT _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #