data_7BQV # _model_server_result.job_id r5uXsO6XvtaRG3n1_RaYwg _model_server_result.datetime_utc '2024-12-02 14:42:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bqv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 7BQV # _exptl.entry_id 7BQV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 274.229 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-5-oxidanyl-isoindole-1,3-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BQV _cell.length_a 83.621 _cell.length_b 93.895 _cell.length_c 43.682 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BQV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 6 A CYS 323 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc2 A SG CYS 9 A CYS 326 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc3 A SG CYS 74 A CYS 391 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc4 A SG CYS 77 A CYS 394 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 B SG CYS 4 B CYS 412 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc6 B SG CYS 7 B CYS 415 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc7 B NE2 HIS 20 B HIS 428 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc8 B NE2 HIS 24 B HIS 432 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C13 H10 N2 O5' _chem_comp.formula_weight 274.229 _chem_comp.id F4U _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-5-oxidanyl-isoindole-1,3-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAT CAB F4U sing 83 n n CAB CAC F4U doub 84 n y CAB CAA F4U sing 85 n y CAC CAD F4U sing 86 n y CAA CAF F4U doub 87 n y CAD CAE F4U doub 88 n y CAF CAE F4U sing 89 n y CAF CAI F4U sing 90 n n CAE CAG F4U sing 91 n n OAR CAI F4U doub 92 n n CAI N F4U sing 93 n n CAG N F4U sing 94 n n CAG OAS F4U doub 95 n n N CA F4U sing 96 n n O C F4U doub 97 n n C CA F4U sing 98 n n C NE2 F4U sing 99 n n CA CB F4U sing 100 n n NE2 CD F4U sing 101 n n CB CG F4U sing 102 n n CD CG F4U sing 103 n n CD OE1 F4U doub 104 n n CA H1 F4U sing 105 n n CB H2 F4U sing 106 n n CB H3 F4U sing 107 n n CG H4 F4U sing 108 n n CG H5 F4U sing 109 n n NE2 H6 F4U sing 110 n n CAA H7 F4U sing 111 n n CAC H8 F4U sing 112 n n CAD H9 F4U sing 113 n n OAT H10 F4U sing 114 n n # _atom_sites.entry_id 7BQV _atom_sites.fract_transf_matrix[1][1] 0.011959 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022893 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 F4U A 1 501 434 F4U 5TH . D 4 ZN A 1 502 436 ZN ZN . E 5 SO4 A 1 503 439 SO4 SO4 . F 4 ZN B 1 501 435 ZN ZN . G 5 SO4 B 1 502 437 SO4 SO4 . H 6 HOH A 1 601 498 HOH HOH . H 6 HOH A 2 602 455 HOH HOH . H 6 HOH A 3 603 466 HOH HOH . H 6 HOH A 4 604 441 HOH HOH . H 6 HOH A 5 605 461 HOH HOH . H 6 HOH A 6 606 442 HOH HOH . H 6 HOH A 7 607 457 HOH HOH . H 6 HOH A 8 608 453 HOH HOH . H 6 HOH A 9 609 445 HOH HOH . H 6 HOH A 10 610 444 HOH HOH . H 6 HOH A 11 611 488 HOH HOH . H 6 HOH A 12 612 496 HOH HOH . H 6 HOH A 13 613 463 HOH HOH . H 6 HOH A 14 614 450 HOH HOH . H 6 HOH A 15 615 464 HOH HOH . H 6 HOH A 16 616 440 HOH HOH . H 6 HOH A 17 617 479 HOH HOH . H 6 HOH A 18 618 467 HOH HOH . H 6 HOH A 19 619 468 HOH HOH . H 6 HOH A 20 620 446 HOH HOH . H 6 HOH A 21 621 456 HOH HOH . H 6 HOH A 22 622 462 HOH HOH . H 6 HOH A 23 623 452 HOH HOH . H 6 HOH A 24 624 478 HOH HOH . H 6 HOH A 25 625 493 HOH HOH . H 6 HOH A 26 626 471 HOH HOH . H 6 HOH A 27 627 470 HOH HOH . H 6 HOH A 28 628 473 HOH HOH . H 6 HOH A 29 629 486 HOH HOH . H 6 HOH A 30 630 474 HOH HOH . H 6 HOH A 31 631 476 HOH HOH . H 6 HOH A 32 632 460 HOH HOH . H 6 HOH A 33 633 477 HOH HOH . H 6 HOH A 34 634 454 HOH HOH . H 6 HOH A 35 635 465 HOH HOH . H 6 HOH A 36 636 472 HOH HOH . H 6 HOH A 37 637 484 HOH HOH . I 6 HOH B 1 601 497 HOH HOH . I 6 HOH B 2 602 451 HOH HOH . I 6 HOH B 3 603 489 HOH HOH . I 6 HOH B 4 604 458 HOH HOH . I 6 HOH B 5 605 490 HOH HOH . I 6 HOH B 6 606 459 HOH HOH . I 6 HOH B 7 607 494 HOH HOH . I 6 HOH B 8 608 495 HOH HOH . I 6 HOH B 9 609 449 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N F4U . . . C 3 -28.433 -17.995 -8.067 1 27.03 ? N F4U 501 A 1 HETATM 2 C CA F4U . . . C 3 -28.689 -18.675 -6.887 1 27.2 ? CA F4U 501 A 1 HETATM 3 C C F4U . . . C 3 -28.871 -19.998 -7.048 1 25.25 ? C F4U 501 A 1 HETATM 4 O O F4U . . . C 3 -28.369 -20.615 -7.992 1 24.84 ? O F4U 501 A 1 HETATM 5 C CB F4U . . . C 3 -29.719 -18.045 -6.111 1 24.92 ? CB F4U 501 A 1 HETATM 6 C CG F4U . . . C 3 -30.062 -18.816 -4.819 1 25.31 ? CG F4U 501 A 1 HETATM 7 C CD F4U . . . C 3 -30.282 -20.169 -5.101 1 26.99 ? CD F4U 501 A 1 HETATM 8 O OE1 F4U . . . C 3 -30.971 -20.887 -4.379 1 25.32 ? OE1 F4U 501 A 1 HETATM 9 N NE2 F4U . . . C 3 -29.674 -20.747 -6.205 1 27.3 ? NE2 F4U 501 A 1 HETATM 10 C CAA F4U . . . C 3 -29.275 -17.039 -11.347 1 30.35 ? CAA F4U 501 A 1 HETATM 11 C CAB F4U . . . C 3 -28.553 -16.258 -12.242 1 32.6 ? CAB F4U 501 A 1 HETATM 12 C CAC F4U . . . C 3 -27.323 -15.76 -11.838 1 30.9 ? CAC F4U 501 A 1 HETATM 13 C CAD F4U . . . C 3 -26.869 -16.071 -10.562 1 28.52 ? CAD F4U 501 A 1 HETATM 14 C CAE F4U . . . C 3 -27.605 -16.821 -9.737 1 28.08 ? CAE F4U 501 A 1 HETATM 15 C CAF F4U . . . C 3 -28.79 -17.297 -10.128 1 28.57 ? CAF F4U 501 A 1 HETATM 16 C CAG F4U . . . C 3 -27.402 -17.254 -8.483 1 26.67 ? CAG F4U 501 A 1 HETATM 17 C CAI F4U . . . C 3 -29.275 -18.013 -9.104 1 28.62 ? CAI F4U 501 A 1 HETATM 18 O OAR F4U . . . C 3 -30.359 -18.605 -9.117 1 28.96 ? OAR F4U 501 A 1 HETATM 19 O OAS F4U . . . C 3 -26.406 -16.993 -7.802 1 25.63 ? OAS F4U 501 A 1 HETATM 20 O OAT F4U . . . C 3 -29.038 -15.991 -13.492 1 37.69 ? OAT F4U 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #