data_7BU6 # _model_server_result.job_id t5juQbw9vgOv9gYTn9jdMA _model_server_result.datetime_utc '2024-11-23 10:46:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1413}' # _entry.id 7BU6 # _exptl.entry_id 7BU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 9 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.458 _cell.angle_gamma 90 _cell.entry_id 7BU6 _cell.length_a 376.779 _cell.length_b 66.009 _cell.length_c 47.841 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C GLC 1 C 1 GLC B 402 MAL 3 n C GLC 2 C 2 GLC B 402 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 248 A CYS 1131 1_555 A SG CYS 333 A CYS 1216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 326 A CYS 1209 1_555 A SG CYS 332 A CYS 1215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 sing metalc ? metalc1 A O CYS 326 A CYS 1209 1_555 L NA NA . A NA 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc2 A O ASP 329 A ASP 1212 1_555 L NA NA . A NA 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc3 A O CYS 332 A CYS 1215 1_555 L NA NA . A NA 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc4 L NA NA . A NA 1410 1_555 Q O HOH . A HOH 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc5 L NA NA . A NA 1410 1_555 Q O HOH . A HOH 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc6 L NA NA . A NA 1410 1_555 Q O HOH . A HOH 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 106 n n C1 C10 CLR sing 107 n n C1 H11 CLR sing 108 n n C1 H12 CLR sing 109 n n C2 C3 CLR sing 110 n n C2 H21 CLR sing 111 n n C2 H22 CLR sing 112 n n C3 C4 CLR sing 113 n n C3 O1 CLR sing 114 n n C3 H3 CLR sing 115 n n C4 C5 CLR sing 116 n n C4 H41 CLR sing 117 n n C4 H42 CLR sing 118 n n C5 C6 CLR doub 119 n n C5 C10 CLR sing 120 n n C6 C7 CLR sing 121 n n C6 H6 CLR sing 122 n n C7 C8 CLR sing 123 n n C7 H71 CLR sing 124 n n C7 H72 CLR sing 125 n n C8 C9 CLR sing 126 n n C8 C14 CLR sing 127 n n C8 H8 CLR sing 128 n n C9 C10 CLR sing 129 n n C9 C11 CLR sing 130 n n C9 H9 CLR sing 131 n n C10 C19 CLR sing 132 n n C11 C12 CLR sing 133 n n C11 H111 CLR sing 134 n n C11 H112 CLR sing 135 n n C12 C13 CLR sing 136 n n C12 H121 CLR sing 137 n n C12 H122 CLR sing 138 n n C13 C14 CLR sing 139 n n C13 C17 CLR sing 140 n n C13 C18 CLR sing 141 n n C14 C15 CLR sing 142 n n C14 H14 CLR sing 143 n n C15 C16 CLR sing 144 n n C15 H151 CLR sing 145 n n C15 H152 CLR sing 146 n n C16 C17 CLR sing 147 n n C16 H161 CLR sing 148 n n C16 H162 CLR sing 149 n n C17 C20 CLR sing 150 n n C17 H17 CLR sing 151 n n C18 H181 CLR sing 152 n n C18 H182 CLR sing 153 n n C18 H183 CLR sing 154 n n C19 H191 CLR sing 155 n n C19 H192 CLR sing 156 n n C19 H193 CLR sing 157 n n C20 C21 CLR sing 158 n n C20 C22 CLR sing 159 n n C20 H20 CLR sing 160 n n C21 H211 CLR sing 161 n n C21 H212 CLR sing 162 n n C21 H213 CLR sing 163 n n C22 C23 CLR sing 164 n n C22 H221 CLR sing 165 n n C22 H222 CLR sing 166 n n C23 C24 CLR sing 167 n n C23 H231 CLR sing 168 n n C23 H232 CLR sing 169 n n C24 C25 CLR sing 170 n n C24 H241 CLR sing 171 n n C24 H242 CLR sing 172 n n C25 C26 CLR sing 173 n n C25 C27 CLR sing 174 n n C25 H25 CLR sing 175 n n C26 H261 CLR sing 176 n n C26 H262 CLR sing 177 n n C26 H263 CLR sing 178 n n C27 H271 CLR sing 179 n n C27 H272 CLR sing 180 n n C27 H273 CLR sing 181 n n O1 H1 CLR sing 182 n n # _atom_sites.entry_id 7BU6 _atom_sites.fract_transf_matrix[1][1] 0.002654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00016 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020941 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 E5E A 1 1402 1 E5E DRG . E 5 SO4 A 1 1403 1 SO4 SO4 . F 5 SO4 A 1 1404 3 SO4 SO4 . G 5 SO4 A 1 1405 4 SO4 SO4 . H 5 SO4 A 1 1406 6 SO4 SO4 . I 5 SO4 A 1 1407 7 SO4 SO4 . J 5 SO4 A 1 1408 8 SO4 SO4 . K 5 SO4 A 1 1409 9 SO4 SO4 . L 6 NA A 1 1410 1 NA NA . M 7 EPE A 1 1411 1 EPE EPE . N 8 480 A 1 1412 1403 480 1WV . O 9 CLR A 1 1413 413 CLR CLR . P 10 PG4 A 1 1414 3 PG4 PG4 . Q 11 HOH A 1 1501 3 HOH HOH . Q 11 HOH A 2 1502 2 HOH HOH . Q 11 HOH A 3 1503 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . O 9 -67.704 42.05 1.677 1 85.66 ? C1 CLR 1413 A 1 HETATM 2 C C2 CLR . . . O 9 -69.183 42.4 1.654 1 85.88 ? C2 CLR 1413 A 1 HETATM 3 C C3 CLR . . . O 9 -69.54 43.057 0.309 1 92.13 ? C3 CLR 1413 A 1 HETATM 4 C C4 CLR . . . O 9 -69.296 42.083 -0.85 1 86.96 ? C4 CLR 1413 A 1 HETATM 5 C C5 CLR . . . O 9 -67.808 41.819 -0.847 1 90.11 ? C5 CLR 1413 A 1 HETATM 6 C C6 CLR . . . O 9 -67.104 42.068 -1.978 1 93.3 ? C6 CLR 1413 A 1 HETATM 7 C C7 CLR . . . O 9 -65.619 41.855 -2.101 1 91.14 ? C7 CLR 1413 A 1 HETATM 8 C C8 CLR . . . O 9 -65.06 41.011 -0.972 1 89.59 ? C8 CLR 1413 A 1 HETATM 9 C C9 CLR . . . O 9 -65.642 41.403 0.39 1 89.7 ? C9 CLR 1413 A 1 HETATM 10 C C10 CLR . . . O 9 -67.185 41.288 0.44 1 88.48 ? C10 CLR 1413 A 1 HETATM 11 C C11 CLR . . . O 9 -64.942 40.64 1.544 1 83.22 ? C11 CLR 1413 A 1 HETATM 12 C C12 CLR . . . O 9 -63.418 40.749 1.492 1 82.67 ? C12 CLR 1413 A 1 HETATM 13 C C13 CLR . . . O 9 -62.862 40.322 0.147 1 86.98 ? C13 CLR 1413 A 1 HETATM 14 C C14 CLR . . . O 9 -63.537 41.185 -0.903 1 88.81 ? C14 CLR 1413 A 1 HETATM 15 C C15 CLR . . . O 9 -62.747 40.922 -2.171 1 90.65 ? C15 CLR 1413 A 1 HETATM 16 C C16 CLR . . . O 9 -61.321 40.782 -1.635 1 87.74 ? C16 CLR 1413 A 1 HETATM 17 C C17 CLR . . . O 9 -61.397 40.618 -0.098 1 87.87 ? C17 CLR 1413 A 1 HETATM 18 C C18 CLR . . . O 9 -63.123 38.83 -0.124 1 80.93 ? C18 CLR 1413 A 1 HETATM 19 C C19 CLR . . . O 9 -67.65 39.835 0.532 1 83.3 ? C19 CLR 1413 A 1 HETATM 20 C C20 CLR . . . O 9 -60.332 39.621 0.433 1 79.55 ? C20 CLR 1413 A 1 HETATM 21 C C21 CLR . . . O 9 -60.56 39.076 1.84 1 75.16 ? C21 CLR 1413 A 1 HETATM 22 C C22 CLR . . . O 9 -58.95 40.285 0.407 1 80.54 ? C22 CLR 1413 A 1 HETATM 23 C C23 CLR . . . O 9 -57.845 39.343 -0.068 1 76.02 ? C23 CLR 1413 A 1 HETATM 24 C C24 CLR . . . O 9 -56.552 40.124 -0.309 1 77.17 ? C24 CLR 1413 A 1 HETATM 25 C C25 CLR . . . O 9 -55.343 39.47 0.334 1 75.57 ? C25 CLR 1413 A 1 HETATM 26 C C26 CLR . . . O 9 -54.062 39.959 -0.332 1 79.76 ? C26 CLR 1413 A 1 HETATM 27 C C27 CLR . . . O 9 -55.326 39.738 1.835 1 75.42 ? C27 CLR 1413 A 1 HETATM 28 O O1 CLR . . . O 9 -70.857 43.617 0.192 1 93.25 ? O1 CLR 1413 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 28 #