data_7BS1 # _model_server_result.job_id F9Ezh2WRoC6lu0nKe5tXng _model_server_result.datetime_utc '2024-11-17 11:52:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bs1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 7BS1 # _exptl.entry_id 7BS1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BS1 _cell.length_a 54.45 _cell.length_b 57.88 _cell.length_c 66.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BS1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 666 1_555 A SG CYS 137 A CYS 796 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 25 A CYS 684 1_555 A SG CYS 41 A CYS 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 109 A CYS 768 1_555 A SG CYS 210 A CYS 869 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 116 A CYS 775 1_555 A SG CYS 183 A CYS 842 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 148 A CYS 807 1_555 A SG CYS 162 A CYS 821 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 A SG CYS 173 A CYS 832 1_555 A SG CYS 197 A CYS 856 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 A OE1 GLU 52 A GLU 711 1_555 C CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc2 A O ASN 54 A ASN 713 1_555 C CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc3 A O VAL 57 A VAL 716 1_555 C CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc4 A OE2 GLU 62 A GLU 721 1_555 C CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc5 C CA CA . A CA 902 1_555 D O HOH . A HOH 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc6 C CA CA . A CA 902 1_555 D O HOH . A HOH 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 7BS1 _atom_sites.fract_transf_matrix[1][1] 0.018365 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BEN A 1 901 901 BEN LIG . C 3 CA A 1 902 1001 CA CA . D 4 HOH A 1 1001 99 HOH HOH . D 4 HOH A 2 1002 181 HOH HOH . D 4 HOH A 3 1003 132 HOH HOH . D 4 HOH A 4 1004 97 HOH HOH . D 4 HOH A 5 1005 170 HOH HOH . D 4 HOH A 6 1006 6 HOH HOH . D 4 HOH A 7 1007 179 HOH HOH . D 4 HOH A 8 1008 45 HOH HOH . D 4 HOH A 9 1009 163 HOH HOH . D 4 HOH A 10 1010 141 HOH HOH . D 4 HOH A 11 1011 9 HOH HOH . D 4 HOH A 12 1012 62 HOH HOH . D 4 HOH A 13 1013 18 HOH HOH . D 4 HOH A 14 1014 89 HOH HOH . D 4 HOH A 15 1015 139 HOH HOH . D 4 HOH A 16 1016 164 HOH HOH . D 4 HOH A 17 1017 11 HOH HOH . D 4 HOH A 18 1018 63 HOH HOH . D 4 HOH A 19 1019 92 HOH HOH . D 4 HOH A 20 1020 29 HOH HOH . D 4 HOH A 21 1021 86 HOH HOH . D 4 HOH A 22 1022 52 HOH HOH . D 4 HOH A 23 1023 64 HOH HOH . D 4 HOH A 24 1024 68 HOH HOH . D 4 HOH A 25 1025 49 HOH HOH . D 4 HOH A 26 1026 120 HOH HOH . D 4 HOH A 27 1027 67 HOH HOH . D 4 HOH A 28 1028 80 HOH HOH . D 4 HOH A 29 1029 146 HOH HOH . D 4 HOH A 30 1030 25 HOH HOH . D 4 HOH A 31 1031 185 HOH HOH . D 4 HOH A 32 1032 108 HOH HOH . D 4 HOH A 33 1033 81 HOH HOH . D 4 HOH A 34 1034 69 HOH HOH . D 4 HOH A 35 1035 24 HOH HOH . D 4 HOH A 36 1036 50 HOH HOH . D 4 HOH A 37 1037 123 HOH HOH . D 4 HOH A 38 1038 182 HOH HOH . D 4 HOH A 39 1039 147 HOH HOH . D 4 HOH A 40 1040 150 HOH HOH . D 4 HOH A 41 1041 55 HOH HOH . D 4 HOH A 42 1042 28 HOH HOH . D 4 HOH A 43 1043 143 HOH HOH . D 4 HOH A 44 1044 90 HOH HOH . D 4 HOH A 45 1045 138 HOH HOH . D 4 HOH A 46 1046 135 HOH HOH . D 4 HOH A 47 1047 47 HOH HOH . D 4 HOH A 48 1048 42 HOH HOH . D 4 HOH A 49 1049 112 HOH HOH . D 4 HOH A 50 1050 172 HOH HOH . D 4 HOH A 51 1051 107 HOH HOH . D 4 HOH A 52 1052 165 HOH HOH . D 4 HOH A 53 1053 4 HOH HOH . D 4 HOH A 54 1054 110 HOH HOH . D 4 HOH A 55 1055 190 HOH HOH . D 4 HOH A 56 1056 65 HOH HOH . D 4 HOH A 57 1057 21 HOH HOH . D 4 HOH A 58 1058 109 HOH HOH . D 4 HOH A 59 1059 39 HOH HOH . D 4 HOH A 60 1060 151 HOH HOH . D 4 HOH A 61 1061 153 HOH HOH . D 4 HOH A 62 1062 43 HOH HOH . D 4 HOH A 63 1063 22 HOH HOH . D 4 HOH A 64 1064 46 HOH HOH . D 4 HOH A 65 1065 93 HOH HOH . D 4 HOH A 66 1066 155 HOH HOH . D 4 HOH A 67 1067 126 HOH HOH . D 4 HOH A 68 1068 2 HOH HOH . D 4 HOH A 69 1069 36 HOH HOH . D 4 HOH A 70 1070 117 HOH HOH . D 4 HOH A 71 1071 7 HOH HOH . D 4 HOH A 72 1072 10 HOH HOH . D 4 HOH A 73 1073 124 HOH HOH . D 4 HOH A 74 1074 111 HOH HOH . D 4 HOH A 75 1075 5 HOH HOH . D 4 HOH A 76 1076 32 HOH HOH . D 4 HOH A 77 1077 30 HOH HOH . D 4 HOH A 78 1078 180 HOH HOH . D 4 HOH A 79 1079 149 HOH HOH . D 4 HOH A 80 1080 34 HOH HOH . D 4 HOH A 81 1081 71 HOH HOH . D 4 HOH A 82 1082 57 HOH HOH . D 4 HOH A 83 1083 198 HOH HOH . D 4 HOH A 84 1084 73 HOH HOH . D 4 HOH A 85 1085 158 HOH HOH . D 4 HOH A 86 1086 23 HOH HOH . D 4 HOH A 87 1087 8 HOH HOH . D 4 HOH A 88 1088 152 HOH HOH . D 4 HOH A 89 1089 199 HOH HOH . D 4 HOH A 90 1090 78 HOH HOH . D 4 HOH A 91 1091 169 HOH HOH . D 4 HOH A 92 1092 113 HOH HOH . D 4 HOH A 93 1093 166 HOH HOH . D 4 HOH A 94 1094 72 HOH HOH . D 4 HOH A 95 1095 168 HOH HOH . D 4 HOH A 96 1096 79 HOH HOH . D 4 HOH A 97 1097 38 HOH HOH . D 4 HOH A 98 1098 193 HOH HOH . D 4 HOH A 99 1099 94 HOH HOH . D 4 HOH A 100 1100 26 HOH HOH . D 4 HOH A 101 1101 27 HOH HOH . D 4 HOH A 102 1102 121 HOH HOH . D 4 HOH A 103 1103 44 HOH HOH . D 4 HOH A 104 1104 16 HOH HOH . D 4 HOH A 105 1105 95 HOH HOH . D 4 HOH A 106 1106 3 HOH HOH . D 4 HOH A 107 1107 188 HOH HOH . D 4 HOH A 108 1108 13 HOH HOH . D 4 HOH A 109 1109 17 HOH HOH . D 4 HOH A 110 1110 41 HOH HOH . D 4 HOH A 111 1111 200 HOH HOH . D 4 HOH A 112 1112 122 HOH HOH . D 4 HOH A 113 1113 37 HOH HOH . D 4 HOH A 114 1114 12 HOH HOH . D 4 HOH A 115 1115 20 HOH HOH . D 4 HOH A 116 1116 191 HOH HOH . D 4 HOH A 117 1117 136 HOH HOH . D 4 HOH A 118 1118 76 HOH HOH . D 4 HOH A 119 1119 173 HOH HOH . D 4 HOH A 120 1120 197 HOH HOH . D 4 HOH A 121 1121 85 HOH HOH . D 4 HOH A 122 1122 40 HOH HOH . D 4 HOH A 123 1123 53 HOH HOH . D 4 HOH A 124 1124 187 HOH HOH . D 4 HOH A 125 1125 33 HOH HOH . D 4 HOH A 126 1126 98 HOH HOH . D 4 HOH A 127 1127 96 HOH HOH . D 4 HOH A 128 1128 161 HOH HOH . D 4 HOH A 129 1129 177 HOH HOH . D 4 HOH A 130 1130 171 HOH HOH . D 4 HOH A 131 1131 91 HOH HOH . D 4 HOH A 132 1132 162 HOH HOH . D 4 HOH A 133 1133 19 HOH HOH . D 4 HOH A 134 1134 77 HOH HOH . D 4 HOH A 135 1135 125 HOH HOH . D 4 HOH A 136 1136 174 HOH HOH . D 4 HOH A 137 1137 134 HOH HOH . D 4 HOH A 138 1138 137 HOH HOH . D 4 HOH A 139 1139 14 HOH HOH . D 4 HOH A 140 1140 59 HOH HOH . D 4 HOH A 141 1141 15 HOH HOH . D 4 HOH A 142 1142 58 HOH HOH . D 4 HOH A 143 1143 154 HOH HOH . D 4 HOH A 144 1144 119 HOH HOH . D 4 HOH A 145 1145 61 HOH HOH . D 4 HOH A 146 1146 105 HOH HOH . D 4 HOH A 147 1147 160 HOH HOH . D 4 HOH A 148 1148 133 HOH HOH . D 4 HOH A 149 1149 75 HOH HOH . D 4 HOH A 150 1150 83 HOH HOH . D 4 HOH A 151 1151 31 HOH HOH . D 4 HOH A 152 1152 176 HOH HOH . D 4 HOH A 153 1153 103 HOH HOH . D 4 HOH A 154 1154 51 HOH HOH . D 4 HOH A 155 1155 35 HOH HOH . D 4 HOH A 156 1156 114 HOH HOH . D 4 HOH A 157 1157 156 HOH HOH . D 4 HOH A 158 1158 186 HOH HOH . D 4 HOH A 159 1159 144 HOH HOH . D 4 HOH A 160 1160 183 HOH HOH . D 4 HOH A 161 1161 106 HOH HOH . D 4 HOH A 162 1162 167 HOH HOH . D 4 HOH A 163 1163 54 HOH HOH . D 4 HOH A 164 1164 192 HOH HOH . D 4 HOH A 165 1165 130 HOH HOH . D 4 HOH A 166 1166 82 HOH HOH . D 4 HOH A 167 1167 48 HOH HOH . D 4 HOH A 168 1168 104 HOH HOH . D 4 HOH A 169 1169 70 HOH HOH . D 4 HOH A 170 1170 56 HOH HOH . D 4 HOH A 171 1171 102 HOH HOH . D 4 HOH A 172 1172 175 HOH HOH . D 4 HOH A 173 1173 66 HOH HOH . D 4 HOH A 174 1174 129 HOH HOH . D 4 HOH A 175 1175 157 HOH HOH . D 4 HOH A 176 1176 148 HOH HOH . D 4 HOH A 177 1177 159 HOH HOH . D 4 HOH A 178 1178 88 HOH HOH . D 4 HOH A 179 1179 196 HOH HOH . D 4 HOH A 180 1180 189 HOH HOH . D 4 HOH A 181 1181 201 HOH HOH . D 4 HOH A 182 1182 142 HOH HOH . D 4 HOH A 183 1183 140 HOH HOH . D 4 HOH A 184 1184 115 HOH HOH . D 4 HOH A 185 1185 127 HOH HOH . D 4 HOH A 186 1186 60 HOH HOH . D 4 HOH A 187 1187 100 HOH HOH . D 4 HOH A 188 1188 101 HOH HOH . D 4 HOH A 189 1189 84 HOH HOH . D 4 HOH A 190 1190 131 HOH HOH . D 4 HOH A 191 1191 128 HOH HOH . D 4 HOH A 192 1192 184 HOH HOH . D 4 HOH A 193 1193 178 HOH HOH . D 4 HOH A 194 1194 145 HOH HOH . D 4 HOH A 195 1195 195 HOH HOH . D 4 HOH A 196 1196 118 HOH HOH . D 4 HOH A 197 1197 74 HOH HOH . D 4 HOH A 198 1198 87 HOH HOH . D 4 HOH A 199 1199 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . B 2 56.18 43.22 16.847 0.93 13.28 ? C1 BEN 901 A 1 HETATM 2 C C2 BEN . . . B 2 56.405 44.589 16.773 0.93 19.64 ? C2 BEN 901 A 1 HETATM 3 C C3 BEN . . . B 2 56.103 45.28 15.614 0.93 21.05 ? C3 BEN 901 A 1 HETATM 4 C C4 BEN . . . B 2 55.589 44.618 14.524 0.93 19.34 ? C4 BEN 901 A 1 HETATM 5 C C5 BEN . . . B 2 55.361 43.266 14.587 0.93 17.4 ? C5 BEN 901 A 1 HETATM 6 C C6 BEN . . . B 2 55.652 42.565 15.744 0.93 14.74 ? C6 BEN 901 A 1 HETATM 7 C C BEN . . . B 2 56.519 42.471 18.082 0.93 14.17 ? C BEN 901 A 1 HETATM 8 N N1 BEN . . . B 2 57.198 43.011 19.028 0.93 16.24 ? N1 BEN 901 A 1 HETATM 9 N N2 BEN . . . B 2 56.124 41.19 18.167 0.93 12.45 ? N2 BEN 901 A 1 HETATM 10 H H2 BEN . . . B 2 56.763 45.048 17.512 0.93 23.58 ? H2 BEN 901 A 1 HETATM 11 H H3 BEN . . . B 2 56.251 46.21 15.571 0.93 25.27 ? H3 BEN 901 A 1 HETATM 12 H H4 BEN . . . B 2 55.392 45.093 13.733 0.93 23.22 ? H4 BEN 901 A 1 HETATM 13 H H5 BEN . . . B 2 55.006 42.813 13.84 0.93 20.89 ? H5 BEN 901 A 1 HETATM 14 H H6 BEN . . . B 2 55.489 41.639 15.781 0.93 17.7 ? H6 BEN 901 A 1 HETATM 15 H HN1 BEN . . . B 2 57.287 42.543 19.699 0.93 19.5 ? HN1 BEN 901 A 1 HETATM 16 H HN21 BEN . . . B 2 56.333 40.71 18.883 0.93 14.95 ? HN21 BEN 901 A 1 HETATM 17 H HN22 BEN . . . B 2 55.656 40.827 17.507 0.93 14.95 ? HN22 BEN 901 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 17 #