data_7BRE # _model_server_result.job_id 0g7zzC6t_rtDSsSDglLaaQ _model_server_result.datetime_utc '2025-09-01 01:08:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bre # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2802}' # _entry.id 7BRE # _exptl.entry_id 7BRE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.23 _cell.angle_gamma 90 _cell.entry_id 7BRE _cell.length_a 79.075 _cell.length_b 66.195 _cell.length_c 83.734 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BRE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 105 B CYS 2655 1_555 G ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 B SG CYS 153 B CYS 2703 1_555 G ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 B SG CYS 155 B CYS 2705 1_555 G ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc4 B SG CYS 160 B CYS 2710 1_555 G ZN ZN . B ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc5 C SG CYS 105 E CYS 2655 1_555 I ZN ZN . E ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc6 C SG CYS 153 E CYS 2703 1_555 I ZN ZN . E ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc7 C SG CYS 155 E CYS 2705 1_555 I ZN ZN . E ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc8 C SG CYS 160 E CYS 2710 1_555 I ZN ZN . E ZN 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 275 n n N HN1 SAH sing 276 n n N HN2 SAH sing 277 n n CA CB SAH sing 278 n n CA C SAH sing 279 n n CA HA SAH sing 280 n n CB CG SAH sing 281 n n CB HB1 SAH sing 282 n n CB HB2 SAH sing 283 n n CG SD SAH sing 284 n n CG HG1 SAH sing 285 n n CG HG2 SAH sing 286 n n SD C5' SAH sing 287 n n C O SAH doub 288 n n C OXT SAH sing 289 n n OXT HXT SAH sing 290 n n C5' C4' SAH sing 291 n n C5' "H5'1" SAH sing 292 n n C5' "H5'2" SAH sing 293 n n C4' O4' SAH sing 294 n n C4' C3' SAH sing 295 n n C4' H4' SAH sing 296 n n O4' C1' SAH sing 297 n n C3' O3' SAH sing 298 n n C3' C2' SAH sing 299 n n C3' H3' SAH sing 300 n n O3' HO3' SAH sing 301 n n C2' O2' SAH sing 302 n n C2' C1' SAH sing 303 n n C2' H2' SAH sing 304 n n O2' HO2' SAH sing 305 n n C1' N9 SAH sing 306 n n C1' H1' SAH sing 307 n n N9 C8 SAH sing 308 n y N9 C4 SAH sing 309 n y C8 N7 SAH doub 310 n y C8 H8 SAH sing 311 n n N7 C5 SAH sing 312 n y C5 C6 SAH sing 313 n y C5 C4 SAH doub 314 n y C6 N6 SAH sing 315 n n C6 N1 SAH doub 316 n y N6 HN61 SAH sing 317 n n N6 HN62 SAH sing 318 n n N1 C2 SAH sing 319 n y C2 N3 SAH doub 320 n y C2 H2 SAH sing 321 n n N3 C4 SAH sing 322 n y # _atom_sites.entry_id 7BRE _atom_sites.fract_transf_matrix[1][1] 0.012646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000713 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ZN B 1 2801 4970 ZN ZN . H 5 SAH B 1 2802 4971 SAH SAH . I 4 ZN E 1 2801 4970 ZN ZN . J 5 SAH E 1 2802 4971 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . J 5 -8.519 -17.269 132.841 1 49.31 ? N SAH 2802 E 1 HETATM 2 C CA SAH . . . J 5 -8.46 -17.537 131.409 1 54.37 ? CA SAH 2802 E 1 HETATM 3 C CB SAH . . . J 5 -7.125 -17.067 130.845 1 56.01 ? CB SAH 2802 E 1 HETATM 4 C CG SAH . . . J 5 -7.127 -15.612 130.398 1 53.12 ? CG SAH 2802 E 1 HETATM 5 S SD SAH . . . J 5 -7.994 -15.413 128.821 1 49.35 ? SD SAH 2802 E 1 HETATM 6 C C SAH . . . J 5 -8.681 -19.016 131.107 1 63.13 ? C SAH 2802 E 1 HETATM 7 O O SAH . . . J 5 -8.571 -19.453 129.961 1 67.5 ? O SAH 2802 E 1 HETATM 8 O OXT SAH . . . J 5 -8.978 -19.809 132.001 1 67.22 ? OXT SAH 2802 E 1 HETATM 9 C C5' SAH . . . J 5 -8.813 -13.913 129.412 1 52.69 ? C5' SAH 2802 E 1 HETATM 10 C C4' SAH . . . J 5 -10.235 -14.191 129.871 1 53.32 ? C4' SAH 2802 E 1 HETATM 11 O O4' SAH . . . J 5 -10.236 -14.59 131.232 1 53.96 ? O4' SAH 2802 E 1 HETATM 12 C C3' SAH . . . J 5 -11.109 -12.955 129.74 1 55.04 ? C3' SAH 2802 E 1 HETATM 13 O O3' SAH . . . J 5 -11.962 -13.075 128.626 1 60.13 ? O3' SAH 2802 E 1 HETATM 14 C C2' SAH . . . J 5 -11.915 -12.916 131.016 1 56.56 ? C2' SAH 2802 E 1 HETATM 15 O O2' SAH . . . J 5 -13.237 -13.314 130.734 1 59.57 ? O2' SAH 2802 E 1 HETATM 16 C C1' SAH . . . J 5 -11.255 -13.919 131.948 1 50.1 ? C1' SAH 2802 E 1 HETATM 17 N N9 SAH . . . J 5 -10.668 -13.175 133.077 1 42.92 ? N9 SAH 2802 E 1 HETATM 18 C C8 SAH . . . J 5 -9.372 -12.743 133.189 1 49.17 ? C8 SAH 2802 E 1 HETATM 19 N N7 SAH . . . J 5 -9.234 -12.084 134.362 1 52.33 ? N7 SAH 2802 E 1 HETATM 20 C C5 SAH . . . J 5 -10.425 -12.078 134.994 1 48.7 ? C5 SAH 2802 E 1 HETATM 21 C C6 SAH . . . J 5 -10.834 -11.545 136.208 1 45.85 ? C6 SAH 2802 E 1 HETATM 22 N N6 SAH . . . J 5 -9.967 -10.894 136.976 1 46.3 ? N6 SAH 2802 E 1 HETATM 23 N N1 SAH . . . J 5 -12.142 -11.694 136.614 1 43.87 ? N1 SAH 2802 E 1 HETATM 24 C C2 SAH . . . J 5 -13.032 -12.371 135.807 1 46.98 ? C2 SAH 2802 E 1 HETATM 25 N N3 SAH . . . J 5 -12.622 -12.9 134.6 1 44.8 ? N3 SAH 2802 E 1 HETATM 26 C C4 SAH . . . J 5 -11.336 -12.759 134.2 1 44.11 ? C4 SAH 2802 E 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 90 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 600 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #