data_7BRK # _model_server_result.job_id 5kxKlULVXoLPZO3knBmMVg _model_server_result.datetime_utc '2024-11-04 22:53:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7brk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":508}' # _entry.id 7BRK # _exptl.entry_id 7BRK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7BRK _cell.length_a 99.419 _cell.length_b 99.419 _cell.length_c 259.666 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BRK _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 4 3 2 MAN NAG C1 O1 . O4 HO4 . sing 5 ? 4 4 3 MAN MAN C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n D NAG 1 C 1 NAG A 451 NAG 3 n D NAG 2 C 2 NAG A 452 NAG 3 n D MAN 3 C 3 MAN A 453 MAN 4 n E NAG 1 D 1 NAG A 461 NAG 4 n E NAG 2 D 2 NAG A 462 NAG 4 n E MAN 3 D 3 MAN A 463 MAN 4 n E MAN 4 D 4 MAN A 464 MAN 3 n F NAG 1 E 1 NAG B 451 NAG 3 n F NAG 2 E 2 NAG B 452 NAG 3 n F MAN 3 E 3 MAN B 453 MAN 4 n G NAG 1 F 1 NAG B 461 NAG 4 n G NAG 2 F 2 NAG B 462 NAG 4 n G MAN 3 F 3 MAN B 463 MAN 4 n G MAN 4 F 4 MAN B 464 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 60 A CYS 60 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 164 A CYS 164 1_555 A SG CYS 213 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 B SG CYS 60 B CYS 60 1_555 B SG CYS 86 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 B SG CYS 164 B CYS 164 1_555 B SG CYS 213 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 C SG CYS 3 L CYS 7 1_555 C SG CYS 19 L CYS 23 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 3 L CYS 7 1_555 C SG CYS 19 L CYS 23 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 13 A ASN 13 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 395 A ASN 395 1_555 E C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale3 B ND2 ASN 13 B ASN 13 1_555 F C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 B ND2 ASN 395 B ASN 395 1_555 G C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale6 D O4 NAG . C NAG 2 1_555 D C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale7 E O4 NAG . D NAG 1 1_555 E C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale8 E O4 NAG . D NAG 2 1_555 E C1 MAN . D MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale9 E O3 MAN . D MAN 3 1_555 E C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale10 F O4 NAG . E NAG 1 1_555 F C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale11 F O4 NAG . E NAG 2 1_555 F C1 MAN . E MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale12 G O4 NAG . F NAG 1 1_555 G C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale13 G O4 NAG . F NAG 2 1_555 G C1 MAN . F MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale14 G O3 MAN . F MAN 3 1_555 G C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7BRK _atom_sites.fract_transf_matrix[1][1] 0.010058 _atom_sites.fract_transf_matrix[1][2] 0.005807 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003851 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 CL A 1 508 600 CL CL . I 5 CL B 1 508 600 CL CL . J 6 HOH A 1 601 2015 HOH HOH . J 6 HOH A 2 602 1115 HOH HOH . J 6 HOH A 3 603 1010 HOH HOH . J 6 HOH A 4 604 1150 HOH HOH . J 6 HOH A 5 605 1138 HOH HOH . J 6 HOH A 6 606 1127 HOH HOH . J 6 HOH A 7 607 2003 HOH HOH . J 6 HOH A 8 608 1009 HOH HOH . J 6 HOH A 9 609 1108 HOH HOH . J 6 HOH A 10 610 1016 HOH HOH . J 6 HOH A 11 611 1002 HOH HOH . J 6 HOH A 12 612 1001 HOH HOH . J 6 HOH A 13 613 1107 HOH HOH . J 6 HOH A 14 614 1011 HOH HOH . J 6 HOH A 15 615 1118 HOH HOH . J 6 HOH A 16 616 1112 HOH HOH . J 6 HOH A 17 617 1008 HOH HOH . J 6 HOH A 18 618 1132 HOH HOH . J 6 HOH A 19 619 1005 HOH HOH . J 6 HOH A 20 620 1105 HOH HOH . J 6 HOH A 21 621 1119 HOH HOH . J 6 HOH A 22 622 1126 HOH HOH . J 6 HOH A 23 623 1106 HOH HOH . J 6 HOH A 24 624 1015 HOH HOH . J 6 HOH A 25 625 1116 HOH HOH . J 6 HOH A 26 626 1114 HOH HOH . J 6 HOH A 27 627 2011 HOH HOH . J 6 HOH A 28 628 1117 HOH HOH . J 6 HOH A 29 629 1123 HOH HOH . J 6 HOH A 30 630 1006 HOH HOH . J 6 HOH A 31 631 1104 HOH HOH . J 6 HOH A 32 632 1122 HOH HOH . J 6 HOH A 33 633 1109 HOH HOH . J 6 HOH A 34 634 1146 HOH HOH . J 6 HOH A 35 635 1125 HOH HOH . J 6 HOH A 36 636 1012 HOH HOH . J 6 HOH A 37 637 1131 HOH HOH . J 6 HOH A 38 638 1134 HOH HOH . J 6 HOH A 39 639 1121 HOH HOH . J 6 HOH A 40 640 1144 HOH HOH . J 6 HOH A 41 641 1111 HOH HOH . J 6 HOH A 42 642 1101 HOH HOH . J 6 HOH A 43 643 1110 HOH HOH . J 6 HOH A 44 644 1140 HOH HOH . J 6 HOH A 45 645 1145 HOH HOH . J 6 HOH A 46 646 1017 HOH HOH . J 6 HOH A 47 647 1052 HOH HOH . J 6 HOH A 48 648 1143 HOH HOH . K 6 HOH B 1 601 2015 HOH HOH . K 6 HOH B 2 602 1115 HOH HOH . K 6 HOH B 3 603 1010 HOH HOH . K 6 HOH B 4 604 1127 HOH HOH . K 6 HOH B 5 605 2003 HOH HOH . K 6 HOH B 6 606 1011 HOH HOH . K 6 HOH B 7 607 1150 HOH HOH . K 6 HOH B 8 608 1138 HOH HOH . K 6 HOH B 9 609 1002 HOH HOH . K 6 HOH B 10 610 1105 HOH HOH . K 6 HOH B 11 611 1016 HOH HOH . K 6 HOH B 12 612 1112 HOH HOH . K 6 HOH B 13 613 1118 HOH HOH . K 6 HOH B 14 614 1009 HOH HOH . K 6 HOH B 15 615 1107 HOH HOH . K 6 HOH B 16 616 1108 HOH HOH . K 6 HOH B 17 617 1132 HOH HOH . K 6 HOH B 18 618 1001 HOH HOH . K 6 HOH B 19 619 1008 HOH HOH . K 6 HOH B 20 620 1116 HOH HOH . K 6 HOH B 21 621 1005 HOH HOH . K 6 HOH B 22 622 1119 HOH HOH . K 6 HOH B 23 623 1106 HOH HOH . K 6 HOH B 24 624 1015 HOH HOH . K 6 HOH B 25 625 1006 HOH HOH . K 6 HOH B 26 626 1114 HOH HOH . K 6 HOH B 27 627 2011 HOH HOH . K 6 HOH B 28 628 1122 HOH HOH . K 6 HOH B 29 629 1104 HOH HOH . K 6 HOH B 30 630 1126 HOH HOH . K 6 HOH B 31 631 1012 HOH HOH . K 6 HOH B 32 632 1125 HOH HOH . K 6 HOH B 33 633 1123 HOH HOH . K 6 HOH B 34 634 1109 HOH HOH . K 6 HOH B 35 635 1134 HOH HOH . K 6 HOH B 36 636 1101 HOH HOH . K 6 HOH B 37 637 1146 HOH HOH . K 6 HOH B 38 638 1117 HOH HOH . K 6 HOH B 39 639 1144 HOH HOH . K 6 HOH B 40 640 1121 HOH HOH . K 6 HOH B 41 641 1131 HOH HOH . K 6 HOH B 42 642 1111 HOH HOH . K 6 HOH B 43 643 1145 HOH HOH . K 6 HOH B 44 644 1110 HOH HOH . K 6 HOH B 45 645 1140 HOH HOH . K 6 HOH B 46 646 1017 HOH HOH . K 6 HOH B 47 647 1052 HOH HOH . K 6 HOH B 48 648 1143 HOH HOH . L 6 HOH L 1 101 2012 HOH HOH . L 6 HOH L 2 102 2012 HOH HOH . L 6 HOH L 3 103 1053 HOH HOH . L 6 HOH L 4 104 1053 HOH HOH . L 6 HOH L 5 105 2014 HOH HOH . L 6 HOH L 6 106 2014 HOH HOH . L 6 HOH L 7 107 2008 HOH HOH . L 6 HOH L 8 108 2006 HOH HOH . L 6 HOH L 9 109 2008 HOH HOH . L 6 HOH L 10 110 2010 HOH HOH . L 6 HOH L 11 111 2006 HOH HOH . L 6 HOH L 12 112 2010 HOH HOH . L 6 HOH L 13 113 2017 HOH HOH . L 6 HOH L 14 114 2017 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x 36.058 _atom_site.Cartn_y 6.548 _atom_site.Cartn_z -12.07 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 84.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 508 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #