data_7BSQ # _model_server_result.job_id SK8FpohlSWFFkvKMhS5VAQ _model_server_result.datetime_utc '2025-02-05 03:49:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bsq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1102}' # _entry.id 7BSQ # _exptl.entry_id 7BSQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BSQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BSQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 MAN NAG C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG C 401 NAG 3 n C NAG 2 B 2 NAG C 402 NAG 3 n C MAN 3 B 3 MAN C 403 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 91 C CYS 91 1_555 B SG CYS 104 C CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 94 C CYS 94 1_555 B SG CYS 102 C CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 157 C CYS 157 1_555 B SG CYS 171 C CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 B ND2 ASN 180 C ASN 180 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale2 B ND2 ASN 294 C ASN 294 1_555 H C1 NAG . C NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 C O3 NAG . B NAG 2 1_555 C C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 A O ILE 807 A ILE 814 1_555 F MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc2 E O3B ADP . A ADP 1102 1_555 G MG MG . A MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc3 E O2A ADP . A ADP 1102 1_555 G MG MG . A MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7BSQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ALF A 1 1101 1100 ALF ALF . E 5 ADP A 1 1102 1101 ADP ADP . F 6 MG A 1 1103 1103 MG MG . G 6 MG A 1 1104 1104 MG MG . H 7 NAG C 1 404 404 NAG NAG . I 7 NAG C 1 405 405 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 5 97.946 114.86 146.747 1 63.52 ? PB ADP 1102 A 1 HETATM 2 O O1B ADP . . . E 5 98.801 114.235 145.684 1 63.52 ? O1B ADP 1102 A 1 HETATM 3 O O2B ADP . . . E 5 98.695 115.152 148.007 1 63.52 ? O2B ADP 1102 A 1 HETATM 4 O O3B ADP . . . E 5 96.67 114.116 146.988 1 63.52 ? O3B ADP 1102 A 1 HETATM 5 P PA ADP . . . E 5 96.156 117.098 146.447 1 63.52 ? PA ADP 1102 A 1 HETATM 6 O O1A ADP . . . E 5 96.319 118.453 145.853 1 63.52 ? O1A ADP 1102 A 1 HETATM 7 O O2A ADP . . . E 5 94.978 116.257 146.087 1 63.52 ? O2A ADP 1102 A 1 HETATM 8 O O3A ADP . . . E 5 97.476 116.26 146.144 1 63.52 ? O3A ADP 1102 A 1 HETATM 9 O O5' ADP . . . E 5 96.254 117.218 148.029 1 63.52 ? O5' ADP 1102 A 1 HETATM 10 C C5' ADP . . . E 5 97.273 118.113 148.482 1 63.52 ? C5' ADP 1102 A 1 HETATM 11 C C4' ADP . . . E 5 97.274 118.168 149.99 1 63.52 ? C4' ADP 1102 A 1 HETATM 12 O O4' ADP . . . E 5 95.999 118.656 150.467 1 63.52 ? O4' ADP 1102 A 1 HETATM 13 C C3' ADP . . . E 5 97.458 116.847 150.731 1 63.52 ? C3' ADP 1102 A 1 HETATM 14 O O3' ADP . . . E 5 98.819 116.465 150.846 1 63.52 ? O3' ADP 1102 A 1 HETATM 15 C C2' ADP . . . E 5 96.866 117.179 152.095 1 63.52 ? C2' ADP 1102 A 1 HETATM 16 O O2' ADP . . . E 5 97.809 117.888 152.86 1 63.52 ? O2' ADP 1102 A 1 HETATM 17 C C1' ADP . . . E 5 95.693 118.07 151.714 1 63.52 ? C1' ADP 1102 A 1 HETATM 18 N N9 ADP . . . E 5 94.405 117.402 151.586 1 63.52 ? N9 ADP 1102 A 1 HETATM 19 C C8 ADP . . . E 5 94.011 116.507 150.624 1 63.52 ? C8 ADP 1102 A 1 HETATM 20 N N7 ADP . . . E 5 92.767 116.124 150.743 1 63.52 ? N7 ADP 1102 A 1 HETATM 21 C C5 ADP . . . E 5 92.302 116.829 151.84 1 63.52 ? C5 ADP 1102 A 1 HETATM 22 C C6 ADP . . . E 5 91.049 116.866 152.471 1 63.52 ? C6 ADP 1102 A 1 HETATM 23 N N6 ADP . . . E 5 89.998 116.177 152.05 1 63.52 ? N6 ADP 1102 A 1 HETATM 24 N N1 ADP . . . E 5 90.911 117.685 153.535 1 63.52 ? N1 ADP 1102 A 1 HETATM 25 C C2 ADP . . . E 5 91.972 118.39 153.932 1 63.52 ? C2 ADP 1102 A 1 HETATM 26 N N3 ADP . . . E 5 93.195 118.436 153.423 1 63.52 ? N3 ADP 1102 A 1 HETATM 27 C C4 ADP . . . E 5 93.298 117.624 152.364 1 63.52 ? C4 ADP 1102 A 1 HETATM 28 H "H5'1" ADP . . . E 5 97.11 119.002 148.114 1 63.52 ? "H5'1" ADP 1102 A 1 HETATM 29 H "H5'2" ADP . . . E 5 98.135 117.803 148.159 1 63.52 ? "H5'2" ADP 1102 A 1 HETATM 30 H H4' ADP . . . E 5 97.965 118.779 150.272 1 63.52 ? H4' ADP 1102 A 1 HETATM 31 H H3' ADP . . . E 5 96.941 116.146 150.296 1 63.52 ? H3' ADP 1102 A 1 HETATM 32 H HO3' ADP . . . E 5 98.852 115.804 151.372 1 63.52 ? HO3' ADP 1102 A 1 HETATM 33 H H2' ADP . . . E 5 96.563 116.37 152.561 1 63.52 ? H2' ADP 1102 A 1 HETATM 34 H HO2' ADP . . . E 5 98.497 117.406 152.937 1 63.52 ? HO2' ADP 1102 A 1 HETATM 35 H H1' ADP . . . E 5 95.618 118.766 152.385 1 63.52 ? H1' ADP 1102 A 1 HETATM 36 H H8 ADP . . . E 5 94.58 116.188 149.956 1 63.52 ? H8 ADP 1102 A 1 HETATM 37 H HN61 ADP . . . E 5 89.256 116.2 152.507 1 63.52 ? HN61 ADP 1102 A 1 HETATM 38 H HN62 ADP . . . E 5 90.049 115.733 151.301 1 63.52 ? HN62 ADP 1102 A 1 HETATM 39 H H2 ADP . . . E 5 91.831 118.932 154.675 1 63.52 ? H2 ADP 1102 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #