data_7BTA # _model_server_result.job_id cFc27cELuFl3TYyyDFp9Fg _model_server_result.datetime_utc '2024-10-18 16:25:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bta # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 7BTA # _exptl.entry_id 7BTA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.75 _cell.angle_gamma 90 _cell.entry_id 7BTA _cell.length_a 108.86 _cell.length_b 47.8 _cell.length_c 61.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BTA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 70 n n PB O2B GDP sing 71 n n PB O3B GDP sing 72 n n PB O3A GDP sing 73 n n O2B HOB2 GDP sing 74 n n O3B HOB3 GDP sing 75 n n O3A PA GDP sing 76 n n PA O1A GDP doub 77 n n PA O2A GDP sing 78 n n PA O5' GDP sing 79 n n O2A HOA2 GDP sing 80 n n O5' C5' GDP sing 81 n n C5' C4' GDP sing 82 n n C5' H5' GDP sing 83 n n C5' "H5''" GDP sing 84 n n C4' O4' GDP sing 85 n n C4' C3' GDP sing 86 n n C4' H4' GDP sing 87 n n O4' C1' GDP sing 88 n n C3' O3' GDP sing 89 n n C3' C2' GDP sing 90 n n C3' H3' GDP sing 91 n n O3' HO3' GDP sing 92 n n C2' O2' GDP sing 93 n n C2' C1' GDP sing 94 n n C2' H2' GDP sing 95 n n O2' HO2' GDP sing 96 n n C1' N9 GDP sing 97 n n C1' H1' GDP sing 98 n n N9 C8 GDP sing 99 n y N9 C4 GDP sing 100 n y C8 N7 GDP doub 101 n y C8 H8 GDP sing 102 n n N7 C5 GDP sing 103 n y C5 C6 GDP sing 104 n n C5 C4 GDP doub 105 n y C6 O6 GDP doub 106 n n C6 N1 GDP sing 107 n n N1 C2 GDP sing 108 n n N1 HN1 GDP sing 109 n n C2 N2 GDP sing 110 n n C2 N3 GDP doub 111 n n N2 HN21 GDP sing 112 n n N2 HN22 GDP sing 113 n n N3 C4 GDP sing 114 n n # _atom_sites.entry_id 7BTA _atom_sites.fract_transf_matrix[1][1] 0.009186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003851 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017756 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 201 2 GDP GDP . D 3 PO4 A 1 202 2 PO4 PO4 . E 2 GDP B 1 201 2 GDP GDP . F 3 PO4 B 1 202 1 PO4 PO4 . G 4 HOH A 1 301 1 HOH HOH . G 4 HOH A 2 302 7 HOH HOH . G 4 HOH A 3 303 3 HOH HOH . G 4 HOH A 4 304 4 HOH HOH . G 4 HOH A 5 305 6 HOH HOH . G 4 HOH A 6 306 12 HOH HOH . G 4 HOH A 7 307 8 HOH HOH . H 4 HOH B 1 301 2 HOH HOH . H 4 HOH B 2 302 11 HOH HOH . H 4 HOH B 3 303 5 HOH HOH . H 4 HOH B 4 304 9 HOH HOH . H 4 HOH B 5 305 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . E 2 105.86 -27.827 40.131 1 40.04 ? PB GDP 201 B 1 HETATM 2 O O1B GDP . . . E 2 105.158 -28.796 39.206 1 41.16 ? O1B GDP 201 B 1 HETATM 3 O O2B GDP . . . E 2 105.812 -26.419 39.546 1 58.01 ? O2B GDP 201 B 1 HETATM 4 O O3B GDP . . . E 2 105.162 -27.806 41.44 1 46.4 ? O3B GDP 201 B 1 HETATM 5 O O3A GDP . . . E 2 107.398 -28.249 40.271 1 39.27 ? O3A GDP 201 B 1 HETATM 6 P PA GDP . . . E 2 108.355 -28.642 39 1 43.31 ? PA GDP 201 B 1 HETATM 7 O O1A GDP . . . E 2 107.481 -28.6 37.785 1 56.66 ? O1A GDP 201 B 1 HETATM 8 O O2A GDP . . . E 2 109.018 -29.999 39.027 1 43.01 ? O2A GDP 201 B 1 HETATM 9 O O5' GDP . . . E 2 109.423 -27.435 39.025 1 49.88 ? O5' GDP 201 B 1 HETATM 10 C C5' GDP . . . E 2 110.722 -27.821 39.418 1 43.3 ? C5' GDP 201 B 1 HETATM 11 C C4' GDP . . . E 2 111.798 -27.004 38.752 1 37.72 ? C4' GDP 201 B 1 HETATM 12 O O4' GDP . . . E 2 112.872 -27.285 39.615 1 35.38 ? O4' GDP 201 B 1 HETATM 13 C C3' GDP . . . E 2 112.26 -27.585 37.434 1 50.86 ? C3' GDP 201 B 1 HETATM 14 O O3' GDP . . . E 2 113.212 -26.712 36.754 1 54.83 ? O3' GDP 201 B 1 HETATM 15 C C2' GDP . . . E 2 112.939 -28.868 37.874 1 46.43 ? C2' GDP 201 B 1 HETATM 16 O O2' GDP . . . E 2 113.881 -29.268 36.865 1 54.12 ? O2' GDP 201 B 1 HETATM 17 C C1' GDP . . . E 2 113.588 -28.446 39.193 1 35.36 ? C1' GDP 201 B 1 HETATM 18 N N9 GDP . . . E 2 113.524 -29.423 40.323 1 33.44 ? N9 GDP 201 B 1 HETATM 19 C C8 GDP . . . E 2 112.435 -30.067 40.813 1 32.5 ? C8 GDP 201 B 1 HETATM 20 N N7 GDP . . . E 2 112.735 -30.863 41.873 1 30.72 ? N7 GDP 201 B 1 HETATM 21 C C5 GDP . . . E 2 114.054 -30.725 42.096 1 32.12 ? C5 GDP 201 B 1 HETATM 22 C C6 GDP . . . E 2 115.045 -31.259 43.063 1 32.66 ? C6 GDP 201 B 1 HETATM 23 O O6 GDP . . . E 2 114.697 -32.07 43.945 1 42.86 ? O6 GDP 201 B 1 HETATM 24 N N1 GDP . . . E 2 116.318 -30.859 42.973 1 32.72 ? N1 GDP 201 B 1 HETATM 25 C C2 GDP . . . E 2 116.713 -29.985 42.029 1 32.76 ? C2 GDP 201 B 1 HETATM 26 N N2 GDP . . . E 2 118.012 -29.618 41.977 1 35.98 ? N2 GDP 201 B 1 HETATM 27 N N3 GDP . . . E 2 115.876 -29.449 41.108 1 31.92 ? N3 GDP 201 B 1 HETATM 28 C C4 GDP . . . E 2 114.559 -29.765 41.091 1 32.88 ? C4 GDP 201 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #