data_7BT2 # _model_server_result.job_id ML1SQGeb7YbSCi8E9Hdyrg _model_server_result.datetime_utc '2024-11-24 09:23:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bt2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1007}' # _entry.id 7BT2 # _exptl.entry_id 7BT2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BT2 _cell.length_a 121.604 _cell.length_b 270.382 _cell.length_c 97.34 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BT2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 875 A CYS 875 1_555 A SG CYS 887 A CYS 887 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A O LEU 710 A LEU 710 1_555 C K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc2 A O LYS 711 A LYS 711 1_555 C K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc3 A O ALA 713 A ALA 713 1_555 C K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc4 A OE1 GLU 731 A GLU 731 1_555 C K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc5 A OE2 GLU 731 A GLU 731 1_555 C K K . A K 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.269 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 286 n n C1 H11 MPD sing 287 n n C1 H12 MPD sing 288 n n C1 H13 MPD sing 289 n n C2 O2 MPD sing 290 n n C2 CM MPD sing 291 n n C2 C3 MPD sing 292 n n O2 HO2 MPD sing 293 n n CM HM1 MPD sing 294 n n CM HM2 MPD sing 295 n n CM HM3 MPD sing 296 n n C3 C4 MPD sing 297 n n C3 H31 MPD sing 298 n n C3 H32 MPD sing 299 n n C4 O4 MPD sing 300 n n C4 C5 MPD sing 301 n n C4 H4 MPD sing 302 n n O4 HO4 MPD sing 303 n n C5 H51 MPD sing 304 n n C5 H52 MPD sing 305 n n C5 H53 MPD sing 306 n n # _atom_sites.entry_id 7BT2 _atom_sites.fract_transf_matrix[1][1] 0.008223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1001 998 ATP ATP . C 3 K A 1 1002 1001 K K . D 4 PCW A 1 1003 1003 PCW PCW . E 4 PCW A 1 1004 1004 PCW PCW . F 4 PCW A 1 1005 1005 PCW PCW . G 4 PCW A 1 1006 1006 PCW PCW . H 5 MPD A 1 1007 1007 MPD MPD . I 6 HOH A 1 1101 2084 HOH HOH . I 6 HOH A 2 1102 2011 HOH HOH . I 6 HOH A 3 1103 2079 HOH HOH . I 6 HOH A 4 1104 2086 HOH HOH . I 6 HOH A 5 1105 2085 HOH HOH . I 6 HOH A 6 1106 2071 HOH HOH . I 6 HOH A 7 1107 2081 HOH HOH . I 6 HOH A 8 1108 2076 HOH HOH . I 6 HOH A 9 1109 2005 HOH HOH . I 6 HOH A 10 1110 2087 HOH HOH . I 6 HOH A 11 1111 2013 HOH HOH . I 6 HOH A 12 1112 2060 HOH HOH . I 6 HOH A 13 1113 2024 HOH HOH . I 6 HOH A 14 1114 2094 HOH HOH . I 6 HOH A 15 1115 2044 HOH HOH . I 6 HOH A 16 1116 2017 HOH HOH . I 6 HOH A 17 1117 2055 HOH HOH . I 6 HOH A 18 1118 2036 HOH HOH . I 6 HOH A 19 1119 2099 HOH HOH . I 6 HOH A 20 1120 2077 HOH HOH . I 6 HOH A 21 1121 2069 HOH HOH . I 6 HOH A 22 1122 2020 HOH HOH . I 6 HOH A 23 1123 2008 HOH HOH . I 6 HOH A 24 1124 2001 HOH HOH . I 6 HOH A 25 1125 2010 HOH HOH . I 6 HOH A 26 1126 2007 HOH HOH . I 6 HOH A 27 1127 2018 HOH HOH . I 6 HOH A 28 1128 2030 HOH HOH . I 6 HOH A 29 1129 2015 HOH HOH . I 6 HOH A 30 1130 2027 HOH HOH . I 6 HOH A 31 1131 2019 HOH HOH . I 6 HOH A 32 1132 2049 HOH HOH . I 6 HOH A 33 1133 2029 HOH HOH . I 6 HOH A 34 1134 2012 HOH HOH . I 6 HOH A 35 1135 2009 HOH HOH . I 6 HOH A 36 1136 2102 HOH HOH . I 6 HOH A 37 1137 2006 HOH HOH . I 6 HOH A 38 1138 2040 HOH HOH . I 6 HOH A 39 1139 2023 HOH HOH . I 6 HOH A 40 1140 2041 HOH HOH . I 6 HOH A 41 1141 2048 HOH HOH . I 6 HOH A 42 1142 2002 HOH HOH . I 6 HOH A 43 1143 2050 HOH HOH . I 6 HOH A 44 1144 2038 HOH HOH . I 6 HOH A 45 1145 2004 HOH HOH . I 6 HOH A 46 1146 2070 HOH HOH . I 6 HOH A 47 1147 2051 HOH HOH . I 6 HOH A 48 1148 2063 HOH HOH . I 6 HOH A 49 1149 2021 HOH HOH . I 6 HOH A 50 1150 2016 HOH HOH . I 6 HOH A 51 1151 2092 HOH HOH . I 6 HOH A 52 1152 2042 HOH HOH . I 6 HOH A 53 1153 2053 HOH HOH . I 6 HOH A 54 1154 2062 HOH HOH . I 6 HOH A 55 1155 2066 HOH HOH . I 6 HOH A 56 1156 2064 HOH HOH . I 6 HOH A 57 1157 2003 HOH HOH . I 6 HOH A 58 1158 2058 HOH HOH . I 6 HOH A 59 1159 2022 HOH HOH . I 6 HOH A 60 1160 2065 HOH HOH . I 6 HOH A 61 1161 2090 HOH HOH . I 6 HOH A 62 1162 2059 HOH HOH . I 6 HOH A 63 1163 2072 HOH HOH . I 6 HOH A 64 1164 2091 HOH HOH . I 6 HOH A 65 1165 2101 HOH HOH . I 6 HOH A 66 1166 2075 HOH HOH . I 6 HOH A 67 1167 2014 HOH HOH . I 6 HOH A 68 1168 2095 HOH HOH . I 6 HOH A 69 1169 2054 HOH HOH . I 6 HOH A 70 1170 2088 HOH HOH . I 6 HOH A 71 1171 2052 HOH HOH . I 6 HOH A 72 1172 2033 HOH HOH . I 6 HOH A 73 1173 2057 HOH HOH . I 6 HOH A 74 1174 2025 HOH HOH . I 6 HOH A 75 1175 2045 HOH HOH . I 6 HOH A 76 1176 2046 HOH HOH . I 6 HOH A 77 1177 2026 HOH HOH . I 6 HOH A 78 1178 2082 HOH HOH . I 6 HOH A 79 1179 2074 HOH HOH . I 6 HOH A 80 1180 2039 HOH HOH . I 6 HOH A 81 1181 2078 HOH HOH . I 6 HOH A 82 1182 2067 HOH HOH . I 6 HOH A 83 1183 2043 HOH HOH . I 6 HOH A 84 1184 2034 HOH HOH . I 6 HOH A 85 1185 2089 HOH HOH . I 6 HOH A 86 1186 2073 HOH HOH . I 6 HOH A 87 1187 2068 HOH HOH . I 6 HOH A 88 1188 2083 HOH HOH . I 6 HOH A 89 1189 2037 HOH HOH . I 6 HOH A 90 1190 2028 HOH HOH . I 6 HOH A 91 1191 2080 HOH HOH . I 6 HOH A 92 1192 2047 HOH HOH . I 6 HOH A 93 1193 2035 HOH HOH . I 6 HOH A 94 1194 2100 HOH HOH . I 6 HOH A 95 1195 2061 HOH HOH . I 6 HOH A 96 1196 2098 HOH HOH . I 6 HOH A 97 1197 2097 HOH HOH . I 6 HOH A 98 1198 2093 HOH HOH . I 6 HOH A 99 1199 2096 HOH HOH . I 6 HOH A 100 1200 2031 HOH HOH . I 6 HOH A 101 1201 2056 HOH HOH . I 6 HOH A 102 1202 2032 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . H 5 -31.155 -85.066 -0.16 1 73.69 ? C1 MPD 1007 A 1 HETATM 2 C C2 MPD . . . H 5 -31.66 -83.752 0.484 1 88.3 ? C2 MPD 1007 A 1 HETATM 3 O O2 MPD . . . H 5 -30.865 -82.668 0.015 1 78.6 ? O2 MPD 1007 A 1 HETATM 4 C CM MPD . . . H 5 -33.147 -83.555 0.078 1 83.72 ? CM MPD 1007 A 1 HETATM 5 C C3 MPD . . . H 5 -31.541 -83.784 2.039 1 66.61 ? C3 MPD 1007 A 1 HETATM 6 C C4 MPD . . . H 5 -31.985 -82.421 2.546 1 75.55 ? C4 MPD 1007 A 1 HETATM 7 O O4 MPD . . . H 5 -33.279 -82.498 3.128 1 94.55 ? O4 MPD 1007 A 1 HETATM 8 C C5 MPD . . . H 5 -30.993 -81.933 3.557 1 63.1 ? C5 MPD 1007 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 409 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #