data_7BUM # _model_server_result.job_id 8ERP7PtL5uqOPocN6z-v9g _model_server_result.datetime_utc '2024-11-24 16:46:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 7BUM # _exptl.entry_id 7BUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.93 _cell.angle_gamma 90 _cell.entry_id 7BUM _cell.length_a 48.337 _cell.length_b 109.592 _cell.length_c 75.87 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D P AMP . A AMP 602 1_555 E O2' 5GP . A 5GP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.558 ? covale ? covale2 G P AMP . B AMP 602 1_555 H O2' 5GP . B 5GP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.562 ? metalc ? metalc1 A NE2 HIS 378 A HIS 378 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc2 A SG CYS 384 A CYS 384 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc3 A SG CYS 385 A CYS 385 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc4 A SG CYS 392 A CYS 392 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc5 B NE2 HIS 378 B HIS 378 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc6 B SG CYS 384 B CYS 384 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc7 B SG CYS 385 B CYS 385 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc8 B SG CYS 392 B CYS 392 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7BUM _atom_sites.fract_transf_matrix[1][1] 0.020688 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001422 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 601 ZN ZN . D 3 AMP A 1 602 701 AMP LIG . E 4 5GP A 1 603 801 5GP GMP . F 2 ZN B 1 601 601 ZN ZN . G 3 AMP B 1 602 701 AMP LIG . H 4 5GP B 1 603 801 5GP GMP . I 5 HOH A 1 701 31 HOH HOH . I 5 HOH A 2 702 23 HOH HOH . I 5 HOH A 3 703 17 HOH HOH . I 5 HOH A 4 704 6 HOH HOH . I 5 HOH A 5 705 36 HOH HOH . I 5 HOH A 6 706 16 HOH HOH . I 5 HOH A 7 707 33 HOH HOH . I 5 HOH A 8 708 2 HOH HOH . I 5 HOH A 9 709 15 HOH HOH . I 5 HOH A 10 710 1 HOH HOH . I 5 HOH A 11 711 27 HOH HOH . I 5 HOH A 12 712 12 HOH HOH . I 5 HOH A 13 713 26 HOH HOH . I 5 HOH A 14 714 41 HOH HOH . I 5 HOH A 15 715 4 HOH HOH . I 5 HOH A 16 716 3 HOH HOH . I 5 HOH A 17 717 24 HOH HOH . I 5 HOH A 18 718 43 HOH HOH . I 5 HOH A 19 719 34 HOH HOH . I 5 HOH A 20 720 13 HOH HOH . I 5 HOH A 21 721 11 HOH HOH . J 5 HOH B 1 701 7 HOH HOH . J 5 HOH B 2 702 22 HOH HOH . J 5 HOH B 3 703 20 HOH HOH . J 5 HOH B 4 704 21 HOH HOH . J 5 HOH B 5 705 38 HOH HOH . J 5 HOH B 6 706 9 HOH HOH . J 5 HOH B 7 707 10 HOH HOH . J 5 HOH B 8 708 39 HOH HOH . J 5 HOH B 9 709 8 HOH HOH . J 5 HOH B 10 710 18 HOH HOH . J 5 HOH B 11 711 30 HOH HOH . J 5 HOH B 12 712 32 HOH HOH . J 5 HOH B 13 713 25 HOH HOH . J 5 HOH B 14 714 19 HOH HOH . J 5 HOH B 15 715 37 HOH HOH . J 5 HOH B 16 716 5 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 23.19 _atom_site.Cartn_y -12.593 _atom_site.Cartn_z -22.799 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 601 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #