data_7BSM # _model_server_result.job_id ktVth2i-Tgx_3gr1LZoVNg _model_server_result.datetime_utc '2024-11-14 09:13:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bsm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":202}' # _entry.id 7BSM # _exptl.entry_id 7BSM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BSM _cell.length_a 170.359 _cell.length_b 170.359 _cell.length_c 192.499 _cell.Z_PDB 112 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BSM _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? heptameric 7 author_defined_assembly 1 ? heptameric 7 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,O,P,Q 1 1 H,I,J,K,L,M,N,R,S,T,U,V,W,X,Y,Z 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 W N N ? 3 X N N ? 3 Z N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 MAN _pdbx_entity_branch_link.comp_id_2 MAN _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n O MAN 1 O 1 MAN DaD 201 MAN 2 n O MAN 2 O 2 MAN DaD 201 MAN 2 n P MAN 1 P 1 MAN FaF 201 MAN 2 n P MAN 2 P 2 MAN FaF 201 MAN 2 n Q MAN 1 Q 1 MAN GaG 201 MAN 2 n Q MAN 2 Q 2 MAN GaG 201 MAN 2 n R MAN 1 R 1 MAN JaJ 201 MAN 2 n R MAN 2 R 2 MAN JaJ 201 MAN 2 n S MAN 1 S 1 MAN KaK 201 MAN 2 n S MAN 2 S 2 MAN KaK 201 MAN 2 n T MAN 1 T 1 MAN LaL 201 MAN 2 n T MAN 2 T 2 MAN LaL 201 MAN 2 n U MAN 1 U 1 MAN MaM 201 MAN 2 n U MAN 2 U 2 MAN MaM 201 MAN 2 n V MAN 1 V 1 MAN NaN 201 MAN 2 n V MAN 2 V 2 MAN NaN 201 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 O O2 MAN . O MAN 1 1_555 O C1 MAN . O MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 P O2 MAN . P MAN 1 1_555 P C1 MAN . P MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? covale ? covale3 Q O2 MAN . Q MAN 1 1_555 Q C1 MAN . Q MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale4 R O2 MAN . R MAN 1 1_555 R C1 MAN . R MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale5 S O2 MAN . S MAN 1 1_555 S C1 MAN . S MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale6 T O2 MAN . T MAN 1 1_555 T C1 MAN . T MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale7 U O2 MAN . U MAN 1 1_555 U C1 MAN . U MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale8 V O2 MAN . V MAN 1 1_555 V C1 MAN . V MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 216 n n C1 O1 MAN sing 217 n n C1 O5 MAN sing 218 n n C1 H1 MAN sing 219 n n C2 C3 MAN sing 220 n n C2 O2 MAN sing 221 n n C2 H2 MAN sing 222 n n C3 C4 MAN sing 223 n n C3 O3 MAN sing 224 n n C3 H3 MAN sing 225 n n C4 C5 MAN sing 226 n n C4 O4 MAN sing 227 n n C4 H4 MAN sing 228 n n C5 C6 MAN sing 229 n n C5 O5 MAN sing 230 n n C5 H5 MAN sing 231 n n C6 O6 MAN sing 232 n n C6 H61 MAN sing 233 n n C6 H62 MAN sing 234 n n O1 HO1 MAN sing 235 n n O2 HO2 MAN sing 236 n n O3 HO3 MAN sing 237 n n O4 HO4 MAN sing 238 n n O6 HO6 MAN sing 239 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7BSM _atom_sites.fract_transf_matrix[1][1] 0.00587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code W 3 MAN H 1 201 201 MAN MAN . X 3 MAN H 1 202 201 MAN MAN . Y 4 ALA I 1 201 145 ALA ALA . Z 3 MAN I 1 202 201 MAN MAN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . X 3 -24.959 -12.353 -6.432 1 92.67 ? C1 MAN 202 H 1 HETATM 2 C C2 MAN . . . X 3 -23.644 -13.056 -7.211 1 99.15 ? C2 MAN 202 H 1 HETATM 3 C C3 MAN . . . X 3 -22.408 -12.121 -7.304 1 93.4 ? C3 MAN 202 H 1 HETATM 4 C C4 MAN . . . X 3 -22.862 -10.853 -8.003 1 82.53 ? C4 MAN 202 H 1 HETATM 5 C C5 MAN . . . X 3 -24.006 -10.215 -7.093 1 70.93 ? C5 MAN 202 H 1 HETATM 6 C C6 MAN . . . X 3 -24.284 -8.743 -7.373 1 56.58 ? C6 MAN 202 H 1 HETATM 7 O O2 MAN . . . X 3 -23.905 -13.477 -8.58 1 108.68 ? O2 MAN 202 H 1 HETATM 8 O O3 MAN . . . X 3 -21.217 -12.743 -7.95 1 86.61 ? O3 MAN 202 H 1 HETATM 9 O O4 MAN . . . X 3 -21.699 -10.031 -8.061 1 89.7 ? O4 MAN 202 H 1 HETATM 10 O O5 MAN . . . X 3 -25.238 -11.009 -7.057 1 74.4 ? O5 MAN 202 H 1 HETATM 11 O O6 MAN . . . X 3 -24.814 -8.55 -8.655 1 59.12 ? O6 MAN 202 H 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #