data_7BR3 # _model_server_result.job_id OJhs47dyKvKLpXi78iqsCg _model_server_result.datetime_utc '2024-11-30 14:18:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7br3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1211}' # _entry.id 7BR3 # _exptl.entry_id 7BR3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 631.59 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[[(1R)-2-[5-(2-fluoranyl-3-methoxy-phenyl)-3-[[2-fluoranyl-6-(trifluoromethyl)phenyl]methyl]-4-methyl-2,6-bis(oxidanylidene)pyrimidin-1-yl]-1-phenyl-ethyl]amino]butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7BR3 _cell.length_a 73.964 _cell.length_b 73.964 _cell.length_c 231.156 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BR3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 122 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 114 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 204 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 196 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.856 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C32 H30 F5 N3 O5' _chem_comp.formula_weight 631.59 _chem_comp.id F5O _chem_comp.mon_nstd_flag . _chem_comp.name '4-[[(1R)-2-[5-(2-fluoranyl-3-methoxy-phenyl)-3-[[2-fluoranyl-6-(trifluoromethyl)phenyl]methyl]-4-methyl-2,6-bis(oxidanylidene)pyrimidin-1-yl]-1-phenyl-ethyl]amino]butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAL CAM F5O doub 131 n y CAL CAK F5O sing 132 n y OAF CAA F5O doub 133 n n CAM CAN F5O sing 134 n y OAE CAA F5O sing 135 n n CAA CAB F5O sing 136 n n CAK CAJ F5O doub 137 n y CAC CAB F5O sing 138 n n CAC CAD F5O sing 139 n n CAN CAO F5O doub 140 n y NAG CAD F5O sing 141 n n NAG CAH F5O sing 142 n n CAJ CAO F5O sing 143 n y CAJ CAH F5O sing 144 n n CAH CAI F5O sing 145 n n CBC CBB F5O doub 146 n y CBC CBD F5O sing 147 n y CBB CBA F5O sing 148 n y CBD CBE F5O doub 149 n y CAI NAU F5O sing 150 n n CBA FBJ F5O sing 151 n n CBA CAZ F5O doub 152 n y OAW CAP F5O doub 153 n n CBE CAZ F5O sing 154 n y CBE CBF F5O sing 155 n n NAU CAP F5O sing 156 n n NAU CAT F5O sing 157 n n CAZ CAY F5O sing 158 n n CAP NAQ F5O sing 159 n n OAV CAT F5O doub 160 n n FBS CBL F5O sing 161 n n CAT CAS F5O sing 162 n n FBH CBF F5O sing 163 n n FBG CBF F5O sing 164 n n CBF FBI F5O sing 165 n n NAQ CAY F5O sing 166 n n NAQ CAR F5O sing 167 n n OBQ CBR F5O sing 168 n n OBQ CBM F5O sing 169 n n CAS CAR F5O doub 170 n n CAS CBK F5O sing 171 n n CBL CBM F5O doub 172 n y CBL CBK F5O sing 173 n y CAR CAX F5O sing 174 n n CBM CBN F5O sing 175 n y CBK CBP F5O doub 176 n y CBN CBO F5O doub 177 n y CBP CBO F5O sing 178 n y CAB H1 F5O sing 179 n n CAB H2 F5O sing 180 n n CAC H3 F5O sing 181 n n CAC H4 F5O sing 182 n n CAD H5 F5O sing 183 n n CAD H6 F5O sing 184 n n CAH H7 F5O sing 185 n n CAI H8 F5O sing 186 n n CAI H9 F5O sing 187 n n CAK H10 F5O sing 188 n n CAL H11 F5O sing 189 n n CAM H12 F5O sing 190 n n CAN H13 F5O sing 191 n n CAO H14 F5O sing 192 n n CAX H15 F5O sing 193 n n CAX H16 F5O sing 194 n n CAX H17 F5O sing 195 n n CAY H18 F5O sing 196 n n CAY H19 F5O sing 197 n n CBB H20 F5O sing 198 n n CBC H21 F5O sing 199 n n CBD H22 F5O sing 200 n n CBN H23 F5O sing 201 n n CBO H24 F5O sing 202 n n CBP H25 F5O sing 203 n n CBR H26 F5O sing 204 n n CBR H27 F5O sing 205 n n CBR H28 F5O sing 206 n n NAG H29 F5O sing 207 n n OAE H31 F5O sing 208 n n # _atom_sites.entry_id 7BR3 _atom_sites.fract_transf_matrix[1][1] 0.01352 _atom_sites.fract_transf_matrix[1][2] 0.007806 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004326 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1QW A 1 1201 1201 1QW 1QW . C 3 OLC A 1 1202 1202 OLC OLA . D 3 OLC A 1 1203 1203 OLC OLA . E 4 PEG A 1 1204 1204 PEG PEG . F 4 PEG A 1 1205 1205 PEG PEG . G 4 PEG A 1 1206 1206 PEG PEG . H 4 PEG A 1 1207 1207 PEG PEG . I 4 PEG A 1 1208 1208 PEG PEG . J 4 PEG A 1 1209 1209 PEG PEG . K 5 FMT A 1 1210 1210 FMT FMT . L 6 F5O A 1 1211 1211 F5O F5O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA F5O . . . L 6 -23.823 23.093 -12.929 1 42.46 ? CAA F5O 1211 A 1 HETATM 2 C CAB F5O . . . L 6 -22.53 22.57 -12.274 1 42.32 ? CAB F5O 1211 A 1 HETATM 3 C CAC F5O . . . L 6 -22.12 21.145 -12.722 1 42.55 ? CAC F5O 1211 A 1 HETATM 4 C CAD F5O . . . L 6 -22.998 20.032 -12.081 1 41.86 ? CAD F5O 1211 A 1 HETATM 5 C CAH F5O . . . L 6 -25.226 19.569 -11.543 1 40.64 ? CAH F5O 1211 A 1 HETATM 6 C CAI F5O . . . L 6 -25.414 20.453 -10.26 1 40.03 ? CAI F5O 1211 A 1 HETATM 7 C CAJ F5O . . . L 6 -26.58 19.239 -12.144 1 40.54 ? CAJ F5O 1211 A 1 HETATM 8 C CAK F5O . . . L 6 -27.331 20.224 -12.781 1 41.01 ? CAK F5O 1211 A 1 HETATM 9 C CAL F5O . . . L 6 -28.577 19.895 -13.326 1 41.2 ? CAL F5O 1211 A 1 HETATM 10 C CAM F5O . . . L 6 -29.072 18.596 -13.24 1 40.66 ? CAM F5O 1211 A 1 HETATM 11 C CAN F5O . . . L 6 -28.317 17.621 -12.604 1 40.19 ? CAN F5O 1211 A 1 HETATM 12 C CAO F5O . . . L 6 -27.076 17.943 -12.06 1 40.2 ? CAO F5O 1211 A 1 HETATM 13 C CAP F5O . . . L 6 -27.589 20.209 -9.1 1 38.8 ? CAP F5O 1211 A 1 HETATM 14 C CAR F5O . . . L 6 -28.126 18.402 -7.774 1 37.74 ? CAR F5O 1211 A 1 HETATM 15 C CAS F5O . . . L 6 -26.868 17.847 -8.013 1 38.2 ? CAS F5O 1211 A 1 HETATM 16 C CAT F5O . . . L 6 -26.001 18.545 -8.835 1 38.93 ? CAT F5O 1211 A 1 HETATM 17 C CAX F5O . . . L 6 -29.132 17.648 -6.867 1 37.1 ? CAX F5O 1211 A 1 HETATM 18 C CAY F5O . . . L 6 -29.789 20.161 -8.029 1 38.24 ? CAY F5O 1211 A 1 HETATM 19 C CAZ F5O . . . L 6 -30.665 20.487 -9.234 1 39.26 ? CAZ F5O 1211 A 1 HETATM 20 C CBA F5O . . . L 6 -30.904 19.484 -10.158 1 39.45 ? CBA F5O 1211 A 1 HETATM 21 C CBB F5O . . . L 6 -31.697 19.715 -11.272 1 40.43 ? CBB F5O 1211 A 1 HETATM 22 C CBC F5O . . . L 6 -32.264 20.975 -11.458 1 41.47 ? CBC F5O 1211 A 1 HETATM 23 C CBD F5O . . . L 6 -32.024 21.988 -10.519 1 41.5 ? CBD F5O 1211 A 1 HETATM 24 C CBE F5O . . . L 6 -31.232 21.751 -9.406 1 40.29 ? CBE F5O 1211 A 1 HETATM 25 C CBF F5O . . . L 6 -31.012 22.948 -8.395 1 40.36 ? CBF F5O 1211 A 1 HETATM 26 C CBK F5O . . . L 6 -26.426 16.497 -7.42 1 38.33 ? CBK F5O 1211 A 1 HETATM 27 C CBL F5O . . . L 6 -26.979 15.31 -7.961 1 38.47 ? CBL F5O 1211 A 1 HETATM 28 C CBM F5O . . . L 6 -26.611 14.051 -7.463 1 38.83 ? CBM F5O 1211 A 1 HETATM 29 C CBN F5O . . . L 6 -25.694 13.964 -6.429 1 39.2 ? CBN F5O 1211 A 1 HETATM 30 C CBO F5O . . . L 6 -25.13 15.158 -5.887 1 39.09 ? CBO F5O 1211 A 1 HETATM 31 C CBP F5O . . . L 6 -25.501 16.417 -6.394 1 38.58 ? CBP F5O 1211 A 1 HETATM 32 C CBR F5O . . . L 6 -26.731 11.621 -7.559 1 39.38 ? CBR F5O 1211 A 1 HETATM 33 F FBG F5O . . . L 6 -29.744 23.371 -8.416 1 40.3 ? FBG F5O 1211 A 1 HETATM 34 F FBH F5O . . . L 6 -31.836 23.969 -8.813 1 41.79 ? FBH F5O 1211 A 1 HETATM 35 F FBI F5O . . . L 6 -31.344 22.609 -7.115 1 39.42 ? FBI F5O 1211 A 1 HETATM 36 F FBJ F5O . . . L 6 -30.344 18.273 -9.951 1 38.81 ? FBJ F5O 1211 A 1 HETATM 37 F FBS F5O . . . L 6 -27.9 15.404 -8.994 1 38.44 ? FBS F5O 1211 A 1 HETATM 38 N NAG F5O . . . L 6 -24.384 20.211 -12.489 1 41.45 ? NAG F5O 1211 A 1 HETATM 39 N NAQ F5O . . . L 6 -28.455 19.577 -8.332 1 38.15 ? NAQ F5O 1211 A 1 HETATM 40 N NAU F5O . . . L 6 -26.369 19.714 -9.36 1 39.18 ? NAU F5O 1211 A 1 HETATM 41 O OAE F5O . . . L 6 -23.966 24.32 -13.104 1 42.92 ? OAE F5O 1211 A 1 HETATM 42 O OAF F5O . . . L 6 -24.742 22.302 -13.281 1 42.27 ? OAF F5O 1211 A 1 HETATM 43 O OAV F5O . . . L 6 -24.717 17.979 -9.08 1 39.67 ? OAV F5O 1211 A 1 HETATM 44 O OAW F5O . . . L 6 -27.906 21.26 -9.583 1 39.32 ? OAW F5O 1211 A 1 HETATM 45 O OBQ F5O . . . L 6 -27.21 12.875 -8.053 1 38.92 ? OBQ F5O 1211 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 532 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 45 #