data_7BSJ # _model_server_result.job_id O5N0V44bEGx9luSinjBWLw _model_server_result.datetime_utc '2024-11-28 20:56:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bsj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 7BSJ # _exptl.entry_id 7BSJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 129.64 _cell.angle_gamma 90 _cell.entry_id 7BSJ _cell.length_a 204.508 _cell.length_b 58.443 _cell.length_c 141.82 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BSJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 318.540264 0 109.211051 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 H N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 237 A GLU 255 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc2 A OD1 ASP 238 A ASP 256 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? metalc ? metalc3 A OD2 ASP 238 A ASP 256 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc4 A OD1 ASP 261 A ASP 279 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc5 D MG MG . A MG 602 1_555 G O4 TTN . A TTN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc6 D MG MG . A MG 602 1_555 G O3 TTN . A TTN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc7 B OE1 GLU 237 B GLU 255 1_555 I MG MG . B MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc8 B OD1 ASP 238 B ASP 256 1_555 I MG MG . B MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc9 B OD1 ASP 261 B ASP 279 1_555 I MG MG . B MG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc10 I MG MG . B MG 1602 1_555 L O3 TTN . B TTN 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc11 I MG MG . B MG 1602 1_555 L O4 TTN . B TTN 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 248 n n PA O2A NAD sing 249 n n PA O5B NAD sing 250 n n PA O3 NAD sing 251 n n O2A HOA2 NAD sing 252 n n O5B C5B NAD sing 253 n n C5B C4B NAD sing 254 n n C5B H51A NAD sing 255 n n C5B H52A NAD sing 256 n n C4B O4B NAD sing 257 n n C4B C3B NAD sing 258 n n C4B H4B NAD sing 259 n n O4B C1B NAD sing 260 n n C3B O3B NAD sing 261 n n C3B C2B NAD sing 262 n n C3B H3B NAD sing 263 n n O3B HO3A NAD sing 264 n n C2B O2B NAD sing 265 n n C2B C1B NAD sing 266 n n C2B H2B NAD sing 267 n n O2B HO2A NAD sing 268 n n C1B N9A NAD sing 269 n n C1B H1B NAD sing 270 n n N9A C8A NAD sing 271 n y N9A C4A NAD sing 272 n y C8A N7A NAD doub 273 n y C8A H8A NAD sing 274 n n N7A C5A NAD sing 275 n y C5A C6A NAD sing 276 n y C5A C4A NAD doub 277 n y C6A N6A NAD sing 278 n n C6A N1A NAD doub 279 n y N6A H61A NAD sing 280 n n N6A H62A NAD sing 281 n n N1A C2A NAD sing 282 n y C2A N3A NAD doub 283 n y C2A H2A NAD sing 284 n n N3A C4A NAD sing 285 n y O3 PN NAD sing 286 n n PN O1N NAD doub 287 n n PN O2N NAD sing 288 n n PN O5D NAD sing 289 n n O5D C5D NAD sing 290 n n C5D C4D NAD sing 291 n n C5D H51N NAD sing 292 n n C5D H52N NAD sing 293 n n C4D O4D NAD sing 294 n n C4D C3D NAD sing 295 n n C4D H4D NAD sing 296 n n O4D C1D NAD sing 297 n n C3D O3D NAD sing 298 n n C3D C2D NAD sing 299 n n C3D H3D NAD sing 300 n n O3D HO3N NAD sing 301 n n C2D O2D NAD sing 302 n n C2D C1D NAD sing 303 n n C2D H2D NAD sing 304 n n O2D HO2N NAD sing 305 n n C1D N1N NAD sing 306 n n C1D H1D NAD sing 307 n n N1N C2N NAD sing 308 n y N1N C6N NAD doub 309 n y C2N C3N NAD doub 310 n y C2N H2N NAD sing 311 n n C3N C7N NAD sing 312 n n C3N C4N NAD sing 313 n y C7N O7N NAD doub 314 n n C7N N7N NAD sing 315 n n N7N H71N NAD sing 316 n n N7N H72N NAD sing 317 n n C4N C5N NAD doub 318 n y C4N H4N NAD sing 319 n n C5N C6N NAD sing 320 n y C5N H5N NAD sing 321 n n C6N H6N NAD sing 322 n n # _atom_sites.entry_id 7BSJ _atom_sites.fract_transf_matrix[1][1] 0.00489 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004051 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 601 601 NAD NAD . D 3 MG A 1 602 604 MG MG . E 2 NAD A 1 603 701 NAD NAD . F 4 FUM A 1 604 801 FUM FUM . G 5 TTN A 1 605 901 TTN TTN . H 2 NAD B 1 1601 1601 NAD NAD . I 3 MG B 1 1602 1604 MG MG . J 2 NAD B 1 1603 1701 NAD NAD . K 4 FUM B 1 1604 1801 FUM FUM . L 5 TTN B 1 1605 1901 TTN TTN . M 6 HOH A 1 701 199 HOH HOH . M 6 HOH A 2 702 201 HOH HOH . M 6 HOH A 3 703 200 HOH HOH . M 6 HOH A 4 704 136 HOH HOH . M 6 HOH A 5 705 202 HOH HOH . M 6 HOH A 6 706 86 HOH HOH . M 6 HOH A 7 707 81 HOH HOH . M 6 HOH A 8 708 137 HOH HOH . M 6 HOH A 9 709 161 HOH HOH . M 6 HOH A 10 710 168 HOH HOH . N 6 HOH B 1 1701 198 HOH HOH . N 6 HOH B 2 1702 108 HOH HOH . N 6 HOH B 3 1703 173 HOH HOH . N 6 HOH B 4 1704 107 HOH HOH . N 6 HOH B 5 1705 197 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 173.081 15.483 29.039 1 56.27 ? PA NAD 603 A 1 HETATM 2 O O1A NAD . . . E 2 172.896 15.34 27.547 1 55.94 ? O1A NAD 603 A 1 HETATM 3 O O2A NAD . . . E 2 173.352 16.838 29.647 1 55.51 ? O2A NAD 603 A 1 HETATM 4 O O5B NAD . . . E 2 174.292 14.546 29.553 1 52.86 ? O5B NAD 603 A 1 HETATM 5 C C5B NAD . . . E 2 174.691 13.353 28.875 1 48.87 ? C5B NAD 603 A 1 HETATM 6 C C4B NAD . . . E 2 174.719 12.179 29.85 1 46.05 ? C4B NAD 603 A 1 HETATM 7 O O4B NAD . . . E 2 175.697 12.39 30.874 1 43.29 ? O4B NAD 603 A 1 HETATM 8 C C3B NAD . . . E 2 173.398 12.002 30.575 1 44.89 ? C3B NAD 603 A 1 HETATM 9 O O3B NAD . . . E 2 173.134 10.601 30.696 1 47.32 ? O3B NAD 603 A 1 HETATM 10 C C2B NAD . . . E 2 173.605 12.648 31.932 1 42.58 ? C2B NAD 603 A 1 HETATM 11 O O2B NAD . . . E 2 172.832 12.042 32.972 1 41.97 ? O2B NAD 603 A 1 HETATM 12 C C1B NAD . . . E 2 175.079 12.402 32.166 1 41.43 ? C1B NAD 603 A 1 HETATM 13 N N9A NAD . . . E 2 175.762 13.409 33.013 1 39.9 ? N9A NAD 603 A 1 HETATM 14 C C8A NAD . . . E 2 175.809 14.741 32.821 1 38.44 ? C8A NAD 603 A 1 HETATM 15 N N7A NAD . . . E 2 176.555 15.328 33.793 1 38.53 ? N7A NAD 603 A 1 HETATM 16 C C5A NAD . . . E 2 177.014 14.357 34.618 1 38.95 ? C5A NAD 603 A 1 HETATM 17 C C6A NAD . . . E 2 177.862 14.259 35.844 1 37.32 ? C6A NAD 603 A 1 HETATM 18 N N6A NAD . . . E 2 178.406 15.352 36.423 1 36.17 ? N6A NAD 603 A 1 HETATM 19 N N1A NAD . . . E 2 178.071 13.037 36.378 1 36.44 ? N1A NAD 603 A 1 HETATM 20 C C2A NAD . . . E 2 177.555 11.919 35.84 1 36.87 ? C2A NAD 603 A 1 HETATM 21 N N3A NAD . . . E 2 176.784 11.94 34.738 1 38.23 ? N3A NAD 603 A 1 HETATM 22 C C4A NAD . . . E 2 176.482 13.095 34.093 1 38.77 ? C4A NAD 603 A 1 HETATM 23 O O3 NAD . . . E 2 171.789 14.788 29.709 1 62.56 ? O3 NAD 603 A 1 HETATM 24 P PN NAD . . . E 2 170.492 15.597 30.226 1 68.85 ? PN NAD 603 A 1 HETATM 25 O O1N NAD . . . E 2 169.512 14.559 30.721 1 65.67 ? O1N NAD 603 A 1 HETATM 26 O O2N NAD . . . E 2 170.089 16.572 29.145 1 64.34 ? O2N NAD 603 A 1 HETATM 27 O O5D NAD . . . E 2 171.058 16.391 31.524 1 75.42 ? O5D NAD 603 A 1 HETATM 28 C C5D NAD . . . E 2 171.172 17.815 31.616 1 83.46 ? C5D NAD 603 A 1 HETATM 29 C C4D NAD . . . E 2 172.147 18.185 32.742 1 90.82 ? C4D NAD 603 A 1 HETATM 30 O O4D NAD . . . E 2 173.176 19.068 32.265 1 93.52 ? O4D NAD 603 A 1 HETATM 31 C C3D NAD . . . E 2 171.461 18.88 33.917 1 95.29 ? C3D NAD 603 A 1 HETATM 32 O O3D NAD . . . E 2 171.559 18.084 35.107 1 97.88 ? O3D NAD 603 A 1 HETATM 33 C C2D NAD . . . E 2 172.15 20.229 34.069 1 96.32 ? C2D NAD 603 A 1 HETATM 34 O O2D NAD . . . E 2 172.602 20.446 35.409 1 95.63 ? O2D NAD 603 A 1 HETATM 35 C C1D NAD . . . E 2 173.331 20.227 33.103 1 97.87 ? C1D NAD 603 A 1 HETATM 36 N N1N NAD . . . E 2 173.402 21.5 32.347 1 101.84 ? N1N NAD 603 A 1 HETATM 37 C C2N NAD . . . E 2 173.968 22.577 32.939 1 102.01 ? C2N NAD 603 A 1 HETATM 38 C C3N NAD . . . E 2 174.067 23.813 32.283 1 102.34 ? C3N NAD 603 A 1 HETATM 39 C C7N NAD . . . E 2 174.71 25.001 32.966 1 102.41 ? C7N NAD 603 A 1 HETATM 40 O O7N NAD . . . E 2 175.587 24.813 33.794 1 102.58 ? O7N NAD 603 A 1 HETATM 41 N N7N NAD . . . E 2 174.335 26.25 32.673 1 99.85 ? N7N NAD 603 A 1 HETATM 42 C C4N NAD . . . E 2 173.568 23.918 30.986 1 103.24 ? C4N NAD 603 A 1 HETATM 43 C C5N NAD . . . E 2 172.986 22.801 30.389 1 104.36 ? C5N NAD 603 A 1 HETATM 44 C C6N NAD . . . E 2 172.913 21.597 31.092 1 103.91 ? C6N NAD 603 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #