data_7BUQ
#
_model_server_result.job_id            quyXGQxV-jfQlcWXxzso_Q 
_model_server_result.datetime_utc      '2024-10-19 22:21:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7buq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    7BUQ 
#
_exptl.entry_id    7BUQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              674.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            cGAMP 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.13 
_cell.angle_gamma         90 
_cell.entry_id            7BUQ 
_cell.length_a            47.645 
_cell.length_b            109.812 
_cell.length_c            75.637 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BUQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 378 A HIS 378 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc2 A SG CYS 384 A CYS 384 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc3 A SG CYS 385 A CYS 385 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc4 A SG CYS 392 A CYS 392 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc5 B NE2 HIS 378 B HIS 378 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc6 B SG CYS 384 B CYS 384 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc7 B SG CYS 385 B CYS 385 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc8 B SG CYS 392 B CYS 392 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
#
_chem_comp.formula           'C20 H24 N10 O13 P2' 
_chem_comp.formula_weight    674.411 
_chem_comp.id                1SY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              cGAMP 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2',3' cGAMP;c-GMP-AMP;c[G(2',5')pA(3',5')p]" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O44 P18 1SY doub 1 n n 
O19 P18 1SY sing 2 n n 
P18 O17 1SY sing 3 n n 
P18 O20 1SY sing 4 n n 
O17 C16 1SY sing 5 n n 
O4' C4' 1SY sing 6 n n 
O4' C1' 1SY sing 7 n n 
C16 C4' 1SY sing 8 n n 
C8 N7 1SY doub 9 n y 
C8 N9 1SY sing 10 n y 
N7 C5 1SY sing 11 n y 
O20 C21 1SY sing 12 n n 
N9 C1' 1SY sing 13 n n 
N9 C4 1SY sing 14 n y 
N41 C40 1SY sing 15 n n 
C4' C3' 1SY sing 16 n n 
C1' C2' 1SY sing 17 n n 
C5 C4 1SY doub 18 n y 
C5 C6 1SY sing 19 n y 
N01 C6 1SY sing 20 n n 
C4 N3 1SY sing 21 n y 
C40 N42 1SY sing 22 n n 
C40 N39 1SY doub 23 n n 
C6 N1 1SY doub 24 n y 
N42 C36 1SY sing 25 n n 
N39 C38 1SY sing 26 n n 
C21 C22 1SY sing 27 n n 
C21 C32 1SY sing 28 n n 
O23 C22 1SY sing 29 n n 
N3 C2 1SY doub 30 n y 
C3' C2' 1SY sing 31 n n 
C3' O28 1SY sing 32 n n 
N1 C2 1SY sing 33 n y 
C2' O2' 1SY sing 34 n n 
C36 C37 1SY doub 35 n y 
C36 N33 1SY sing 36 n y 
C38 O43 1SY doub 37 n n 
C38 C37 1SY sing 38 n n 
C22 C24 1SY sing 39 n n 
C32 N33 1SY sing 40 n n 
C32 O31 1SY sing 41 n n 
C37 N35 1SY sing 42 n y 
N33 C34 1SY sing 43 n y 
O28 P27 1SY sing 44 n n 
N35 C34 1SY doub 45 n y 
O31 C24 1SY sing 46 n n 
C24 C25 1SY sing 47 n n 
O26 P27 1SY sing 48 n n 
O26 C25 1SY sing 49 n n 
P27 O29 1SY doub 50 n n 
P27 O30 1SY sing 51 n n 
C2 H1 1SY sing 52 n n 
N01 H2 1SY sing 53 n n 
N01 H3 1SY sing 54 n n 
C8 H4 1SY sing 55 n n 
C1' H5 1SY sing 56 n n 
C2' H6 1SY sing 57 n n 
O2' H7 1SY sing 58 n n 
C3' H8 1SY sing 59 n n 
C4' H9 1SY sing 60 n n 
C16 H10 1SY sing 61 n n 
C16 H11 1SY sing 62 n n 
O19 H12 1SY sing 63 n n 
C21 H13 1SY sing 64 n n 
C22 H14 1SY sing 65 n n 
O23 H15 1SY sing 66 n n 
C24 H16 1SY sing 67 n n 
C25 H17 1SY sing 68 n n 
C25 H18 1SY sing 69 n n 
O30 H19 1SY sing 70 n n 
C32 H20 1SY sing 71 n n 
C34 H21 1SY sing 72 n n 
N41 H22 1SY sing 73 n n 
N41 H23 1SY sing 74 n n 
N42 H24 1SY sing 75 n n 
#
_atom_sites.entry_id                     7BUQ 
_atom_sites.fract_transf_matrix[1][1]    0.020989 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001515 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009106 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013255 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 601 601 ZN ZN . 
D 3 1SY A 1 602 701 1SY LIG . 
E 2 ZN B 1 601 601 ZN ZN . 
F 3 1SY B 1 602 701 1SY LIG . 
G 4 HOH A 1 701 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 1SY . . . D 3 -1.165 13.336 -30.498 1 159.92 ? C2 1SY 602 A 1 
HETATM 2 N N01 1SY . . . D 3 -4.876 13.91 -30.365 1 160.91 ? N01 1SY 602 A 1 
HETATM 3 C C6 1SY . . . D 3 -3.5 13.951 -30.832 1 160.59 ? C6 1SY 602 A 1 
HETATM 4 N N1 1SY . . . D 3 -2.512 13.297 -30.063 1 160.23 ? N1 1SY 602 A 1 
HETATM 5 N N3 1SY . . . D 3 -0.912 14.046 -31.764 1 160 ? N3 1SY 602 A 1 
HETATM 6 C C4 1SY . . . D 3 -1.971 14.715 -32.603 1 160.39 ? C4 1SY 602 A 1 
HETATM 7 C C5 1SY . . . D 3 -3.219 14.685 -32.176 1 160.67 ? C5 1SY 602 A 1 
HETATM 8 N N7 1SY . . . D 3 -3.98 15.311 -33.07 1 160.97 ? N7 1SY 602 A 1 
HETATM 9 C C8 1SY . . . D 3 -3.176 15.753 -34.069 1 160.9 ? C8 1SY 602 A 1 
HETATM 10 N N9 1SY . . . D 3 -1.926 15.41 -33.776 1 160.54 ? N9 1SY 602 A 1 
HETATM 11 C C1' 1SY . . . D 3 -0.705 15.576 -34.562 1 160.28 ? C1' 1SY 602 A 1 
HETATM 12 C C2' 1SY . . . D 3 0.018 16.913 -34.842 1 160.33 ? C2' 1SY 602 A 1 
HETATM 13 O O2' 1SY . . . D 3 -0.039 17.303 -36.193 1 160.43 ? O2' 1SY 602 A 1 
HETATM 14 C C3' 1SY . . . D 3 1.444 16.659 -34.427 1 159.95 ? C3' 1SY 602 A 1 
HETATM 15 C C4' 1SY . . . D 3 1.593 15.228 -34.395 1 159.7 ? C4' 1SY 602 A 1 
HETATM 16 C C16 1SY . . . D 3 2.715 14.911 -33.421 1 159.4 ? C16 1SY 602 A 1 
HETATM 17 O O17 1SY . . . D 3 2.36 13.906 -32.509 1 159.28 ? O17 1SY 602 A 1 
HETATM 18 P P18 1SY . . . D 3 2.833 13.887 -30.968 1 159.16 ? P18 1SY 602 A 1 
HETATM 19 O O19 1SY . . . D 3 1.582 13.48 -30.245 1 159.34 -1 O19 1SY 602 A 1 
HETATM 20 O O20 1SY . . . D 3 3.245 15.354 -30.25 1 159.32 ? O20 1SY 602 A 1 
HETATM 21 C C21 1SY . . . D 3 2.73 16.683 -30.725 1 159.63 ? C21 1SY 602 A 1 
HETATM 22 C C22 1SY . . . D 3 3.775 17.637 -31.2 1 159.58 ? C22 1SY 602 A 1 
HETATM 23 O O23 1SY . . . D 3 4.695 17.936 -30.187 1 159.45 ? O23 1SY 602 A 1 
HETATM 24 C C24 1SY . . . D 3 3.025 18.923 -31.518 1 159.92 ? C24 1SY 602 A 1 
HETATM 25 C C25 1SY . . . D 3 2.112 18.899 -32.708 1 160.11 ? C25 1SY 602 A 1 
HETATM 26 O O26 1SY . . . D 3 2.561 19.592 -33.864 1 160.13 ? O26 1SY 602 A 1 
HETATM 27 P P27 1SY . . . D 3 2.484 18.827 -35.393 1 160.07 ? P27 1SY 602 A 1 
HETATM 28 O O28 1SY . . . D 3 2.445 17.18 -35.322 1 159.85 ? O28 1SY 602 A 1 
HETATM 29 O O29 1SY . . . D 3 1.129 19.097 -35.979 1 160.41 -1 O29 1SY 602 A 1 
HETATM 30 O O30 1SY . . . D 3 3.448 19.335 -36.478 1 159.98 ? O30 1SY 602 A 1 
HETATM 31 O O31 1SY . . . D 3 2.25 18.9 -30.269 1 160.08 ? O31 1SY 602 A 1 
HETATM 32 C C32 1SY . . . D 3 2.133 17.531 -29.769 1 159.9 ? C32 1SY 602 A 1 
HETATM 33 N N33 1SY . . . D 3 0.667 17.37 -29.616 1 160.22 ? N33 1SY 602 A 1 
HETATM 34 C C34 1SY . . . D 3 -0.251 18.025 -30.304 1 160.55 ? C34 1SY 602 A 1 
HETATM 35 N N35 1SY . . . D 3 -1.454 17.657 -29.882 1 160.81 ? N35 1SY 602 A 1 
HETATM 36 C C36 1SY . . . D 3 0.042 16.629 -28.736 1 160.26 ? C36 1SY 602 A 1 
HETATM 37 C C37 1SY . . . D 3 -1.257 16.81 -28.916 1 160.63 ? C37 1SY 602 A 1 
HETATM 38 C C38 1SY . . . D 3 -2.234 16.044 -28.049 1 160.79 ? C38 1SY 602 A 1 
HETATM 39 N N39 1SY . . . D 3 -1.747 15.158 -27.057 1 160.55 ? N39 1SY 602 A 1 
HETATM 40 C C40 1SY . . . D 3 -0.357 14.954 -26.843 1 160.14 ? C40 1SY 602 A 1 
HETATM 41 N N41 1SY . . . D 3 0.161 14.049 -25.833 1 159.89 ? N41 1SY 602 A 1 
HETATM 42 N N42 1SY . . . D 3 0.552 15.679 -27.684 1 160.01 ? N42 1SY 602 A 1 
HETATM 43 O O43 1SY . . . D 3 -3.381 16.2 -28.231 1 161.13 ? O43 1SY 602 A 1 
HETATM 44 O O44 1SY . . . D 3 3.683 12.699 -30.773 1 158.8 ? O44 1SY 602 A 1 
HETATM 45 O O4' 1SY . . . D 3 0.313 14.752 -33.921 1 159.89 ? O4' 1SY 602 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           45 
#