data_7BRE # _model_server_result.job_id 3kZewhtc5ro3HaGq_JusIw _model_server_result.datetime_utc '2025-09-01 01:09:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bre # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2802}' # _entry.id 7BRE # _exptl.entry_id 7BRE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.23 _cell.angle_gamma 90 _cell.entry_id 7BRE _cell.length_a 79.075 _cell.length_b 66.195 _cell.length_c 83.734 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BRE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 105 B CYS 2655 1_555 G ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 B SG CYS 153 B CYS 2703 1_555 G ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 B SG CYS 155 B CYS 2705 1_555 G ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc4 B SG CYS 160 B CYS 2710 1_555 G ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc5 C SG CYS 105 E CYS 2655 1_555 I ZN ZN . E ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc6 C SG CYS 153 E CYS 2703 1_555 I ZN ZN . E ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc7 C SG CYS 155 E CYS 2705 1_555 I ZN ZN . E ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc8 C SG CYS 160 E CYS 2710 1_555 I ZN ZN . E ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 275 n n N HN1 SAH sing 276 n n N HN2 SAH sing 277 n n CA CB SAH sing 278 n n CA C SAH sing 279 n n CA HA SAH sing 280 n n CB CG SAH sing 281 n n CB HB1 SAH sing 282 n n CB HB2 SAH sing 283 n n CG SD SAH sing 284 n n CG HG1 SAH sing 285 n n CG HG2 SAH sing 286 n n SD C5' SAH sing 287 n n C O SAH doub 288 n n C OXT SAH sing 289 n n OXT HXT SAH sing 290 n n C5' C4' SAH sing 291 n n C5' "H5'1" SAH sing 292 n n C5' "H5'2" SAH sing 293 n n C4' O4' SAH sing 294 n n C4' C3' SAH sing 295 n n C4' H4' SAH sing 296 n n O4' C1' SAH sing 297 n n C3' O3' SAH sing 298 n n C3' C2' SAH sing 299 n n C3' H3' SAH sing 300 n n O3' HO3' SAH sing 301 n n C2' O2' SAH sing 302 n n C2' C1' SAH sing 303 n n C2' H2' SAH sing 304 n n O2' HO2' SAH sing 305 n n C1' N9 SAH sing 306 n n C1' H1' SAH sing 307 n n N9 C8 SAH sing 308 n y N9 C4 SAH sing 309 n y C8 N7 SAH doub 310 n y C8 H8 SAH sing 311 n n N7 C5 SAH sing 312 n y C5 C6 SAH sing 313 n y C5 C4 SAH doub 314 n y C6 N6 SAH sing 315 n n C6 N1 SAH doub 316 n y N6 HN61 SAH sing 317 n n N6 HN62 SAH sing 318 n n N1 C2 SAH sing 319 n y C2 N3 SAH doub 320 n y C2 H2 SAH sing 321 n n N3 C4 SAH sing 322 n y # _atom_sites.entry_id 7BRE _atom_sites.fract_transf_matrix[1][1] 0.012646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000713 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ZN B 1 2801 4970 ZN ZN . H 5 SAH B 1 2802 4971 SAH SAH . I 4 ZN E 1 2801 4970 ZN ZN . J 5 SAH E 1 2802 4971 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . H 5 33.432 23.781 133.631 1 49.66 ? N SAH 2802 B 1 HETATM 2 C CA SAH . . . H 5 33.314 23.754 132.178 1 49.05 ? CA SAH 2802 B 1 HETATM 3 C CB SAH . . . H 5 32.004 23.091 131.774 1 46.07 ? CB SAH 2802 B 1 HETATM 4 C CG SAH . . . H 5 32.158 21.679 131.225 1 48.19 ? CG SAH 2802 B 1 HETATM 5 S SD SAH . . . H 5 32.86 21.682 129.557 1 44.02 ? SD SAH 2802 B 1 HETATM 6 C C SAH . . . H 5 33.407 25.157 131.589 1 51.4 ? C SAH 2802 B 1 HETATM 7 O O SAH . . . H 5 33.371 25.343 130.372 1 52.49 ? O SAH 2802 B 1 HETATM 8 O OXT SAH . . . H 5 33.525 26.14 132.323 1 50.78 ? OXT SAH 2802 B 1 HETATM 9 C C5' SAH . . . H 5 33.88 20.244 129.966 1 37.61 ? C5' SAH 2802 B 1 HETATM 10 C C4' SAH . . . H 5 35.299 20.623 130.374 1 37.38 ? C4' SAH 2802 B 1 HETATM 11 O O4' SAH . . . H 5 35.328 20.989 131.742 1 39.44 ? O4' SAH 2802 B 1 HETATM 12 C C3' SAH . . . H 5 36.269 19.468 130.18 1 41.35 ? C3' SAH 2802 B 1 HETATM 13 O O3' SAH . . . H 5 37.107 19.72 129.078 1 50.24 ? O3' SAH 2802 B 1 HETATM 14 C C2' SAH . . . H 5 37.091 19.413 131.446 1 46.22 ? C2' SAH 2802 B 1 HETATM 15 O O2' SAH . . . H 5 38.393 19.894 131.205 1 57.39 ? O2' SAH 2802 B 1 HETATM 16 C C1' SAH . . . H 5 36.393 20.347 132.413 1 42.21 ? C1' SAH 2802 B 1 HETATM 17 N N9 SAH . . . H 5 35.865 19.534 133.517 1 40.78 ? N9 SAH 2802 B 1 HETATM 18 C C8 SAH . . . H 5 34.61 18.991 133.603 1 40.97 ? C8 SAH 2802 B 1 HETATM 19 N N7 SAH . . . H 5 34.523 18.305 134.763 1 38.86 ? N7 SAH 2802 B 1 HETATM 20 C C5 SAH . . . H 5 35.703 18.392 135.407 1 43.58 ? C5 SAH 2802 B 1 HETATM 21 C C6 SAH . . . H 5 36.145 17.875 136.615 1 46.32 ? C6 SAH 2802 B 1 HETATM 22 N N6 SAH . . . H 5 35.328 17.138 137.361 1 43 ? N6 SAH 2802 B 1 HETATM 23 N N1 SAH . . . H 5 37.434 18.135 137.032 1 45 ? N1 SAH 2802 B 1 HETATM 24 C C2 SAH . . . H 5 38.276 18.9 136.25 1 50.24 ? C2 SAH 2802 B 1 HETATM 25 N N3 SAH . . . H 5 37.828 19.41 135.049 1 48.08 ? N3 SAH 2802 B 1 HETATM 26 C C4 SAH . . . H 5 36.56 19.162 134.636 1 43.62 ? C4 SAH 2802 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 387 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #