data_7BQU
#
_model_server_result.job_id            Gndqge9EocTU_hVsU_lkGQ 
_model_server_result.datetime_utc      '2024-11-05 23:03:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bqu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    7BQU 
#
_exptl.entry_id    7BQU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              258.229 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-Thalidomide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BQU 
_cell.length_a            70.962 
_cell.length_b            92.718 
_cell.length_c            43.986 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BQU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 11 A CYS 323 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc2 A SG CYS 14 A CYS 326 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc3 A SG CYS 79 A CYS 391 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc4 A SG CYS 82 A CYS 394 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc5 B SG CYS 8 B CYS 412 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc6 B SG CYS 11 B CYS 415 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc7 B NE2 HIS 24 B HIS 428 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc8 B NE2 HIS 28 B HIS 432 1_555 E ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? 
#
_chem_comp.formula           'C13 H10 N2 O4' 
_chem_comp.formula_weight    258.229 
_chem_comp.id                EF2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-Thalidomide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C02 EF2 doub 83 n n 
C02 N03 EF2 sing 84 n n 
C02 C08 EF2 sing 85 n n 
N03 C04 EF2 sing 86 n n 
C04 O05 EF2 doub 87 n n 
C04 C06 EF2 sing 88 n n 
C06 C07 EF2 sing 89 n n 
C07 C08 EF2 sing 90 n n 
C08 N09 EF2 sing 91 n n 
N09 C3 EF2 sing 92 n n 
N09 C4 EF2 sing 93 n n 
C11 C12 EF2 sing 94 n y 
C11 C20 EF2 doub 95 n y 
C12 C13 EF2 doub 96 n y 
C13 C14 EF2 sing 97 n y 
C13 C4 EF2 sing 98 n n 
C14 C19 EF2 doub 99 n y 
C14 C3 EF2 sing 100 n n 
O16 C4 EF2 doub 101 n n 
O18 C3 EF2 doub 102 n n 
C19 C20 EF2 sing 103 n y 
N03 H03 EF2 sing 104 n n 
C08 H08 EF2 sing 105 n n 
C06 H061 EF2 sing 106 n n 
C06 H062 EF2 sing 107 n n 
C07 H071 EF2 sing 108 n n 
C07 H072 EF2 sing 109 n n 
C11 H11 EF2 sing 110 n n 
C12 H12 EF2 sing 111 n n 
C20 H20 EF2 sing 112 n n 
C19 H19 EF2 sing 113 n n 
#
_atom_sites.entry_id                     7BQU 
_atom_sites.fract_transf_matrix[1][1]    0.014092 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010785 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022735 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EF2 A 1 501 501 EF2 EF2 . 
D 4 ZN A 1 502 502 ZN ZN . 
E 4 ZN B 1 501 503 ZN ZN . 
F 5 HOH A 1 601 617 HOH HOH . 
F 5 HOH A 2 602 609 HOH HOH . 
F 5 HOH A 3 603 541 HOH HOH . 
F 5 HOH A 4 604 604 HOH HOH . 
F 5 HOH A 5 605 526 HOH HOH . 
F 5 HOH A 6 606 606 HOH HOH . 
F 5 HOH A 7 607 538 HOH HOH . 
F 5 HOH A 8 608 605 HOH HOH . 
F 5 HOH A 9 609 509 HOH HOH . 
F 5 HOH A 10 610 512 HOH HOH . 
F 5 HOH A 11 611 603 HOH HOH . 
F 5 HOH A 12 612 540 HOH HOH . 
F 5 HOH A 13 613 513 HOH HOH . 
F 5 HOH A 14 614 537 HOH HOH . 
F 5 HOH A 15 615 515 HOH HOH . 
F 5 HOH A 16 616 607 HOH HOH . 
F 5 HOH A 17 617 516 HOH HOH . 
F 5 HOH A 18 618 552 HOH HOH . 
F 5 HOH A 19 619 514 HOH HOH . 
F 5 HOH A 20 620 539 HOH HOH . 
F 5 HOH A 21 621 535 HOH HOH . 
F 5 HOH A 22 622 612 HOH HOH . 
F 5 HOH A 23 623 611 HOH HOH . 
F 5 HOH A 24 624 518 HOH HOH . 
F 5 HOH A 25 625 529 HOH HOH . 
F 5 HOH A 26 626 551 HOH HOH . 
F 5 HOH A 27 627 527 HOH HOH . 
F 5 HOH A 28 628 615 HOH HOH . 
F 5 HOH A 29 629 524 HOH HOH . 
F 5 HOH A 30 630 559 HOH HOH . 
F 5 HOH A 31 631 610 HOH HOH . 
F 5 HOH A 32 632 543 HOH HOH . 
F 5 HOH A 33 633 525 HOH HOH . 
F 5 HOH A 34 634 523 HOH HOH . 
F 5 HOH A 35 635 582 HOH HOH . 
F 5 HOH A 36 636 508 HOH HOH . 
F 5 HOH A 37 637 507 HOH HOH . 
F 5 HOH A 38 638 511 HOH HOH . 
F 5 HOH A 39 639 608 HOH HOH . 
F 5 HOH A 40 640 585 HOH HOH . 
F 5 HOH A 41 641 597 HOH HOH . 
F 5 HOH A 42 642 517 HOH HOH . 
G 5 HOH B 1 601 519 HOH HOH . 
G 5 HOH B 2 602 534 HOH HOH . 
G 5 HOH B 3 603 546 HOH HOH . 
G 5 HOH B 4 604 616 HOH HOH . 
G 5 HOH B 5 605 554 HOH HOH . 
G 5 HOH B 6 606 545 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 EF2 . . . C 3 24.77 20.107 13.484 1 25.49 ? O01 EF2 501 A 1 
HETATM 2 C C02 EF2 . . . C 3 25.256 19.574 14.483 1 22.34 ? C02 EF2 501 A 1 
HETATM 3 N N03 EF2 . . . C 3 26.099 20.348 15.279 1 20.8 ? N03 EF2 501 A 1 
HETATM 4 C C04 EF2 . . . C 3 26.696 19.804 16.435 1 25.49 ? C04 EF2 501 A 1 
HETATM 5 O O05 EF2 . . . C 3 27.431 20.516 17.114 1 22.54 ? O05 EF2 501 A 1 
HETATM 6 C C06 EF2 . . . C 3 26.44 18.471 16.788 1 19.81 ? C06 EF2 501 A 1 
HETATM 7 C C07 EF2 . . . C 3 26.195 17.657 15.531 1 24.77 ? C07 EF2 501 A 1 
HETATM 8 C C08 EF2 . . . C 3 25 18.226 14.779 1 21.66 ? C08 EF2 501 A 1 
HETATM 9 N N09 EF2 . . . C 3 24.755 17.432 13.535 1 22.74 ? N09 EF2 501 A 1 
HETATM 10 C C11 EF2 . . . C 3 24.935 15.454 9.493 1 26.75 ? C11 EF2 501 A 1 
HETATM 11 C C12 EF2 . . . C 3 25.638 16.299 10.342 1 28.05 ? C12 EF2 501 A 1 
HETATM 12 C C13 EF2 . . . C 3 25.134 16.625 11.536 1 25.72 ? C13 EF2 501 A 1 
HETATM 13 C C14 EF2 . . . C 3 23.952 16.153 11.946 1 27.82 ? C14 EF2 501 A 1 
HETATM 14 O O16 EF2 . . . C 3 26.677 18.004 12.48 1 23.51 ? O16 EF2 501 A 1 
HETATM 15 O O18 EF2 . . . C 3 22.739 16.428 13.852 1 20.7 ? O18 EF2 501 A 1 
HETATM 16 C C19 EF2 . . . C 3 23.232 15.339 11.167 1 23.71 ? C19 EF2 501 A 1 
HETATM 17 C C20 EF2 . . . C 3 23.707 14.962 9.915 1 24.71 ? C20 EF2 501 A 1 
HETATM 18 C C3 EF2 . . . C 3 23.735 16.658 13.165 1 23.66 ? C3 EF2 501 A 1 
HETATM 19 C C4 EF2 . . . C 3 25.603 17.396 12.515 1 23.69 ? C4 EF2 501 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           19 
#