data_7BRY # _model_server_result.job_id MmARvikTjbW30a-MQZ7AcQ _model_server_result.datetime_utc '2024-11-17 11:00:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bry # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7BRY # _exptl.entry_id 7BRY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 190.242 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(6-methoxy-1H-indol-3-yl)ethanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BRY _cell.length_a 55.33 _cell.length_b 57.21 _cell.length_c 67.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BRY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 30 1_555 A SG CYS 137 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 25 A CYS 48 1_555 A SG CYS 41 A CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 109 A CYS 132 1_555 A SG CYS 210 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 116 A CYS 139 1_555 A SG CYS 183 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 148 A CYS 171 1_555 A SG CYS 162 A CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf6 A SG CYS 173 A CYS 196 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OE1 GLU 52 A GLU 75 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc2 A O ASN 54 A ASN 77 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 A O VAL 57 A VAL 80 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc4 A OE2 GLU 62 A GLU 85 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc5 C CA CA . A CA 302 1_555 E O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc6 C CA CA . A CA 302 1_555 E O HOH . A HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? # _chem_comp.formula 'C11 H14 N2 O' _chem_comp.formula_weight 190.242 _chem_comp.id F5X _chem_comp.mon_nstd_flag . _chem_comp.name 2-(6-methoxy-1H-indol-3-yl)ethanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 6-Methoxytryptamine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C9 F5X sing 83 n y N1 C4 F5X sing 84 n y C1 O1 F5X sing 85 n n C3 C4 F5X sing 86 n y C3 C2 F5X doub 87 n y C9 C8 F5X doub 88 n y C4 C5 F5X doub 89 n y O1 C2 F5X sing 90 n n C2 C7 F5X sing 91 n y C8 C5 F5X sing 92 n y C8 C10 F5X sing 93 n n C5 C6 F5X sing 94 n y C7 C6 F5X doub 95 n y C10 C11 F5X sing 96 n n C11 N2 F5X sing 97 n n N1 H8 F5X sing 98 n n C6 H5 F5X sing 99 n n C7 H6 F5X sing 100 n n C10 H9 F5X sing 101 n n C10 H10 F5X sing 102 n n C1 H3 F5X sing 103 n n C1 H1 F5X sing 104 n n C1 H2 F5X sing 105 n n C11 H11 F5X sing 106 n n C11 H12 F5X sing 107 n n C3 H4 F5X sing 108 n n C9 H7 F5X sing 109 n n N2 H14 F5X sing 110 n n N2 H15 F5X sing 111 n n # _atom_sites.entry_id 7BRY _atom_sites.fract_transf_matrix[1][1] 0.018073 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014832 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F5X A 1 301 3 F5X LIG . C 3 CA A 1 302 1 CA CA . D 4 SO4 A 1 303 2 SO4 SO4 . E 5 HOH A 1 401 6 HOH HOH . E 5 HOH A 2 402 173 HOH HOH . E 5 HOH A 3 403 74 HOH HOH . E 5 HOH A 4 404 140 HOH HOH . E 5 HOH A 5 405 42 HOH HOH . E 5 HOH A 6 406 8 HOH HOH . E 5 HOH A 7 407 96 HOH HOH . E 5 HOH A 8 408 3 HOH HOH . E 5 HOH A 9 409 168 HOH HOH . E 5 HOH A 10 410 67 HOH HOH . E 5 HOH A 11 411 99 HOH HOH . E 5 HOH A 12 412 21 HOH HOH . E 5 HOH A 13 413 126 HOH HOH . E 5 HOH A 14 414 65 HOH HOH . E 5 HOH A 15 415 80 HOH HOH . E 5 HOH A 16 416 46 HOH HOH . E 5 HOH A 17 417 124 HOH HOH . E 5 HOH A 18 418 90 HOH HOH . E 5 HOH A 19 419 49 HOH HOH . E 5 HOH A 20 420 102 HOH HOH . E 5 HOH A 21 421 33 HOH HOH . E 5 HOH A 22 422 135 HOH HOH . E 5 HOH A 23 423 58 HOH HOH . E 5 HOH A 24 424 34 HOH HOH . E 5 HOH A 25 425 79 HOH HOH . E 5 HOH A 26 426 123 HOH HOH . E 5 HOH A 27 427 45 HOH HOH . E 5 HOH A 28 428 100 HOH HOH . E 5 HOH A 29 429 36 HOH HOH . E 5 HOH A 30 430 52 HOH HOH . E 5 HOH A 31 431 20 HOH HOH . E 5 HOH A 32 432 150 HOH HOH . E 5 HOH A 33 433 101 HOH HOH . E 5 HOH A 34 434 37 HOH HOH . E 5 HOH A 35 435 47 HOH HOH . E 5 HOH A 36 436 28 HOH HOH . E 5 HOH A 37 437 23 HOH HOH . E 5 HOH A 38 438 88 HOH HOH . E 5 HOH A 39 439 11 HOH HOH . E 5 HOH A 40 440 113 HOH HOH . E 5 HOH A 41 441 22 HOH HOH . E 5 HOH A 42 442 84 HOH HOH . E 5 HOH A 43 443 24 HOH HOH . E 5 HOH A 44 444 106 HOH HOH . E 5 HOH A 45 445 145 HOH HOH . E 5 HOH A 46 446 31 HOH HOH . E 5 HOH A 47 447 142 HOH HOH . E 5 HOH A 48 448 82 HOH HOH . E 5 HOH A 49 449 38 HOH HOH . E 5 HOH A 50 450 60 HOH HOH . E 5 HOH A 51 451 59 HOH HOH . E 5 HOH A 52 452 26 HOH HOH . E 5 HOH A 53 453 18 HOH HOH . E 5 HOH A 54 454 98 HOH HOH . E 5 HOH A 55 455 132 HOH HOH . E 5 HOH A 56 456 4 HOH HOH . E 5 HOH A 57 457 7 HOH HOH . E 5 HOH A 58 458 171 HOH HOH . E 5 HOH A 59 459 5 HOH HOH . E 5 HOH A 60 460 127 HOH HOH . E 5 HOH A 61 461 25 HOH HOH . E 5 HOH A 62 462 2 HOH HOH . E 5 HOH A 63 463 17 HOH HOH . E 5 HOH A 64 464 144 HOH HOH . E 5 HOH A 65 465 51 HOH HOH . E 5 HOH A 66 466 10 HOH HOH . E 5 HOH A 67 467 129 HOH HOH . E 5 HOH A 68 468 35 HOH HOH . E 5 HOH A 69 469 69 HOH HOH . E 5 HOH A 70 470 165 HOH HOH . E 5 HOH A 71 471 116 HOH HOH . E 5 HOH A 72 472 13 HOH HOH . E 5 HOH A 73 473 119 HOH HOH . E 5 HOH A 74 474 130 HOH HOH . E 5 HOH A 75 475 14 HOH HOH . E 5 HOH A 76 476 78 HOH HOH . E 5 HOH A 77 477 143 HOH HOH . E 5 HOH A 78 478 1 HOH HOH . E 5 HOH A 79 479 48 HOH HOH . E 5 HOH A 80 480 169 HOH HOH . E 5 HOH A 81 481 133 HOH HOH . E 5 HOH A 82 482 44 HOH HOH . E 5 HOH A 83 483 85 HOH HOH . E 5 HOH A 84 484 40 HOH HOH . E 5 HOH A 85 485 108 HOH HOH . E 5 HOH A 86 486 172 HOH HOH . E 5 HOH A 87 487 12 HOH HOH . E 5 HOH A 88 488 76 HOH HOH . E 5 HOH A 89 489 91 HOH HOH . E 5 HOH A 90 490 166 HOH HOH . E 5 HOH A 91 491 109 HOH HOH . E 5 HOH A 92 492 105 HOH HOH . E 5 HOH A 93 493 68 HOH HOH . E 5 HOH A 94 494 41 HOH HOH . E 5 HOH A 95 495 39 HOH HOH . E 5 HOH A 96 496 16 HOH HOH . E 5 HOH A 97 497 161 HOH HOH . E 5 HOH A 98 498 43 HOH HOH . E 5 HOH A 99 499 121 HOH HOH . E 5 HOH A 100 500 92 HOH HOH . E 5 HOH A 101 501 137 HOH HOH . E 5 HOH A 102 502 9 HOH HOH . E 5 HOH A 103 503 55 HOH HOH . E 5 HOH A 104 504 120 HOH HOH . E 5 HOH A 105 505 56 HOH HOH . E 5 HOH A 106 506 77 HOH HOH . E 5 HOH A 107 507 94 HOH HOH . E 5 HOH A 108 508 63 HOH HOH . E 5 HOH A 109 509 62 HOH HOH . E 5 HOH A 110 510 72 HOH HOH . E 5 HOH A 111 511 29 HOH HOH . E 5 HOH A 112 512 81 HOH HOH . E 5 HOH A 113 513 149 HOH HOH . E 5 HOH A 114 514 32 HOH HOH . E 5 HOH A 115 515 73 HOH HOH . E 5 HOH A 116 516 75 HOH HOH . E 5 HOH A 117 517 30 HOH HOH . E 5 HOH A 118 518 104 HOH HOH . E 5 HOH A 119 519 86 HOH HOH . E 5 HOH A 120 520 117 HOH HOH . E 5 HOH A 121 521 50 HOH HOH . E 5 HOH A 122 522 89 HOH HOH . E 5 HOH A 123 523 115 HOH HOH . E 5 HOH A 124 524 70 HOH HOH . E 5 HOH A 125 525 146 HOH HOH . E 5 HOH A 126 526 19 HOH HOH . E 5 HOH A 127 527 15 HOH HOH . E 5 HOH A 128 528 154 HOH HOH . E 5 HOH A 129 529 170 HOH HOH . E 5 HOH A 130 530 122 HOH HOH . E 5 HOH A 131 531 125 HOH HOH . E 5 HOH A 132 532 57 HOH HOH . E 5 HOH A 133 533 27 HOH HOH . E 5 HOH A 134 534 54 HOH HOH . E 5 HOH A 135 535 118 HOH HOH . E 5 HOH A 136 536 128 HOH HOH . E 5 HOH A 137 537 111 HOH HOH . E 5 HOH A 138 538 97 HOH HOH . E 5 HOH A 139 539 151 HOH HOH . E 5 HOH A 140 540 53 HOH HOH . E 5 HOH A 141 541 157 HOH HOH . E 5 HOH A 142 542 66 HOH HOH . E 5 HOH A 143 543 64 HOH HOH . E 5 HOH A 144 544 147 HOH HOH . E 5 HOH A 145 545 158 HOH HOH . E 5 HOH A 146 546 167 HOH HOH . E 5 HOH A 147 547 141 HOH HOH . E 5 HOH A 148 548 83 HOH HOH . E 5 HOH A 149 549 138 HOH HOH . E 5 HOH A 150 550 148 HOH HOH . E 5 HOH A 151 551 87 HOH HOH . E 5 HOH A 152 552 110 HOH HOH . E 5 HOH A 153 553 107 HOH HOH . E 5 HOH A 154 554 139 HOH HOH . E 5 HOH A 155 555 164 HOH HOH . E 5 HOH A 156 556 174 HOH HOH . E 5 HOH A 157 557 134 HOH HOH . E 5 HOH A 158 558 71 HOH HOH . E 5 HOH A 159 559 95 HOH HOH . E 5 HOH A 160 560 131 HOH HOH . E 5 HOH A 161 561 136 HOH HOH . E 5 HOH A 162 562 112 HOH HOH . E 5 HOH A 163 563 162 HOH HOH . E 5 HOH A 164 564 155 HOH HOH . E 5 HOH A 165 565 153 HOH HOH . E 5 HOH A 166 566 93 HOH HOH . E 5 HOH A 167 567 156 HOH HOH . E 5 HOH A 168 568 103 HOH HOH . E 5 HOH A 169 569 163 HOH HOH . E 5 HOH A 170 570 160 HOH HOH . E 5 HOH A 171 571 159 HOH HOH . E 5 HOH A 172 572 61 HOH HOH . E 5 HOH A 173 573 114 HOH HOH . E 5 HOH A 174 574 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 F5X . . . B 2 55.784 44.289 13.88 0.84 29.56 ? N1 F5X 301 A 1 HETATM 2 C C4 F5X . . . B 2 56.841 44.883 14.526 0.84 23.48 ? C4 F5X 301 A 1 HETATM 3 C C5 F5X . . . B 2 57.309 43.972 15.498 0.84 20.16 ? C5 F5X 301 A 1 HETATM 4 C C6 F5X . . . B 2 58.393 44.333 16.307 0.84 24.89 ? C6 F5X 301 A 1 HETATM 5 C C7 F5X . . . B 2 58.976 45.563 16.138 0.84 23.04 ? C7 F5X 301 A 1 HETATM 6 C C8 F5X . . . B 2 56.486 42.796 15.407 0.84 15.24 ? C8 F5X 301 A 1 HETATM 7 C C10 F5X . . . B 2 56.619 41.556 16.239 0.84 20.83 ? C10 F5X 301 A 1 HETATM 8 C C1 F5X . . . B 2 58.752 48.589 14.106 0.84 26.68 ? C1 F5X 301 A 1 HETATM 9 C C11 F5X . . . B 2 57.069 41.764 17.677 0.84 27.99 ? C11 F5X 301 A 1 HETATM 10 C C2 F5X . . . B 2 58.499 46.463 15.17 0.84 30.88 ? C2 F5X 301 A 1 HETATM 11 C C3 F5X . . . B 2 57.43 46.141 14.353 0.84 31.46 ? C3 F5X 301 A 1 HETATM 12 C C9 F5X . . . B 2 55.586 43.04 14.406 0.84 24.55 ? C9 F5X 301 A 1 HETATM 13 N N2 F5X . . . B 2 57.007 40.471 18.388 0.84 21.89 ? N2 F5X 301 A 1 HETATM 14 O O1 F5X . . . B 2 59.168 47.659 15.1 0.84 31.64 ? O1 F5X 301 A 1 HETATM 15 H H8 F5X . . . B 2 55.312 44.65 13.235 0.84 35.48 ? H8 F5X 301 A 1 HETATM 16 H H5 F5X . . . B 2 58.719 43.738 16.961 0.84 29.87 ? H5 F5X 301 A 1 HETATM 17 H H6 F5X . . . B 2 59.709 45.809 16.678 0.84 27.66 ? H6 F5X 301 A 1 HETATM 18 H H9 F5X . . . B 2 57.258 40.962 15.804 0.84 25.01 ? H9 F5X 301 A 1 HETATM 19 H H10 F5X . . . B 2 55.755 41.103 16.254 0.84 25.01 ? H10 F5X 301 A 1 HETATM 20 H H3 F5X . . . B 2 59.304 49.386 14.157 0.84 32.03 ? H3 F5X 301 A 1 HETATM 21 H H1 F5X . . . B 2 57.823 48.829 14.257 0.84 32.03 ? H1 F5X 301 A 1 HETATM 22 H H2 F5X . . . B 2 58.844 48.186 13.228 0.84 32.03 ? H2 F5X 301 A 1 HETATM 23 H H11 F5X . . . B 2 56.489 42.419 18.121 0.84 33.6 ? H11 F5X 301 A 1 HETATM 24 H H12 F5X . . . B 2 57.987 42.113 17.696 0.84 33.6 ? H12 F5X 301 A 1 HETATM 25 H H4 F5X . . . B 2 57.108 46.745 13.702 0.84 37.76 ? H4 F5X 301 A 1 HETATM 26 H H7 F5X . . . B 2 54.92 42.437 14.114 0.84 29.47 ? H7 F5X 301 A 1 HETATM 27 H H14 F5X . . . B 2 57.481 39.845 17.969 0.84 26.28 ? H14 F5X 301 A 1 HETATM 28 H H15 F5X . . . B 2 56.173 40.176 18.424 0.84 26.28 ? H15 F5X 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 28 #