data_7BU6 # _model_server_result.job_id exvOUdgJMmWZY3POtG_uCQ _model_server_result.datetime_utc '2024-11-27 03:12:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1412}' # _entry.id 7BU6 # _exptl.entry_id 7BU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 218.29 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl octanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.458 _cell.angle_gamma 90 _cell.entry_id 7BU6 _cell.length_a 376.779 _cell.length_b 66.009 _cell.length_c 47.841 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C GLC 1 C 1 GLC B 402 MAL 3 n C GLC 2 C 2 GLC B 402 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 248 A CYS 1131 1_555 A SG CYS 333 A CYS 1216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 326 A CYS 1209 1_555 A SG CYS 332 A CYS 1215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 sing metalc ? metalc1 A O CYS 326 A CYS 1209 1_555 L NA NA . A NA 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc2 A O ASP 329 A ASP 1212 1_555 L NA NA . A NA 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc3 A O CYS 332 A CYS 1215 1_555 L NA NA . A NA 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc4 L NA NA . A NA 1410 1_555 Q O HOH . A HOH 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc5 L NA NA . A NA 1410 1_555 Q O HOH . A HOH 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc6 L NA NA . A NA 1410 1_555 Q O HOH . A HOH 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? # _chem_comp.formula 'C11 H22 O4' _chem_comp.formula_weight 218.29 _chem_comp.id 480 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl octanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C7 480 sing 1 n n C6 C5 480 sing 2 n n C7 C8 480 sing 3 n n C5 C4 480 sing 4 n n C4 C3 480 sing 5 n n C3 C2 480 sing 6 n n C2 C1 480 sing 7 n n O19 C1 480 doub 8 n n C1 O20 480 sing 9 n n O20 C21 480 sing 10 n n C21 C22 480 sing 11 n n C24 C22 480 sing 12 n n C24 O25 480 sing 13 n n C22 O23 480 sing 14 n n C8 H1 480 sing 15 n n C8 H2 480 sing 16 n n C8 H3 480 sing 17 n n C24 H4 480 sing 18 n n C24 H5 480 sing 19 n n C7 H6 480 sing 20 n n C7 H7 480 sing 21 n n C6 H8 480 sing 22 n n C6 H9 480 sing 23 n n C5 H10 480 sing 24 n n C5 H11 480 sing 25 n n C4 H12 480 sing 26 n n C4 H13 480 sing 27 n n C3 H14 480 sing 28 n n C3 H15 480 sing 29 n n C2 H16 480 sing 30 n n C2 H17 480 sing 31 n n C21 H18 480 sing 32 n n C21 H19 480 sing 33 n n C22 H20 480 sing 34 n n O25 H21 480 sing 35 n n O23 H22 480 sing 36 n n # _atom_sites.entry_id 7BU6 _atom_sites.fract_transf_matrix[1][1] 0.002654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00016 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 E5E A 1 1402 1 E5E DRG . E 5 SO4 A 1 1403 1 SO4 SO4 . F 5 SO4 A 1 1404 3 SO4 SO4 . G 5 SO4 A 1 1405 4 SO4 SO4 . H 5 SO4 A 1 1406 6 SO4 SO4 . I 5 SO4 A 1 1407 7 SO4 SO4 . J 5 SO4 A 1 1408 8 SO4 SO4 . K 5 SO4 A 1 1409 9 SO4 SO4 . L 6 NA A 1 1410 1 NA NA . M 7 EPE A 1 1411 1 EPE EPE . N 8 480 A 1 1412 1403 480 1WV . O 9 CLR A 1 1413 413 CLR CLR . P 10 PG4 A 1 1414 3 PG4 PG4 . Q 11 HOH A 1 1501 3 HOH HOH . Q 11 HOH A 2 1502 2 HOH HOH . Q 11 HOH A 3 1503 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 480 . . . N 8 -58.776 17.314 -6.236 1 51.07 ? C8 480 1412 A 1 HETATM 2 C C24 480 . . . N 8 -70.348 16.957 -2.381 1 76.94 ? C24 480 1412 A 1 HETATM 3 C C7 480 . . . N 8 -60.015 16.428 -6.113 1 69.03 ? C7 480 1412 A 1 HETATM 4 C C6 480 . . . N 8 -61.305 17.246 -6.128 1 65.81 ? C6 480 1412 A 1 HETATM 5 C C5 480 . . . N 8 -62.57 16.419 -5.893 1 68.58 ? C5 480 1412 A 1 HETATM 6 C C4 480 . . . N 8 -63.704 17.265 -5.311 1 67.12 ? C4 480 1412 A 1 HETATM 7 C C3 480 . . . N 8 -65.097 16.665 -5.502 1 61.05 ? C3 480 1412 A 1 HETATM 8 C C2 480 . . . N 8 -66.191 17.549 -4.901 1 67.69 ? C2 480 1412 A 1 HETATM 9 C C21 480 . . . N 8 -69.5 18.109 -4.426 1 76.7 ? C21 480 1412 A 1 HETATM 10 C C1 480 . . . N 8 -67.554 17.397 -5.582 1 75.9 ? C1 480 1412 A 1 HETATM 11 C C22 480 . . . N 8 -70.728 17.484 -3.766 1 80.55 ? C22 480 1412 A 1 HETATM 12 O O19 480 . . . N 8 -67.903 18.585 -6.238 1 74.18 ? O19 480 1412 A 1 HETATM 13 O O25 480 . . . N 8 -71.156 17.579 -1.421 1 69.67 ? O25 480 1412 A 1 HETATM 14 O O23 480 . . . N 8 -71.188 16.431 -4.568 1 76.16 ? O23 480 1412 A 1 HETATM 15 O O20 480 . . . N 8 -68.533 17.11 -4.621 1 77.93 ? O20 480 1412 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 15 #