data_7BUJ # _model_server_result.job_id ITkQOtAGsNF_vNrttvXtzQ _model_server_result.datetime_utc '2024-11-08 09:08:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7buj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 7BUJ # _exptl.entry_id 7BUJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.52 _cell.angle_gamma 90 _cell.entry_id 7BUJ _cell.length_a 47.798 _cell.length_b 109.632 _cell.length_c 75.501 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BUJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D O2' GTP . A GTP 602 1_555 G P 5GP . A 5GP 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.557 ? covale ? covale2 I O2' GTP . B GTP 602 1_555 L P 5GP . B 5GP 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.559 ? metalc ? metalc1 A NE2 HIS 318 A HIS 378 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc2 A SG CYS 324 A CYS 384 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc3 A SG CYS 325 A CYS 385 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc4 A SG CYS 332 A CYS 392 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc5 D O1G GTP . A GTP 602 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc6 D O2B GTP . A GTP 602 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc7 D O2A GTP . A GTP 602 1_555 E MN MN . A MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc8 D PB GTP . A GTP 602 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc9 D O1B GTP . A GTP 602 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc10 D O2B GTP . A GTP 602 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc11 D O3A GTP . A GTP 602 1_555 F MN MN . A MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc12 B NE2 HIS 318 B HIS 378 1_555 H ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc13 B SG CYS 324 B CYS 384 1_555 H ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc14 B SG CYS 325 B CYS 385 1_555 H ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc15 B SG CYS 332 B CYS 392 1_555 H ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc16 I O1G GTP . B GTP 602 1_555 J MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc17 I O2B GTP . B GTP 602 1_555 J MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc18 I O2A GTP . B GTP 602 1_555 J MN MN . B MN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc19 I O2B GTP . B GTP 602 1_555 K MN MN . B MN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7BUJ _atom_sites.fract_transf_matrix[1][1] 0.020921 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001287 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 601 ZN ZN . D 3 GTP A 1 602 701 GTP GTP . E 4 MN A 1 603 901 MN MN . F 4 MN A 1 604 902 MN MN . G 5 5GP A 1 605 1001 5GP GMP . H 2 ZN B 1 601 601 ZN ZN . I 3 GTP B 1 602 701 GTP GTP . J 4 MN B 1 603 901 MN MN . K 4 MN B 1 604 902 MN MN . L 5 5GP B 1 605 1001 5GP GMP . M 6 HOH A 1 701 125 HOH HOH . M 6 HOH A 2 702 118 HOH HOH . M 6 HOH A 3 703 112 HOH HOH . M 6 HOH A 4 704 138 HOH HOH . M 6 HOH A 5 705 82 HOH HOH . M 6 HOH A 6 706 140 HOH HOH . M 6 HOH A 7 707 116 HOH HOH . M 6 HOH A 8 708 194 HOH HOH . M 6 HOH A 9 709 47 HOH HOH . M 6 HOH A 10 710 192 HOH HOH . M 6 HOH A 11 711 28 HOH HOH . M 6 HOH A 12 712 163 HOH HOH . M 6 HOH A 13 713 183 HOH HOH . M 6 HOH A 14 714 91 HOH HOH . M 6 HOH A 15 715 23 HOH HOH . M 6 HOH A 16 716 2 HOH HOH . M 6 HOH A 17 717 129 HOH HOH . M 6 HOH A 18 718 69 HOH HOH . M 6 HOH A 19 719 50 HOH HOH . M 6 HOH A 20 720 18 HOH HOH . M 6 HOH A 21 721 35 HOH HOH . M 6 HOH A 22 722 31 HOH HOH . M 6 HOH A 23 723 7 HOH HOH . M 6 HOH A 24 724 180 HOH HOH . M 6 HOH A 25 725 49 HOH HOH . M 6 HOH A 26 726 13 HOH HOH . M 6 HOH A 27 727 158 HOH HOH . M 6 HOH A 28 728 14 HOH HOH . M 6 HOH A 29 729 166 HOH HOH . M 6 HOH A 30 730 97 HOH HOH . M 6 HOH A 31 731 36 HOH HOH . M 6 HOH A 32 732 26 HOH HOH . M 6 HOH A 33 733 113 HOH HOH . M 6 HOH A 34 734 152 HOH HOH . M 6 HOH A 35 735 48 HOH HOH . M 6 HOH A 36 736 55 HOH HOH . M 6 HOH A 37 737 127 HOH HOH . M 6 HOH A 38 738 160 HOH HOH . M 6 HOH A 39 739 4 HOH HOH . M 6 HOH A 40 740 122 HOH HOH . M 6 HOH A 41 741 89 HOH HOH . M 6 HOH A 42 742 6 HOH HOH . M 6 HOH A 43 743 90 HOH HOH . M 6 HOH A 44 744 8 HOH HOH . M 6 HOH A 45 745 66 HOH HOH . M 6 HOH A 46 746 38 HOH HOH . M 6 HOH A 47 747 172 HOH HOH . M 6 HOH A 48 748 85 HOH HOH . M 6 HOH A 49 749 178 HOH HOH . M 6 HOH A 50 750 146 HOH HOH . M 6 HOH A 51 751 111 HOH HOH . M 6 HOH A 52 752 156 HOH HOH . M 6 HOH A 53 753 176 HOH HOH . M 6 HOH A 54 754 33 HOH HOH . M 6 HOH A 55 755 153 HOH HOH . M 6 HOH A 56 756 155 HOH HOH . M 6 HOH A 57 757 43 HOH HOH . M 6 HOH A 58 758 150 HOH HOH . M 6 HOH A 59 759 37 HOH HOH . M 6 HOH A 60 760 5 HOH HOH . M 6 HOH A 61 761 159 HOH HOH . M 6 HOH A 62 762 181 HOH HOH . M 6 HOH A 63 763 154 HOH HOH . M 6 HOH A 64 764 61 HOH HOH . M 6 HOH A 65 765 173 HOH HOH . M 6 HOH A 66 766 51 HOH HOH . M 6 HOH A 67 767 84 HOH HOH . M 6 HOH A 68 768 16 HOH HOH . M 6 HOH A 69 769 54 HOH HOH . M 6 HOH A 70 770 32 HOH HOH . M 6 HOH A 71 771 189 HOH HOH . M 6 HOH A 72 772 78 HOH HOH . M 6 HOH A 73 773 135 HOH HOH . M 6 HOH A 74 774 168 HOH HOH . M 6 HOH A 75 775 134 HOH HOH . M 6 HOH A 76 776 17 HOH HOH . M 6 HOH A 77 777 88 HOH HOH . M 6 HOH A 78 778 179 HOH HOH . M 6 HOH A 79 779 77 HOH HOH . M 6 HOH A 80 780 20 HOH HOH . M 6 HOH A 81 781 161 HOH HOH . M 6 HOH A 82 782 59 HOH HOH . M 6 HOH A 83 783 188 HOH HOH . M 6 HOH A 84 784 64 HOH HOH . M 6 HOH A 85 785 193 HOH HOH . M 6 HOH A 86 786 21 HOH HOH . M 6 HOH A 87 787 60 HOH HOH . M 6 HOH A 88 788 139 HOH HOH . M 6 HOH A 89 789 94 HOH HOH . M 6 HOH A 90 790 148 HOH HOH . M 6 HOH A 91 791 115 HOH HOH . N 6 HOH B 1 701 124 HOH HOH . N 6 HOH B 2 702 25 HOH HOH . N 6 HOH B 3 703 141 HOH HOH . N 6 HOH B 4 704 39 HOH HOH . N 6 HOH B 5 705 131 HOH HOH . N 6 HOH B 6 706 195 HOH HOH . N 6 HOH B 7 707 117 HOH HOH . N 6 HOH B 8 708 68 HOH HOH . N 6 HOH B 9 709 109 HOH HOH . N 6 HOH B 10 710 67 HOH HOH . N 6 HOH B 11 711 76 HOH HOH . N 6 HOH B 12 712 52 HOH HOH . N 6 HOH B 13 713 57 HOH HOH . N 6 HOH B 14 714 157 HOH HOH . N 6 HOH B 15 715 136 HOH HOH . N 6 HOH B 16 716 81 HOH HOH . N 6 HOH B 17 717 110 HOH HOH . N 6 HOH B 18 718 12 HOH HOH . N 6 HOH B 19 719 1 HOH HOH . N 6 HOH B 20 720 144 HOH HOH . N 6 HOH B 21 721 58 HOH HOH . N 6 HOH B 22 722 119 HOH HOH . N 6 HOH B 23 723 19 HOH HOH . N 6 HOH B 24 724 114 HOH HOH . N 6 HOH B 25 725 15 HOH HOH . N 6 HOH B 26 726 162 HOH HOH . N 6 HOH B 27 727 30 HOH HOH . N 6 HOH B 28 728 165 HOH HOH . N 6 HOH B 29 729 24 HOH HOH . N 6 HOH B 30 730 164 HOH HOH . N 6 HOH B 31 731 22 HOH HOH . N 6 HOH B 32 732 71 HOH HOH . N 6 HOH B 33 733 86 HOH HOH . N 6 HOH B 34 734 174 HOH HOH . N 6 HOH B 35 735 121 HOH HOH . N 6 HOH B 36 736 149 HOH HOH . N 6 HOH B 37 737 45 HOH HOH . N 6 HOH B 38 738 184 HOH HOH . N 6 HOH B 39 739 120 HOH HOH . N 6 HOH B 40 740 170 HOH HOH . N 6 HOH B 41 741 87 HOH HOH . N 6 HOH B 42 742 93 HOH HOH . N 6 HOH B 43 743 123 HOH HOH . N 6 HOH B 44 744 40 HOH HOH . N 6 HOH B 45 745 186 HOH HOH . N 6 HOH B 46 746 11 HOH HOH . N 6 HOH B 47 747 102 HOH HOH . N 6 HOH B 48 748 34 HOH HOH . N 6 HOH B 49 749 62 HOH HOH . N 6 HOH B 50 750 44 HOH HOH . N 6 HOH B 51 751 3 HOH HOH . N 6 HOH B 52 752 190 HOH HOH . N 6 HOH B 53 753 171 HOH HOH . N 6 HOH B 54 754 167 HOH HOH . N 6 HOH B 55 755 46 HOH HOH . N 6 HOH B 56 756 128 HOH HOH . N 6 HOH B 57 757 63 HOH HOH . N 6 HOH B 58 758 92 HOH HOH . N 6 HOH B 59 759 169 HOH HOH . N 6 HOH B 60 760 99 HOH HOH . N 6 HOH B 61 761 151 HOH HOH . N 6 HOH B 62 762 187 HOH HOH . N 6 HOH B 63 763 53 HOH HOH . N 6 HOH B 64 764 105 HOH HOH . N 6 HOH B 65 765 185 HOH HOH . N 6 HOH B 66 766 177 HOH HOH . N 6 HOH B 67 767 75 HOH HOH . N 6 HOH B 68 768 175 HOH HOH . N 6 HOH B 69 769 27 HOH HOH . N 6 HOH B 70 770 65 HOH HOH . N 6 HOH B 71 771 126 HOH HOH . N 6 HOH B 72 772 101 HOH HOH . N 6 HOH B 73 773 96 HOH HOH . N 6 HOH B 74 774 70 HOH HOH . N 6 HOH B 75 775 182 HOH HOH . N 6 HOH B 76 776 80 HOH HOH . N 6 HOH B 77 777 42 HOH HOH . N 6 HOH B 78 778 73 HOH HOH . N 6 HOH B 79 779 95 HOH HOH . N 6 HOH B 80 780 106 HOH HOH . N 6 HOH B 81 781 132 HOH HOH . N 6 HOH B 82 782 98 HOH HOH . N 6 HOH B 83 783 143 HOH HOH . N 6 HOH B 84 784 142 HOH HOH . N 6 HOH B 85 785 137 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 4.324 _atom_site.Cartn_y 18.26 _atom_site.Cartn_z -36.135 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 105.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 604 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #