data_7BQ3 # _model_server_result.job_id K3-0St7TjkiCWwLlpfNs2w _model_server_result.datetime_utc '2024-11-23 12:19:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bq3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7BQ3 # _exptl.entry_id 7BQ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 502.752 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[(4-{2-[(4-cyclohexylbutyl)(cyclohexylcarbamoyl)amino]ethyl}phenyl)sulfanyl]-2-methylpropanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.48 _cell.angle_gamma 90 _cell.entry_id 7BQ3 _cell.length_a 46.329 _cell.length_b 61.494 _cell.length_c 53.218 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BQ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H46 N2 O3 S' _chem_comp.formula_weight 502.752 _chem_comp.id 2VN _chem_comp.mon_nstd_flag . _chem_comp.name '2-[(4-{2-[(4-cyclohexylbutyl)(cyclohexylcarbamoyl)amino]ethyl}phenyl)sulfanyl]-2-methylpropanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 2VN sing 1 n n C10 C11 2VN sing 2 n n C14 C15 2VN sing 3 n n C14 C13 2VN sing 4 n n N1 C2 2VN sing 5 n n N1 C7 2VN sing 6 n n C9 N2 2VN sing 7 n n O3 C27 2VN doub 8 n n C3 C2 2VN sing 9 n n C3 C4 2VN sing 10 n n C11 C12 2VN sing 11 n n C15 C16 2VN sing 12 n n C2 C1 2VN sing 13 n n O2 C27 2VN sing 14 n n C27 C26 2VN sing 15 n n C13 C12 2VN sing 16 n n C13 C18 2VN sing 17 n n C7 O1 2VN doub 18 n n C7 N2 2VN sing 19 n n C29 C26 2VN sing 20 n n C28 C26 2VN sing 21 n n N2 C8 2VN sing 22 n n C26 S1 2VN sing 23 n n C4 C55 2VN sing 24 n n C16 C17 2VN sing 25 n n C18 C17 2VN sing 26 n n C1 C6 2VN sing 27 n n C8 C19 2VN sing 28 n n C55 C6 2VN sing 29 n n S1 C23 2VN sing 30 n n C22 C23 2VN doub 31 n y C22 C21 2VN sing 32 n y C23 C24 2VN sing 33 n y C21 C20 2VN doub 34 n y C24 C25 2VN doub 35 n y C20 C25 2VN sing 36 n y C20 C19 2VN sing 37 n n C1 H2 2VN sing 38 n n C1 H1 2VN sing 39 n n C10 H18 2VN sing 40 n n C10 H17 2VN sing 41 n n C11 H20 2VN sing 42 n n C11 H19 2VN sing 43 n n C12 H22 2VN sing 44 n n C12 H21 2VN sing 45 n n C13 H23 2VN sing 46 n n C14 H24 2VN sing 47 n n C14 H25 2VN sing 48 n n C15 H26 2VN sing 49 n n C15 H27 2VN sing 50 n n C16 H28 2VN sing 51 n n C16 H29 2VN sing 52 n n C17 H31 2VN sing 53 n n C17 H30 2VN sing 54 n n C18 H32 2VN sing 55 n n C18 H33 2VN sing 56 n n C19 H35 2VN sing 57 n n C19 H34 2VN sing 58 n n C2 H3 2VN sing 59 n n C21 HK6 2VN sing 60 n n C22 HL7 2VN sing 61 n n C24 HL8 2VN sing 62 n n C25 HK9 2VN sing 63 n n C28 HJ2 2VN sing 64 n n C28 HJ1 2VN sing 65 n n C28 HJ0 2VN sing 66 n n C29 HJ4 2VN sing 67 n n C29 HJ5 2VN sing 68 n n C29 HJ3 2VN sing 69 n n C3 H4 2VN sing 70 n n C3 H5 2VN sing 71 n n C4 H7 2VN sing 72 n n C4 H6 2VN sing 73 n n C55 H9 2VN sing 74 n n C55 H8 2VN sing 75 n n C6 H11 2VN sing 76 n n C6 H10 2VN sing 77 n n C8 H14 2VN sing 78 n n C8 H13 2VN sing 79 n n C9 H16 2VN sing 80 n n C9 H15 2VN sing 81 n n N1 H12 2VN sing 82 n n O2 H36 2VN sing 83 n n # _atom_sites.entry_id 7BQ3 _atom_sites.fract_transf_matrix[1][1] 0.021585 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001312 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018825 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 2VN A 1 501 1 2VN G77 . D 4 HOH A 1 601 29 HOH HOH . D 4 HOH A 2 602 24 HOH HOH . D 4 HOH A 3 603 42 HOH HOH . D 4 HOH A 4 604 19 HOH HOH . D 4 HOH A 5 605 40 HOH HOH . D 4 HOH A 6 606 14 HOH HOH . D 4 HOH A 7 607 31 HOH HOH . D 4 HOH A 8 608 2 HOH HOH . D 4 HOH A 9 609 26 HOH HOH . D 4 HOH A 10 610 1 HOH HOH . D 4 HOH A 11 611 38 HOH HOH . D 4 HOH A 12 612 32 HOH HOH . D 4 HOH A 13 613 10 HOH HOH . D 4 HOH A 14 614 33 HOH HOH . D 4 HOH A 15 615 6 HOH HOH . D 4 HOH A 16 616 9 HOH HOH . D 4 HOH A 17 617 5 HOH HOH . D 4 HOH A 18 618 15 HOH HOH . D 4 HOH A 19 619 30 HOH HOH . D 4 HOH A 20 620 12 HOH HOH . D 4 HOH A 21 621 11 HOH HOH . D 4 HOH A 22 622 17 HOH HOH . D 4 HOH A 23 623 4 HOH HOH . D 4 HOH A 24 624 13 HOH HOH . D 4 HOH A 25 625 21 HOH HOH . D 4 HOH A 26 626 36 HOH HOH . D 4 HOH A 27 627 16 HOH HOH . D 4 HOH A 28 628 18 HOH HOH . D 4 HOH A 29 629 3 HOH HOH . D 4 HOH A 30 630 7 HOH HOH . D 4 HOH A 31 631 35 HOH HOH . D 4 HOH A 32 632 37 HOH HOH . D 4 HOH A 33 633 27 HOH HOH . D 4 HOH A 34 634 8 HOH HOH . D 4 HOH A 35 635 22 HOH HOH . D 4 HOH A 36 636 41 HOH HOH . D 4 HOH A 37 637 28 HOH HOH . D 4 HOH A 38 638 20 HOH HOH . D 4 HOH A 39 639 23 HOH HOH . D 4 HOH A 40 640 34 HOH HOH . E 4 HOH B 1 701 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C26 2VN . . . C 3 5.97 0.39 32.171 1 43.29 ? C26 2VN 501 A 1 HETATM 2 C C1 2VN . . . C 3 15.758 5.419 30.624 1 31.19 ? C1 2VN 501 A 1 HETATM 3 C C10 2VN . . . C 3 12.754 5.269 35.913 1 27.05 ? C10 2VN 501 A 1 HETATM 4 C C11 2VN . . . C 3 13.067 5.475 37.412 1 30.12 ? C11 2VN 501 A 1 HETATM 5 C C12 2VN . . . C 3 12.478 6.779 37.92 1 26.96 ? C12 2VN 501 A 1 HETATM 6 C C13 2VN . . . C 3 12.888 7.028 39.375 1 30.01 ? C13 2VN 501 A 1 HETATM 7 C C14 2VN . . . C 3 12.06 6.171 40.312 1 29.16 ? C14 2VN 501 A 1 HETATM 8 C C15 2VN . . . C 3 12.35 6.502 41.78 1 33.84 ? C15 2VN 501 A 1 HETATM 9 C C16 2VN . . . C 3 12.189 7.968 42.135 1 35.76 ? C16 2VN 501 A 1 HETATM 10 C C17 2VN . . . C 3 12.975 8.832 41.133 1 37.23 ? C17 2VN 501 A 1 HETATM 11 C C18 2VN . . . C 3 12.653 8.495 39.688 1 34.99 ? C18 2VN 501 A 1 HETATM 12 C C19 2VN . . . C 3 12.575 1.484 33.33 1 36.31 ? C19 2VN 501 A 1 HETATM 13 C C2 2VN . . . C 3 15.669 3.946 30.998 1 31.49 ? C2 2VN 501 A 1 HETATM 14 C C20 2VN . . . C 3 11.194 0.84 33.151 1 34.53 ? C20 2VN 501 A 1 HETATM 15 C C21 2VN . . . C 3 10.503 0.528 34.298 1 36.62 ? C21 2VN 501 A 1 HETATM 16 C C22 2VN . . . C 3 9.237 0.001 34.209 1 38.21 ? C22 2VN 501 A 1 HETATM 17 C C23 2VN . . . C 3 8.653 -0.233 32.998 1 38.31 ? C23 2VN 501 A 1 HETATM 18 C C24 2VN . . . C 3 9.338 0.065 31.816 1 36.45 ? C24 2VN 501 A 1 HETATM 19 C C25 2VN . . . C 3 10.616 0.611 31.896 1 39.76 ? C25 2VN 501 A 1 HETATM 20 C C27 2VN . . . C 3 6.512 0.334 30.765 1 43.58 ? C27 2VN 501 A 1 HETATM 21 C C28 2VN . . . C 3 4.485 0.004 32.1 1 41.97 ? C28 2VN 501 A 1 HETATM 22 C C29 2VN . . . C 3 6.204 1.776 32.783 1 35.56 ? C29 2VN 501 A 1 HETATM 23 C C3 2VN . . . C 3 15.541 3.011 29.771 1 26.36 ? C3 2VN 501 A 1 HETATM 24 C C4 2VN . . . C 3 16.686 3.22 28.787 1 29.45 ? C4 2VN 501 A 1 HETATM 25 C C55 2VN . . . C 3 16.876 4.7 28.417 1 31.14 ? C55 2VN 501 A 1 HETATM 26 C C6 2VN . . . C 3 16.931 5.601 29.655 1 32.2 ? C6 2VN 501 A 1 HETATM 27 C C7 2VN . . . C 3 14.57 3.992 33.255 1 29.36 ? C7 2VN 501 A 1 HETATM 28 C C8 2VN . . . C 3 12.271 3.013 33.431 1 29.68 ? C8 2VN 501 A 1 HETATM 29 C C9 2VN . . . C 3 13.379 3.944 35.476 1 31.51 ? C9 2VN 501 A 1 HETATM 30 N N2 2VN . . . C 3 13.399 3.677 34.035 1 30.01 ? N2 2VN 501 A 1 HETATM 31 N N1 2VN . . . C 3 14.523 3.686 31.823 1 29.06 ? N1 2VN 501 A 1 HETATM 32 O O2 2VN . . . C 3 6.635 1.363 30.014 1 42.87 -1 O2 2VN 501 A 1 HETATM 33 O O1 2VN . . . C 3 15.523 4.508 33.758 1 25.99 ? O1 2VN 501 A 1 HETATM 34 O O3 2VN . . . C 3 6.847 -0.844 30.423 1 43.27 ? O3 2VN 501 A 1 HETATM 35 S S1 2VN . . . C 3 6.956 -0.911 32.982 1 46.32 ? S1 2VN 501 A 1 HETATM 36 H H2 2VN . . . C 3 14.935 5.697 30.194 1 37.43 ? H2 2VN 501 A 1 HETATM 37 H H1 2VN . . . C 3 15.911 5.949 31.422 1 37.43 ? H1 2VN 501 A 1 HETATM 38 H H18 2VN . . . C 3 11.794 5.237 35.78 1 32.46 ? H18 2VN 501 A 1 HETATM 39 H H17 2VN . . . C 3 13.133 5.997 35.396 1 32.46 ? H17 2VN 501 A 1 HETATM 40 H H20 2VN . . . C 3 12.693 4.738 37.919 1 36.14 ? H20 2VN 501 A 1 HETATM 41 H H19 2VN . . . C 3 14.029 5.491 37.536 1 36.14 ? H19 2VN 501 A 1 HETATM 42 H H22 2VN . . . C 3 12.797 7.51 37.369 1 32.35 ? H22 2VN 501 A 1 HETATM 43 H H21 2VN . . . C 3 11.511 6.735 37.864 1 32.35 ? H21 2VN 501 A 1 HETATM 44 H H23 2VN . . . C 3 13.828 6.819 39.492 1 36.01 ? H23 2VN 501 A 1 HETATM 45 H H24 2VN . . . C 3 11.119 6.326 40.133 1 34.99 ? H24 2VN 501 A 1 HETATM 46 H H25 2VN . . . C 3 12.267 5.237 40.152 1 34.99 ? H25 2VN 501 A 1 HETATM 47 H H26 2VN . . . C 3 11.746 5.984 42.336 1 40.61 ? H26 2VN 501 A 1 HETATM 48 H H27 2VN . . . C 3 13.262 6.237 41.979 1 40.61 ? H27 2VN 501 A 1 HETATM 49 H H28 2VN . . . C 3 11.249 8.206 42.097 1 42.9 ? H28 2VN 501 A 1 HETATM 50 H H29 2VN . . . C 3 12.53 8.121 43.029 1 42.9 ? H29 2VN 501 A 1 HETATM 51 H H31 2VN . . . C 3 12.76 9.765 41.29 1 44.68 ? H31 2VN 501 A 1 HETATM 52 H H30 2VN . . . C 3 13.924 8.696 41.281 1 44.68 ? H30 2VN 501 A 1 HETATM 53 H H32 2VN . . . C 3 13.215 9.033 39.108 1 41.98 ? H32 2VN 501 A 1 HETATM 54 H H33 2VN . . . C 3 11.722 8.707 39.516 1 41.98 ? H33 2VN 501 A 1 HETATM 55 H H35 2VN . . . C 3 12.994 1.167 34.145 1 43.57 ? H35 2VN 501 A 1 HETATM 56 H H34 2VN . . . C 3 13.138 1.299 32.562 1 43.57 ? H34 2VN 501 A 1 HETATM 57 H H3 2VN . . . C 3 16.47 3.704 31.488 1 37.79 ? H3 2VN 501 A 1 HETATM 58 H HK6 2VN . . . C 3 10.879 0.701 35.131 1 43.94 ? HK6 2VN 501 A 1 HETATM 59 H HL7 2VN . . . C 3 8.768 -0.196 34.988 1 45.85 ? HL7 2VN 501 A 1 HETATM 60 H HL8 2VN . . . C 3 8.938 -0.083 30.989 1 43.73 ? HL8 2VN 501 A 1 HETATM 61 H HK9 2VN . . . C 3 11.081 0.828 31.121 1 47.7 ? HK9 2VN 501 A 1 HETATM 62 H HJ2 2VN . . . C 3 3.984 0.721 31.68 1 50.36 ? HJ2 2VN 501 A 1 HETATM 63 H HJ1 2VN . . . C 3 4.386 -0.808 31.578 1 50.36 ? HJ1 2VN 501 A 1 HETATM 64 H HJ0 2VN . . . C 3 4.146 -0.145 32.996 1 50.36 ? HJ0 2VN 501 A 1 HETATM 65 H HJ4 2VN . . . C 3 7.155 1.965 32.802 1 42.67 ? HJ4 2VN 501 A 1 HETATM 66 H HJ5 2VN . . . C 3 5.752 2.447 32.248 1 42.67 ? HJ5 2VN 501 A 1 HETATM 67 H HJ3 2VN . . . C 3 5.854 1.794 33.688 1 42.67 ? HJ3 2VN 501 A 1 HETATM 68 H H4 2VN . . . C 3 14.702 3.195 29.321 1 31.63 ? H4 2VN 501 A 1 HETATM 69 H H5 2VN . . . C 3 15.549 2.09 30.073 1 31.63 ? H5 2VN 501 A 1 HETATM 70 H H7 2VN . . . C 3 16.501 2.717 27.979 1 35.34 ? H7 2VN 501 A 1 HETATM 71 H H6 2VN . . . C 3 17.506 2.89 29.187 1 35.34 ? H6 2VN 501 A 1 HETATM 72 H H9 2VN . . . C 3 17.704 4.796 27.921 1 37.37 ? H9 2VN 501 A 1 HETATM 73 H H8 2VN . . . C 3 16.135 4.98 27.857 1 37.37 ? H8 2VN 501 A 1 HETATM 74 H H11 2VN . . . C 3 17.754 5.413 30.132 1 38.63 ? H11 2VN 501 A 1 HETATM 75 H H10 2VN . . . C 3 16.944 6.525 29.36 1 38.63 ? H10 2VN 501 A 1 HETATM 76 H H14 2VN . . . C 3 11.482 3.152 33.977 1 35.61 ? H14 2VN 501 A 1 HETATM 77 H H13 2VN . . . C 3 12.119 3.373 32.543 1 35.61 ? H13 2VN 501 A 1 HETATM 78 H H16 2VN . . . C 3 12.892 3.225 35.908 1 37.81 ? H16 2VN 501 A 1 HETATM 79 H H15 2VN . . . C 3 14.295 3.924 35.797 1 37.81 ? H15 2VN 501 A 1 HETATM 80 H H12 2VN . . . C 3 13.837 3.286 31.492 1 34.87 ? H12 2VN 501 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 80 #