data_7BRV # _model_server_result.job_id FTpUGaIeq0cA6CYzKbxWPw _model_server_result.datetime_utc '2024-11-17 11:46:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7brv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 7BRV # _exptl.entry_id 7BRV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BRV _cell.length_a 54.98 _cell.length_b 58.77 _cell.length_c 68.03 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BRV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 30 1_555 A SG CYS 137 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 25 A CYS 48 1_555 A SG CYS 41 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 109 A CYS 132 1_555 A SG CYS 210 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 116 A CYS 139 1_555 A SG CYS 183 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 148 A CYS 171 1_555 A SG CYS 162 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 A SG CYS 173 A CYS 196 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc1 A OE1 GLU 52 A GLU 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc2 A O ASN 54 A ASN 77 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc3 A O VAL 57 A VAL 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc4 A OE2 GLU 62 A GLU 85 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc5 B CA CA . A CA 301 1_555 G O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc6 B CA CA . A CA 301 1_555 G O HOH . A HOH 415 4_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7BRV _atom_sites.fract_transf_matrix[1][1] 0.018188 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 SO4 A 1 302 2 SO4 SO4 . D 3 SO4 A 1 303 3 SO4 SO4 . E 4 DMS A 1 304 4 DMS DMS . F 5 F5R A 1 305 5 F5R LIG . G 6 HOH A 1 401 23 HOH HOH . G 6 HOH A 2 402 66 HOH HOH . G 6 HOH A 3 403 96 HOH HOH . G 6 HOH A 4 404 1 HOH HOH . G 6 HOH A 5 405 110 HOH HOH . G 6 HOH A 6 406 34 HOH HOH . G 6 HOH A 7 407 17 HOH HOH . G 6 HOH A 8 408 108 HOH HOH . G 6 HOH A 9 409 160 HOH HOH . G 6 HOH A 10 410 12 HOH HOH . G 6 HOH A 11 411 109 HOH HOH . G 6 HOH A 12 412 51 HOH HOH . G 6 HOH A 13 413 133 HOH HOH . G 6 HOH A 14 414 38 HOH HOH . G 6 HOH A 15 415 2 HOH HOH . G 6 HOH A 16 416 27 HOH HOH . G 6 HOH A 17 417 102 HOH HOH . G 6 HOH A 18 418 145 HOH HOH . G 6 HOH A 19 419 9 HOH HOH . G 6 HOH A 20 420 156 HOH HOH . G 6 HOH A 21 421 50 HOH HOH . G 6 HOH A 22 422 25 HOH HOH . G 6 HOH A 23 423 157 HOH HOH . G 6 HOH A 24 424 42 HOH HOH . G 6 HOH A 25 425 151 HOH HOH . G 6 HOH A 26 426 16 HOH HOH . G 6 HOH A 27 427 75 HOH HOH . G 6 HOH A 28 428 131 HOH HOH . G 6 HOH A 29 429 55 HOH HOH . G 6 HOH A 30 430 45 HOH HOH . G 6 HOH A 31 431 33 HOH HOH . G 6 HOH A 32 432 65 HOH HOH . G 6 HOH A 33 433 99 HOH HOH . G 6 HOH A 34 434 122 HOH HOH . G 6 HOH A 35 435 117 HOH HOH . G 6 HOH A 36 436 39 HOH HOH . G 6 HOH A 37 437 10 HOH HOH . G 6 HOH A 38 438 54 HOH HOH . G 6 HOH A 39 439 132 HOH HOH . G 6 HOH A 40 440 120 HOH HOH . G 6 HOH A 41 441 77 HOH HOH . G 6 HOH A 42 442 8 HOH HOH . G 6 HOH A 43 443 73 HOH HOH . G 6 HOH A 44 444 53 HOH HOH . G 6 HOH A 45 445 85 HOH HOH . G 6 HOH A 46 446 78 HOH HOH . G 6 HOH A 47 447 52 HOH HOH . G 6 HOH A 48 448 111 HOH HOH . G 6 HOH A 49 449 116 HOH HOH . G 6 HOH A 50 450 30 HOH HOH . G 6 HOH A 51 451 47 HOH HOH . G 6 HOH A 52 452 107 HOH HOH . G 6 HOH A 53 453 93 HOH HOH . G 6 HOH A 54 454 29 HOH HOH . G 6 HOH A 55 455 4 HOH HOH . G 6 HOH A 56 456 125 HOH HOH . G 6 HOH A 57 457 41 HOH HOH . G 6 HOH A 58 458 18 HOH HOH . G 6 HOH A 59 459 35 HOH HOH . G 6 HOH A 60 460 24 HOH HOH . G 6 HOH A 61 461 49 HOH HOH . G 6 HOH A 62 462 158 HOH HOH . G 6 HOH A 63 463 60 HOH HOH . G 6 HOH A 64 464 21 HOH HOH . G 6 HOH A 65 465 5 HOH HOH . G 6 HOH A 66 466 7 HOH HOH . G 6 HOH A 67 467 114 HOH HOH . G 6 HOH A 68 468 95 HOH HOH . G 6 HOH A 69 469 26 HOH HOH . G 6 HOH A 70 470 149 HOH HOH . G 6 HOH A 71 471 61 HOH HOH . G 6 HOH A 72 472 70 HOH HOH . G 6 HOH A 73 473 103 HOH HOH . G 6 HOH A 74 474 64 HOH HOH . G 6 HOH A 75 475 43 HOH HOH . G 6 HOH A 76 476 6 HOH HOH . G 6 HOH A 77 477 3 HOH HOH . G 6 HOH A 78 478 62 HOH HOH . G 6 HOH A 79 479 72 HOH HOH . G 6 HOH A 80 480 15 HOH HOH . G 6 HOH A 81 481 19 HOH HOH . G 6 HOH A 82 482 14 HOH HOH . G 6 HOH A 83 483 31 HOH HOH . G 6 HOH A 84 484 58 HOH HOH . G 6 HOH A 85 485 89 HOH HOH . G 6 HOH A 86 486 13 HOH HOH . G 6 HOH A 87 487 80 HOH HOH . G 6 HOH A 88 488 152 HOH HOH . G 6 HOH A 89 489 113 HOH HOH . G 6 HOH A 90 490 36 HOH HOH . G 6 HOH A 91 491 144 HOH HOH . G 6 HOH A 92 492 67 HOH HOH . G 6 HOH A 93 493 57 HOH HOH . G 6 HOH A 94 494 142 HOH HOH . G 6 HOH A 95 495 59 HOH HOH . G 6 HOH A 96 496 87 HOH HOH . G 6 HOH A 97 497 115 HOH HOH . G 6 HOH A 98 498 127 HOH HOH . G 6 HOH A 99 499 28 HOH HOH . G 6 HOH A 100 500 136 HOH HOH . G 6 HOH A 101 501 32 HOH HOH . G 6 HOH A 102 502 137 HOH HOH . G 6 HOH A 103 503 68 HOH HOH . G 6 HOH A 104 504 135 HOH HOH . G 6 HOH A 105 505 159 HOH HOH . G 6 HOH A 106 506 63 HOH HOH . G 6 HOH A 107 507 112 HOH HOH . G 6 HOH A 108 508 74 HOH HOH . G 6 HOH A 109 509 76 HOH HOH . G 6 HOH A 110 510 11 HOH HOH . G 6 HOH A 111 511 37 HOH HOH . G 6 HOH A 112 512 106 HOH HOH . G 6 HOH A 113 513 20 HOH HOH . G 6 HOH A 114 514 161 HOH HOH . G 6 HOH A 115 515 88 HOH HOH . G 6 HOH A 116 516 146 HOH HOH . G 6 HOH A 117 517 48 HOH HOH . G 6 HOH A 118 518 129 HOH HOH . G 6 HOH A 119 519 84 HOH HOH . G 6 HOH A 120 520 22 HOH HOH . G 6 HOH A 121 521 82 HOH HOH . G 6 HOH A 122 522 138 HOH HOH . G 6 HOH A 123 523 100 HOH HOH . G 6 HOH A 124 524 71 HOH HOH . G 6 HOH A 125 525 46 HOH HOH . G 6 HOH A 126 526 97 HOH HOH . G 6 HOH A 127 527 83 HOH HOH . G 6 HOH A 128 528 130 HOH HOH . G 6 HOH A 129 529 124 HOH HOH . G 6 HOH A 130 530 79 HOH HOH . G 6 HOH A 131 531 56 HOH HOH . G 6 HOH A 132 532 86 HOH HOH . G 6 HOH A 133 533 104 HOH HOH . G 6 HOH A 134 534 140 HOH HOH . G 6 HOH A 135 535 126 HOH HOH . G 6 HOH A 136 536 44 HOH HOH . G 6 HOH A 137 537 162 HOH HOH . G 6 HOH A 138 538 119 HOH HOH . G 6 HOH A 139 539 139 HOH HOH . G 6 HOH A 140 540 141 HOH HOH . G 6 HOH A 141 541 118 HOH HOH . G 6 HOH A 142 542 147 HOH HOH . G 6 HOH A 143 543 40 HOH HOH . G 6 HOH A 144 544 92 HOH HOH . G 6 HOH A 145 545 143 HOH HOH . G 6 HOH A 146 546 91 HOH HOH . G 6 HOH A 147 547 134 HOH HOH . G 6 HOH A 148 548 153 HOH HOH . G 6 HOH A 149 549 94 HOH HOH . G 6 HOH A 150 550 123 HOH HOH . G 6 HOH A 151 551 90 HOH HOH . G 6 HOH A 152 552 148 HOH HOH . G 6 HOH A 153 553 81 HOH HOH . G 6 HOH A 154 554 155 HOH HOH . G 6 HOH A 155 555 105 HOH HOH . G 6 HOH A 156 556 121 HOH HOH . G 6 HOH A 157 557 154 HOH HOH . G 6 HOH A 158 558 98 HOH HOH . G 6 HOH A 159 559 150 HOH HOH . G 6 HOH A 160 560 101 HOH HOH . G 6 HOH A 161 561 163 HOH HOH . G 6 HOH A 162 562 128 HOH HOH . G 6 HOH A 163 563 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 4 38.485 49.783 5.801 1 19.98 ? S DMS 304 A 1 HETATM 2 O O DMS . . . E 4 37.183 50.481 6.017 1 19.96 ? O DMS 304 A 1 HETATM 3 C C1 DMS . . . E 4 39.124 49.307 7.431 1 20.54 ? C1 DMS 304 A 1 HETATM 4 C C2 DMS . . . E 4 38.213 48.116 5.143 1 17.15 ? C2 DMS 304 A 1 HETATM 5 H H11 DMS . . . E 4 38.322 48.997 8.049 1 24.66 ? H11 DMS 304 A 1 HETATM 6 H H12 DMS . . . E 4 39.612 50.136 7.876 1 24.66 ? H12 DMS 304 A 1 HETATM 7 H H13 DMS . . . E 4 39.813 48.51 7.322 1 24.66 ? H13 DMS 304 A 1 HETATM 8 H H21 DMS . . . E 4 37.586 47.573 5.802 1 20.59 ? H21 DMS 304 A 1 HETATM 9 H H22 DMS . . . E 4 39.142 47.616 5.05 1 20.59 ? H22 DMS 304 A 1 HETATM 10 H H23 DMS . . . E 4 37.752 48.182 4.192 1 20.59 ? H23 DMS 304 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #