data_7BU7 # _model_server_result.job_id wX6QbFTnKBcI2zuUfufI1g _model_server_result.datetime_utc '2025-02-26 15:23:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bu7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1412}' # _entry.id 7BU7 # _exptl.entry_id 7BU7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.883 _cell.angle_gamma 90 _cell.entry_id 7BU7 _cell.length_a 377.98 _cell.length_b 66.22 _cell.length_c 47.86 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BU7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C GLC 1 C 1 GLC B 401 MAL 3 n C GLC 2 C 2 GLC B 401 MAL 3 n D GLC 1 D 1 GLC B 402 MAL 3 n D GLC 2 D 2 GLC B 402 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 248 A CYS 1131 1_555 A SG CYS 333 A CYS 1216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 326 A CYS 1209 1_555 A SG CYS 332 A CYS 1215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 sing covale ? covale2 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 sing metalc ? metalc1 A O CYS 326 A CYS 1209 1_555 M NA NA . A NA 1411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc2 A O ASP 329 A ASP 1212 1_555 M NA NA . A NA 1411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc3 A O CYS 332 A CYS 1215 1_555 M NA NA . A NA 1411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 212 n n N1 C6 EPE sing 213 n n N1 C9 EPE sing 214 n n C2 C3 EPE sing 215 n n C2 H21 EPE sing 216 n n C2 H22 EPE sing 217 n n C3 N4 EPE sing 218 n n C3 H31 EPE sing 219 n n C3 H32 EPE sing 220 n n N4 C5 EPE sing 221 n n N4 C7 EPE sing 222 n n C5 C6 EPE sing 223 n n C5 H51 EPE sing 224 n n C5 H52 EPE sing 225 n n C6 H61 EPE sing 226 n n C6 H62 EPE sing 227 n n C7 C8 EPE sing 228 n n C7 H71 EPE sing 229 n n C7 H72 EPE sing 230 n n C8 O8 EPE sing 231 n n C8 H81 EPE sing 232 n n C8 H82 EPE sing 233 n n O8 HO8 EPE sing 234 n n C9 C10 EPE sing 235 n n C9 H91 EPE sing 236 n n C9 H92 EPE sing 237 n n C10 S EPE sing 238 n n C10 H101 EPE sing 239 n n C10 H102 EPE sing 240 n n S O1S EPE doub 241 n n S O2S EPE doub 242 n n S O3S EPE sing 243 n n O3S HOS3 EPE sing 244 n n # _atom_sites.entry_id 7BU7 _atom_sites.fract_transf_matrix[1][1] 0.002646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00018 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020942 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 SO4 A 1 1403 1 SO4 SO4 . F 4 SO4 A 1 1404 2 SO4 SO4 . G 4 SO4 A 1 1405 3 SO4 SO4 . H 4 SO4 A 1 1406 4 SO4 SO4 . I 4 SO4 A 1 1407 5 SO4 SO4 . J 4 SO4 A 1 1408 8 SO4 SO4 . K 5 CLR A 1 1409 413 CLR CLR . L 6 1WV A 1 1410 1404 1WV 1WV . M 7 NA A 1 1411 1 NA NA . N 8 EPE A 1 1412 1 EPE EPE . O 9 P0G A 1 1413 1401 P0G P0G . P 10 P6G A 1 1414 2002 P6G P6G . Q 11 HOH A 1 1501 39 HOH HOH . Q 11 HOH A 2 1502 20 HOH HOH . Q 11 HOH A 3 1503 5 HOH HOH . Q 11 HOH A 4 1504 28 HOH HOH . Q 11 HOH A 5 1505 6 HOH HOH . Q 11 HOH A 6 1506 9 HOH HOH . Q 11 HOH A 7 1507 3 HOH HOH . Q 11 HOH A 8 1508 16 HOH HOH . Q 11 HOH A 9 1509 4 HOH HOH . Q 11 HOH A 10 1510 11 HOH HOH . Q 11 HOH A 11 1511 1 HOH HOH . Q 11 HOH A 12 1512 22 HOH HOH . Q 11 HOH A 13 1513 17 HOH HOH . Q 11 HOH A 14 1514 18 HOH HOH . Q 11 HOH A 15 1515 23 HOH HOH . Q 11 HOH A 16 1516 2 HOH HOH . Q 11 HOH A 17 1517 37 HOH HOH . Q 11 HOH A 18 1518 8 HOH HOH . Q 11 HOH A 19 1519 15 HOH HOH . Q 11 HOH A 20 1520 35 HOH HOH . Q 11 HOH A 21 1521 13 HOH HOH . Q 11 HOH A 22 1522 12 HOH HOH . Q 11 HOH A 23 1523 24 HOH HOH . Q 11 HOH A 24 1524 36 HOH HOH . Q 11 HOH A 25 1525 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . N 8 -75.244 11.889 -5.591 1 101.09 ? N1 EPE 1412 A 1 HETATM 2 C C2 EPE . . . N 8 -74.549 10.78 -4.951 1 87.06 ? C2 EPE 1412 A 1 HETATM 3 C C3 EPE . . . N 8 -75.66 9.983 -4.299 1 73.25 ? C3 EPE 1412 A 1 HETATM 4 N N4 EPE . . . N 8 -76.36 10.817 -3.319 1 82.38 ? N4 EPE 1412 A 1 HETATM 5 C C5 EPE . . . N 8 -76.846 12.089 -3.889 1 83.27 ? C5 EPE 1412 A 1 HETATM 6 C C6 EPE . . . N 8 -75.682 12.825 -4.553 1 90.57 ? C6 EPE 1412 A 1 HETATM 7 C C7 EPE . . . N 8 -77.459 10.022 -2.788 1 71.79 ? C7 EPE 1412 A 1 HETATM 8 C C8 EPE . . . N 8 -78.02 10.608 -1.523 1 63.17 ? C8 EPE 1412 A 1 HETATM 9 O O8 EPE . . . N 8 -78.647 11.832 -1.802 1 67.22 ? O8 EPE 1412 A 1 HETATM 10 C C9 EPE . . . N 8 -74.514 12.468 -6.72 1 95.03 ? C9 EPE 1412 A 1 HETATM 11 C C10 EPE . . . N 8 -74.962 11.678 -7.943 1 95.93 ? C10 EPE 1412 A 1 HETATM 12 S S EPE . . . N 8 -74.898 12.623 -9.295 1 125 ? S EPE 1412 A 1 HETATM 13 O O1S EPE . . . N 8 -76.174 13.289 -9.508 1 116.78 ? O1S EPE 1412 A 1 HETATM 14 O O2S EPE . . . N 8 -74.642 11.862 -10.507 1 106.61 ? O2S EPE 1412 A 1 HETATM 15 O O3S EPE . . . N 8 -73.859 13.632 -9.141 1 108.94 ? O3S EPE 1412 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #