data_7BQ4 # _model_server_result.job_id YUkqZJJH8rNTr1z4RTOEog _model_server_result.datetime_utc '2024-10-30 22:15:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bq4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7BQ4 # _exptl.entry_id 7BQ4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.451 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5,8,11,14,17-EICOSAPENTAENOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.76 _cell.angle_gamma 90 _cell.entry_id 7BQ4 _cell.length_a 44.969 _cell.length_b 61.482 _cell.length_c 53.116 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BQ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H30 O2' _chem_comp.formula_weight 302.451 _chem_comp.id EPA _chem_comp.mon_nstd_flag . _chem_comp.name '5,8,11,14,17-EICOSAPENTAENOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 OA EPA sing 83 n n C1 OB EPA doub 84 n n C1 C2 EPA sing 85 n n OA HOA EPA sing 86 n n C2 C3 EPA sing 87 n n C2 H21 EPA sing 88 n n C2 H22 EPA sing 89 n n C3 C4 EPA sing 90 n n C3 H31 EPA sing 91 n n C3 H32 EPA sing 92 n n C4 C5 EPA sing 93 n n C4 H41 EPA sing 94 n n C4 H42 EPA sing 95 n n C5 C6 EPA doub 96 z n C5 H51 EPA sing 97 n n C6 C7 EPA sing 98 n n C6 H61 EPA sing 99 n n C7 C8 EPA sing 100 n n C7 H71 EPA sing 101 n n C7 H72 EPA sing 102 n n C8 C9 EPA doub 103 z n C8 H81 EPA sing 104 n n C9 C10 EPA sing 105 n n C9 H91 EPA sing 106 n n C10 C11 EPA sing 107 n n C10 H101 EPA sing 108 n n C10 H102 EPA sing 109 n n C11 C12 EPA doub 110 z n C11 H111 EPA sing 111 n n C12 C13 EPA sing 112 n n C12 H121 EPA sing 113 n n C13 C14 EPA sing 114 n n C13 H131 EPA sing 115 n n C13 H132 EPA sing 116 n n C14 C15 EPA doub 117 z n C14 H141 EPA sing 118 n n C15 C16 EPA sing 119 n n C15 H151 EPA sing 120 n n C16 C17 EPA sing 121 n n C16 H161 EPA sing 122 n n C16 H162 EPA sing 123 n n C17 C18 EPA doub 124 z n C17 H171 EPA sing 125 n n C18 C19 EPA sing 126 n n C18 H181 EPA sing 127 n n C19 C20 EPA sing 128 n n C19 H191 EPA sing 129 n n C19 H192 EPA sing 130 n n C20 H201 EPA sing 131 n n C20 H202 EPA sing 132 n n C20 H203 EPA sing 133 n n # _atom_sites.entry_id 7BQ4 _atom_sites.fract_transf_matrix[1][1] 0.022238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006697 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EPA A 1 501 1 EPA EPA . D 4 GOL A 1 502 1 GOL GOL . E 5 HOH A 1 601 90 HOH HOH . E 5 HOH A 2 602 107 HOH HOH . E 5 HOH A 3 603 111 HOH HOH . E 5 HOH A 4 604 26 HOH HOH . E 5 HOH A 5 605 13 HOH HOH . E 5 HOH A 6 606 33 HOH HOH . E 5 HOH A 7 607 99 HOH HOH . E 5 HOH A 8 608 113 HOH HOH . E 5 HOH A 9 609 36 HOH HOH . E 5 HOH A 10 610 2 HOH HOH . E 5 HOH A 11 611 95 HOH HOH . E 5 HOH A 12 612 14 HOH HOH . E 5 HOH A 13 613 62 HOH HOH . E 5 HOH A 14 614 43 HOH HOH . E 5 HOH A 15 615 58 HOH HOH . E 5 HOH A 16 616 41 HOH HOH . E 5 HOH A 17 617 29 HOH HOH . E 5 HOH A 18 618 21 HOH HOH . E 5 HOH A 19 619 55 HOH HOH . E 5 HOH A 20 620 101 HOH HOH . E 5 HOH A 21 621 23 HOH HOH . E 5 HOH A 22 622 66 HOH HOH . E 5 HOH A 23 623 19 HOH HOH . E 5 HOH A 24 624 3 HOH HOH . E 5 HOH A 25 625 9 HOH HOH . E 5 HOH A 26 626 32 HOH HOH . E 5 HOH A 27 627 7 HOH HOH . E 5 HOH A 28 628 110 HOH HOH . E 5 HOH A 29 629 11 HOH HOH . E 5 HOH A 30 630 105 HOH HOH . E 5 HOH A 31 631 46 HOH HOH . E 5 HOH A 32 632 69 HOH HOH . E 5 HOH A 33 633 98 HOH HOH . E 5 HOH A 34 634 12 HOH HOH . E 5 HOH A 35 635 8 HOH HOH . E 5 HOH A 36 636 78 HOH HOH . E 5 HOH A 37 637 112 HOH HOH . E 5 HOH A 38 638 37 HOH HOH . E 5 HOH A 39 639 24 HOH HOH . E 5 HOH A 40 640 97 HOH HOH . E 5 HOH A 41 641 25 HOH HOH . E 5 HOH A 42 642 28 HOH HOH . E 5 HOH A 43 643 51 HOH HOH . E 5 HOH A 44 644 72 HOH HOH . E 5 HOH A 45 645 117 HOH HOH . E 5 HOH A 46 646 76 HOH HOH . E 5 HOH A 47 647 71 HOH HOH . E 5 HOH A 48 648 88 HOH HOH . E 5 HOH A 49 649 16 HOH HOH . E 5 HOH A 50 650 106 HOH HOH . E 5 HOH A 51 651 6 HOH HOH . E 5 HOH A 52 652 61 HOH HOH . E 5 HOH A 53 653 50 HOH HOH . E 5 HOH A 54 654 18 HOH HOH . E 5 HOH A 55 655 120 HOH HOH . E 5 HOH A 56 656 91 HOH HOH . E 5 HOH A 57 657 4 HOH HOH . E 5 HOH A 58 658 5 HOH HOH . E 5 HOH A 59 659 82 HOH HOH . E 5 HOH A 60 660 48 HOH HOH . E 5 HOH A 61 661 109 HOH HOH . E 5 HOH A 62 662 121 HOH HOH . E 5 HOH A 63 663 104 HOH HOH . E 5 HOH A 64 664 80 HOH HOH . E 5 HOH A 65 665 20 HOH HOH . E 5 HOH A 66 666 83 HOH HOH . E 5 HOH A 67 667 39 HOH HOH . E 5 HOH A 68 668 116 HOH HOH . E 5 HOH A 69 669 38 HOH HOH . E 5 HOH A 70 670 74 HOH HOH . E 5 HOH A 71 671 47 HOH HOH . E 5 HOH A 72 672 56 HOH HOH . E 5 HOH A 73 673 59 HOH HOH . E 5 HOH A 74 674 57 HOH HOH . E 5 HOH A 75 675 94 HOH HOH . E 5 HOH A 76 676 103 HOH HOH . E 5 HOH A 77 677 67 HOH HOH . E 5 HOH A 78 678 30 HOH HOH . E 5 HOH A 79 679 22 HOH HOH . E 5 HOH A 80 680 81 HOH HOH . E 5 HOH A 81 681 77 HOH HOH . E 5 HOH A 82 682 35 HOH HOH . E 5 HOH A 83 683 115 HOH HOH . E 5 HOH A 84 684 108 HOH HOH . E 5 HOH A 85 685 15 HOH HOH . E 5 HOH A 86 686 118 HOH HOH . E 5 HOH A 87 687 10 HOH HOH . E 5 HOH A 88 688 84 HOH HOH . E 5 HOH A 89 689 44 HOH HOH . E 5 HOH A 90 690 92 HOH HOH . E 5 HOH A 91 691 93 HOH HOH . E 5 HOH A 92 692 100 HOH HOH . E 5 HOH A 93 693 17 HOH HOH . E 5 HOH A 94 694 89 HOH HOH . E 5 HOH A 95 695 45 HOH HOH . E 5 HOH A 96 696 102 HOH HOH . E 5 HOH A 97 697 73 HOH HOH . E 5 HOH A 98 698 119 HOH HOH . E 5 HOH A 99 699 85 HOH HOH . E 5 HOH A 100 700 49 HOH HOH . E 5 HOH A 101 701 86 HOH HOH . E 5 HOH A 102 702 79 HOH HOH . E 5 HOH A 103 703 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EPA . . . C 3 -0.16 -0.079 26.809 1 20.98 ? C1 EPA 501 A 1 HETATM 2 O OA EPA . . . C 3 0.193 0.903 26.1 1 20.35 -1 OA EPA 501 A 1 HETATM 3 O OB EPA . . . C 3 -0.72 -1.071 26.277 1 21.19 ? OB EPA 501 A 1 HETATM 4 C C2 EPA . . . C 3 0.132 -0.079 28.305 1 24.34 ? C2 EPA 501 A 1 HETATM 5 C C3 EPA . . . C 3 1.62 -0.407 28.414 1 27.05 ? C3 EPA 501 A 1 HETATM 6 C C4 EPA . . . C 3 1.904 -1.101 29.733 1 32.39 ? C4 EPA 501 A 1 HETATM 7 C C5 EPA . . . C 3 3.341 -1.599 29.642 1 28.57 ? C5 EPA 501 A 1 HETATM 8 C C6 EPA . . . C 3 4.371 -0.816 29.908 1 26.59 ? C6 EPA 501 A 1 HETATM 9 C C7 EPA . . . C 3 4.205 0.642 30.335 1 29.96 ? C7 EPA 501 A 1 HETATM 10 C C8 EPA . . . C 3 5.587 1.264 30.532 1 26.5 ? C8 EPA 501 A 1 HETATM 11 C C9 EPA . . . C 3 6.018 1.859 31.629 1 24.31 ? C9 EPA 501 A 1 HETATM 12 C C10 EPA . . . C 3 5.209 2.017 32.911 1 28.38 ? C10 EPA 501 A 1 HETATM 13 C C11 EPA . . . C 3 4.89 3.498 33.083 1 29.61 ? C11 EPA 501 A 1 HETATM 14 C C12 EPA . . . C 3 4.384 3.95 34.21 1 26.07 ? C12 EPA 501 A 1 HETATM 15 C C13 EPA . . . C 3 4.105 3.001 35.378 1 27.87 ? C13 EPA 501 A 1 HETATM 16 C C14 EPA . . . C 3 2.92 3.534 36.168 1 30.34 ? C14 EPA 501 A 1 HETATM 17 C C15 EPA . . . C 3 3.004 4.492 37.071 1 31.54 ? C15 EPA 501 A 1 HETATM 18 C C16 EPA . . . C 3 4.295 5.195 37.438 1 32.25 ? C16 EPA 501 A 1 HETATM 19 C C17 EPA . . . C 3 4.27 6.567 36.766 1 30.36 ? C17 EPA 501 A 1 HETATM 20 C C18 EPA . . . C 3 3.883 7.666 37.378 1 32.75 ? C18 EPA 501 A 1 HETATM 21 C C19 EPA . . . C 3 3.417 7.718 38.829 1 32.35 ? C19 EPA 501 A 1 HETATM 22 C C20 EPA . . . C 3 4.097 8.919 39.473 1 32.35 ? C20 EPA 501 A 1 HETATM 23 H H21 EPA . . . C 3 -0.397 -0.758 28.752 1 29.21 ? H21 EPA 501 A 1 HETATM 24 H H22 EPA . . . C 3 -0.05 0.795 28.684 1 29.21 ? H22 EPA 501 A 1 HETATM 25 H H31 EPA . . . C 3 2.134 0.414 28.365 1 32.46 ? H31 EPA 501 A 1 HETATM 26 H H32 EPA . . . C 3 1.875 -0.991 27.682 1 32.46 ? H32 EPA 501 A 1 HETATM 27 H H41 EPA . . . C 3 1.813 -0.473 30.467 1 38.86 ? H41 EPA 501 A 1 HETATM 28 H H42 EPA . . . C 3 1.298 -1.848 29.855 1 38.86 ? H42 EPA 501 A 1 HETATM 29 H H51 EPA . . . C 3 3.498 -2.48 29.387 1 34.28 ? H51 EPA 501 A 1 HETATM 30 H H61 EPA . . . C 3 5.23 -1.167 29.839 1 31.91 ? H61 EPA 501 A 1 HETATM 31 H H71 EPA . . . C 3 3.725 1.129 29.647 1 35.95 ? H71 EPA 501 A 1 HETATM 32 H H72 EPA . . . C 3 3.709 0.682 31.167 1 35.95 ? H72 EPA 501 A 1 HETATM 33 H H81 EPA . . . C 3 6.174 1.229 29.812 1 31.8 ? H81 EPA 501 A 1 HETATM 34 H H91 EPA . . . C 3 6.883 2.199 31.622 1 29.17 ? H91 EPA 501 A 1 HETATM 35 H H101 EPA . . . C 3 4.385 1.509 32.844 1 34.06 ? H101 EPA 501 A 1 HETATM 36 H H102 EPA . . . C 3 5.728 1.702 33.668 1 34.06 ? H102 EPA 501 A 1 HETATM 37 H H111 EPA . . . C 3 5.054 4.088 32.383 1 35.53 ? H111 EPA 501 A 1 HETATM 38 H H121 EPA . . . C 3 4.196 4.857 34.298 1 31.28 ? H121 EPA 501 A 1 HETATM 39 H H131 EPA . . . C 3 3.897 2.117 35.037 1 33.44 ? H131 EPA 501 A 1 HETATM 40 H H132 EPA . . . C 3 4.884 2.954 35.953 1 33.44 ? H132 EPA 501 A 1 HETATM 41 H H141 EPA . . . C 3 2.085 3.158 36.007 1 36.41 ? H141 EPA 501 A 1 HETATM 42 H H151 EPA . . . C 3 2.224 4.753 37.505 1 37.85 ? H151 EPA 501 A 1 HETATM 43 H H161 EPA . . . C 3 4.353 5.299 38.4 1 38.7 ? H161 EPA 501 A 1 HETATM 44 H H162 EPA . . . C 3 5.053 4.683 37.115 1 38.7 ? H162 EPA 501 A 1 HETATM 45 H H171 EPA . . . C 3 4.54 6.628 35.878 1 36.43 ? H171 EPA 501 A 1 HETATM 46 H H181 EPA . . . C 3 3.898 8.462 36.896 1 39.3 ? H181 EPA 501 A 1 HETATM 47 H H191 EPA . . . C 3 2.453 7.825 38.863 1 38.82 ? H191 EPA 501 A 1 HETATM 48 H H192 EPA . . . C 3 3.676 6.904 39.289 1 38.82 ? H192 EPA 501 A 1 HETATM 49 H H201 EPA . . . C 3 3.747 9.047 40.368 1 38.82 ? H201 EPA 501 A 1 HETATM 50 H H202 EPA . . . C 3 5.053 8.763 39.518 1 38.82 ? H202 EPA 501 A 1 HETATM 51 H H203 EPA . . . C 3 3.924 9.712 38.942 1 38.82 ? H203 EPA 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 51 #