data_7BQ2 # _model_server_result.job_id x3JtDKKnRJTfLHY2XtBBqw _model_server_result.datetime_utc '2024-11-24 03:46:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bq2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 7BQ2 # _exptl.entry_id 7BQ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.07 _cell.angle_gamma 90 _cell.entry_id 7BQ2 _cell.length_a 44.977 _cell.length_b 61.107 _cell.length_c 53.206 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BQ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7BQ2 _atom_sites.fract_transf_matrix[1][1] 0.022234 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006826 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 P7F A 1 501 1 P7F P7F . D 4 GOL A 1 502 1 GOL GOL . E 5 HOH A 1 601 58 HOH HOH . E 5 HOH A 2 602 114 HOH HOH . E 5 HOH A 3 603 59 HOH HOH . E 5 HOH A 4 604 23 HOH HOH . E 5 HOH A 5 605 60 HOH HOH . E 5 HOH A 6 606 34 HOH HOH . E 5 HOH A 7 607 82 HOH HOH . E 5 HOH A 8 608 50 HOH HOH . E 5 HOH A 9 609 36 HOH HOH . E 5 HOH A 10 610 111 HOH HOH . E 5 HOH A 11 611 53 HOH HOH . E 5 HOH A 12 612 52 HOH HOH . E 5 HOH A 13 613 37 HOH HOH . E 5 HOH A 14 614 93 HOH HOH . E 5 HOH A 15 615 109 HOH HOH . E 5 HOH A 16 616 5 HOH HOH . E 5 HOH A 17 617 1 HOH HOH . E 5 HOH A 18 618 102 HOH HOH . E 5 HOH A 19 619 121 HOH HOH . E 5 HOH A 20 620 104 HOH HOH . E 5 HOH A 21 621 48 HOH HOH . E 5 HOH A 22 622 6 HOH HOH . E 5 HOH A 23 623 65 HOH HOH . E 5 HOH A 24 624 31 HOH HOH . E 5 HOH A 25 625 13 HOH HOH . E 5 HOH A 26 626 25 HOH HOH . E 5 HOH A 27 627 11 HOH HOH . E 5 HOH A 28 628 20 HOH HOH . E 5 HOH A 29 629 56 HOH HOH . E 5 HOH A 30 630 24 HOH HOH . E 5 HOH A 31 631 113 HOH HOH . E 5 HOH A 32 632 96 HOH HOH . E 5 HOH A 33 633 38 HOH HOH . E 5 HOH A 34 634 69 HOH HOH . E 5 HOH A 35 635 86 HOH HOH . E 5 HOH A 36 636 119 HOH HOH . E 5 HOH A 37 637 112 HOH HOH . E 5 HOH A 38 638 78 HOH HOH . E 5 HOH A 39 639 71 HOH HOH . E 5 HOH A 40 640 85 HOH HOH . E 5 HOH A 41 641 88 HOH HOH . E 5 HOH A 42 642 33 HOH HOH . E 5 HOH A 43 643 92 HOH HOH . E 5 HOH A 44 644 98 HOH HOH . E 5 HOH A 45 645 22 HOH HOH . E 5 HOH A 46 646 67 HOH HOH . E 5 HOH A 47 647 43 HOH HOH . E 5 HOH A 48 648 10 HOH HOH . E 5 HOH A 49 649 90 HOH HOH . E 5 HOH A 50 650 100 HOH HOH . E 5 HOH A 51 651 73 HOH HOH . E 5 HOH A 52 652 15 HOH HOH . E 5 HOH A 53 653 40 HOH HOH . E 5 HOH A 54 654 7 HOH HOH . E 5 HOH A 55 655 41 HOH HOH . E 5 HOH A 56 656 8 HOH HOH . E 5 HOH A 57 657 27 HOH HOH . E 5 HOH A 58 658 122 HOH HOH . E 5 HOH A 59 659 46 HOH HOH . E 5 HOH A 60 660 63 HOH HOH . E 5 HOH A 61 661 70 HOH HOH . E 5 HOH A 62 662 57 HOH HOH . E 5 HOH A 63 663 3 HOH HOH . E 5 HOH A 64 664 42 HOH HOH . E 5 HOH A 65 665 21 HOH HOH . E 5 HOH A 66 666 51 HOH HOH . E 5 HOH A 67 667 47 HOH HOH . E 5 HOH A 68 668 14 HOH HOH . E 5 HOH A 69 669 95 HOH HOH . E 5 HOH A 70 670 4 HOH HOH . E 5 HOH A 71 671 16 HOH HOH . E 5 HOH A 72 672 94 HOH HOH . E 5 HOH A 73 673 103 HOH HOH . E 5 HOH A 74 674 76 HOH HOH . E 5 HOH A 75 675 105 HOH HOH . E 5 HOH A 76 676 84 HOH HOH . E 5 HOH A 77 677 107 HOH HOH . E 5 HOH A 78 678 79 HOH HOH . E 5 HOH A 79 679 108 HOH HOH . E 5 HOH A 80 680 87 HOH HOH . E 5 HOH A 81 681 45 HOH HOH . E 5 HOH A 82 682 116 HOH HOH . E 5 HOH A 83 683 115 HOH HOH . E 5 HOH A 84 684 18 HOH HOH . E 5 HOH A 85 685 26 HOH HOH . E 5 HOH A 86 686 117 HOH HOH . E 5 HOH A 87 687 29 HOH HOH . E 5 HOH A 88 688 106 HOH HOH . E 5 HOH A 89 689 35 HOH HOH . E 5 HOH A 90 690 2 HOH HOH . E 5 HOH A 91 691 12 HOH HOH . E 5 HOH A 92 692 124 HOH HOH . E 5 HOH A 93 693 99 HOH HOH . E 5 HOH A 94 694 91 HOH HOH . E 5 HOH A 95 695 97 HOH HOH . E 5 HOH A 96 696 17 HOH HOH . E 5 HOH A 97 697 62 HOH HOH . E 5 HOH A 98 698 72 HOH HOH . E 5 HOH A 99 699 9 HOH HOH . E 5 HOH A 100 700 49 HOH HOH . E 5 HOH A 101 701 101 HOH HOH . E 5 HOH A 102 702 44 HOH HOH . E 5 HOH A 103 703 118 HOH HOH . E 5 HOH A 104 704 74 HOH HOH . E 5 HOH A 105 705 39 HOH HOH . E 5 HOH A 106 706 123 HOH HOH . E 5 HOH A 107 707 32 HOH HOH . E 5 HOH A 108 708 89 HOH HOH . E 5 HOH A 109 709 120 HOH HOH . E 5 HOH A 110 710 83 HOH HOH . F 5 HOH B 1 701 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 20.566 -4.343 32.085 1 29.23 ? C1 GOL 502 A 1 HETATM 2 O O1 GOL . . . D 4 21.912 -4.313 32.442 1 37.12 ? O1 GOL 502 A 1 HETATM 3 C C2 GOL . . . D 4 20.076 -2.949 32.492 1 38.97 ? C2 GOL 502 A 1 HETATM 4 O O2 GOL . . . D 4 19.78 -2.216 31.35 1 27.83 ? O2 GOL 502 A 1 HETATM 5 C C3 GOL . . . D 4 18.847 -2.977 33.371 1 34.25 ? C3 GOL 502 A 1 HETATM 6 O O3 GOL . . . D 4 19.077 -3.798 34.495 1 28.34 ? O3 GOL 502 A 1 HETATM 7 H H11 GOL . . . D 4 20.468 -4.476 31.129 1 35.08 ? H11 GOL 502 A 1 HETATM 8 H H12 GOL . . . D 4 20.095 -5.032 32.579 1 35.08 ? H12 GOL 502 A 1 HETATM 9 H HO1 GOL . . . D 4 22.291 -3.653 32.065 1 44.55 ? HO1 GOL 502 A 1 HETATM 10 H H2 GOL . . . D 4 20.789 -2.499 32.973 1 46.77 ? H2 GOL 502 A 1 HETATM 11 H HO2 GOL . . . D 4 19.754 -1.388 31.543 1 33.4 ? HO2 GOL 502 A 1 HETATM 12 H H31 GOL . . . D 4 18.098 -3.327 32.864 1 41.11 ? H31 GOL 502 A 1 HETATM 13 H H32 GOL . . . D 4 18.643 -2.076 33.667 1 41.11 ? H32 GOL 502 A 1 HETATM 14 H HO3 GOL . . . D 4 18.964 -4.612 34.279 1 34.02 ? HO3 GOL 502 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #