data_7BUQ
#
_model_server_result.job_id            6bAtF0Oay0NC8Kc-rZRgCQ 
_model_server_result.datetime_utc      '2024-11-24 13:28:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7buq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    7BUQ 
#
_exptl.entry_id    7BUQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              674.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            cGAMP 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.13 
_cell.angle_gamma         90 
_cell.entry_id            7BUQ 
_cell.length_a            47.645 
_cell.length_b            109.812 
_cell.length_c            75.637 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BUQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 378 A HIS 378 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc2 A SG CYS 384 A CYS 384 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc3 A SG CYS 385 A CYS 385 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc4 A SG CYS 392 A CYS 392 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc5 B NE2 HIS 378 B HIS 378 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc6 B SG CYS 384 B CYS 384 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc7 B SG CYS 385 B CYS 385 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc8 B SG CYS 392 B CYS 392 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
#
_chem_comp.formula           'C20 H24 N10 O13 P2' 
_chem_comp.formula_weight    674.411 
_chem_comp.id                1SY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              cGAMP 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2',3' cGAMP;c-GMP-AMP;c[G(2',5')pA(3',5')p]" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O44 P18 1SY doub 1 n n 
O19 P18 1SY sing 2 n n 
P18 O17 1SY sing 3 n n 
P18 O20 1SY sing 4 n n 
O17 C16 1SY sing 5 n n 
O4' C4' 1SY sing 6 n n 
O4' C1' 1SY sing 7 n n 
C16 C4' 1SY sing 8 n n 
C8 N7 1SY doub 9 n y 
C8 N9 1SY sing 10 n y 
N7 C5 1SY sing 11 n y 
O20 C21 1SY sing 12 n n 
N9 C1' 1SY sing 13 n n 
N9 C4 1SY sing 14 n y 
N41 C40 1SY sing 15 n n 
C4' C3' 1SY sing 16 n n 
C1' C2' 1SY sing 17 n n 
C5 C4 1SY doub 18 n y 
C5 C6 1SY sing 19 n y 
N01 C6 1SY sing 20 n n 
C4 N3 1SY sing 21 n y 
C40 N42 1SY sing 22 n n 
C40 N39 1SY doub 23 n n 
C6 N1 1SY doub 24 n y 
N42 C36 1SY sing 25 n n 
N39 C38 1SY sing 26 n n 
C21 C22 1SY sing 27 n n 
C21 C32 1SY sing 28 n n 
O23 C22 1SY sing 29 n n 
N3 C2 1SY doub 30 n y 
C3' C2' 1SY sing 31 n n 
C3' O28 1SY sing 32 n n 
N1 C2 1SY sing 33 n y 
C2' O2' 1SY sing 34 n n 
C36 C37 1SY doub 35 n y 
C36 N33 1SY sing 36 n y 
C38 O43 1SY doub 37 n n 
C38 C37 1SY sing 38 n n 
C22 C24 1SY sing 39 n n 
C32 N33 1SY sing 40 n n 
C32 O31 1SY sing 41 n n 
C37 N35 1SY sing 42 n y 
N33 C34 1SY sing 43 n y 
O28 P27 1SY sing 44 n n 
N35 C34 1SY doub 45 n y 
O31 C24 1SY sing 46 n n 
C24 C25 1SY sing 47 n n 
O26 P27 1SY sing 48 n n 
O26 C25 1SY sing 49 n n 
P27 O29 1SY doub 50 n n 
P27 O30 1SY sing 51 n n 
C2 H1 1SY sing 52 n n 
N01 H2 1SY sing 53 n n 
N01 H3 1SY sing 54 n n 
C8 H4 1SY sing 55 n n 
C1' H5 1SY sing 56 n n 
C2' H6 1SY sing 57 n n 
O2' H7 1SY sing 58 n n 
C3' H8 1SY sing 59 n n 
C4' H9 1SY sing 60 n n 
C16 H10 1SY sing 61 n n 
C16 H11 1SY sing 62 n n 
O19 H12 1SY sing 63 n n 
C21 H13 1SY sing 64 n n 
C22 H14 1SY sing 65 n n 
O23 H15 1SY sing 66 n n 
C24 H16 1SY sing 67 n n 
C25 H17 1SY sing 68 n n 
C25 H18 1SY sing 69 n n 
O30 H19 1SY sing 70 n n 
C32 H20 1SY sing 71 n n 
C34 H21 1SY sing 72 n n 
N41 H22 1SY sing 73 n n 
N41 H23 1SY sing 74 n n 
N42 H24 1SY sing 75 n n 
#
_atom_sites.entry_id                     7BUQ 
_atom_sites.fract_transf_matrix[1][1]    0.020989 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001515 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009106 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013255 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 601 601 ZN ZN . 
D 3 1SY A 1 602 701 1SY LIG . 
E 2 ZN B 1 601 601 ZN ZN . 
F 3 1SY B 1 602 701 1SY LIG . 
G 4 HOH A 1 701 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 1SY . . . F 3 22.632 -12.291 1.73 1 103.1 ? C2 1SY 602 B 1 
HETATM 2 N N01 1SY . . . F 3 22.258 -9.247 -0.518 1 102.94 ? N01 1SY 602 B 1 
HETATM 3 C C6 1SY . . . F 3 21.994 -10.404 0.289 1 102.9 ? C6 1SY 602 B 1 
HETATM 4 N N1 1SY . . . F 3 22.993 -11.131 0.968 1 103.15 ? N1 1SY 602 B 1 
HETATM 5 N N3 1SY . . . F 3 21.242 -12.696 1.803 1 102.84 ? N3 1SY 602 B 1 
HETATM 6 C C4 1SY . . . F 3 20.217 -11.913 1.068 1 102.58 ? C4 1SY 602 B 1 
HETATM 7 C C5 1SY . . . F 3 20.562 -10.841 0.353 1 102.59 ? C5 1SY 602 B 1 
HETATM 8 N N7 1SY . . . F 3 19.515 -10.299 -0.237 1 102.33 ? N7 1SY 602 B 1 
HETATM 9 C C8 1SY . . . F 3 18.488 -11.064 0.144 1 102.16 ? C8 1SY 602 B 1 
HETATM 10 N N9 1SY . . . F 3 18.908 -12.052 0.956 1 102.32 ? N9 1SY 602 B 1 
HETATM 11 C C1' 1SY . . . F 3 18.088 -13.069 1.503 1 102.24 ? C1' 1SY 602 B 1 
HETATM 12 C C2' 1SY . . . F 3 17.414 -12.782 2.846 1 102.25 ? C2' 1SY 602 B 1 
HETATM 13 O O2' 1SY . . . F 3 17.607 -13.842 3.752 1 102.58 ? O2' 1SY 602 B 1 
HETATM 14 C C3' 1SY . . . F 3 15.989 -12.514 2.512 1 101.79 ? C3' 1SY 602 B 1 
HETATM 15 C C4' 1SY . . . F 3 15.761 -12.994 1.164 1 101.54 ? C4' 1SY 602 B 1 
HETATM 16 C C16 1SY . . . F 3 14.964 -11.961 0.372 1 101.02 ? C16 1SY 602 B 1 
HETATM 17 O O17 1SY . . . F 3 15.818 -11.066 -0.246 1 100.97 ? O17 1SY 602 B 1 
HETATM 18 P P18 1SY . . . F 3 15.257 -9.708 -0.948 1 100.53 ? P18 1SY 602 B 1 
HETATM 19 O O19 1SY . . . F 3 16.462 -9.137 -1.616 1 100.65 -1 O19 1SY 602 B 1 
HETATM 20 O O20 1SY . . . F 3 14.78 -8.583 0.147 1 100.54 ? O20 1SY 602 B 1 
HETATM 21 C C21 1SY . . . F 3 15.243 -8.788 1.505 1 100.98 ? C21 1SY 602 B 1 
HETATM 22 C C22 1SY . . . F 3 14.159 -9.004 2.496 1 100.98 ? C22 1SY 602 B 1 
HETATM 23 O O23 1SY . . . F 3 13.291 -7.914 2.487 1 100.71 ? O23 1SY 602 B 1 
HETATM 24 C C24 1SY . . . F 3 14.86 -9.017 3.853 1 101.41 ? C24 1SY 602 B 1 
HETATM 25 C C25 1SY . . . F 3 15.682 -10.225 4.183 1 101.77 ? C25 1SY 602 B 1 
HETATM 26 O O26 1SY . . . F 3 15.154 -11.106 5.149 1 101.93 ? O26 1SY 602 B 1 
HETATM 27 P P27 1SY . . . F 3 15.142 -12.767 4.923 1 102.06 ? P27 1SY 602 B 1 
HETATM 28 O O28 1SY . . . F 3 15.087 -13.203 3.365 1 101.82 ? O28 1SY 602 B 1 
HETATM 29 O O29 1SY . . . F 3 16.447 -13.35 5.361 1 102.5 -1 O29 1SY 602 B 1 
HETATM 30 O O30 1SY . . . F 3 14.136 -13.548 5.7 1 102.1 ? O30 1SY 602 B 1 
HETATM 31 O O31 1SY . . . F 3 15.683 -7.864 3.587 1 101.45 ? O31 1SY 602 B 1 
HETATM 32 C C32 1SY . . . F 3 15.879 -7.671 2.155 1 101.18 ? C32 1SY 602 B 1 
HETATM 33 N N33 1SY . . . F 3 17.299 -7.623 2.004 1 101.53 ? N33 1SY 602 B 1 
HETATM 34 C C34 1SY . . . F 3 18.18 -8.22 2.795 1 101.99 ? C34 1SY 602 B 1 
HETATM 35 N N35 1SY . . . F 3 19.399 -7.915 2.373 1 102.26 ? N35 1SY 602 B 1 
HETATM 36 C C36 1SY . . . F 3 17.965 -6.923 1.12 1 101.49 ? C36 1SY 602 B 1 
HETATM 37 C C37 1SY . . . F 3 19.257 -7.111 1.341 1 101.95 ? C37 1SY 602 B 1 
HETATM 38 C C38 1SY . . . F 3 20.259 -6.437 0.444 1 102.07 ? C38 1SY 602 B 1 
HETATM 39 N N39 1SY . . . F 3 19.821 -5.617 -0.603 1 101.66 ? N39 1SY 602 B 1 
HETATM 40 C C40 1SY . . . F 3 18.452 -5.409 -0.848 1 101.14 ? C40 1SY 602 B 1 
HETATM 41 N N41 1SY . . . F 3 18 -4.584 -1.921 1 100.71 ? N41 1SY 602 B 1 
HETATM 42 N N42 1SY . . . F 3 17.509 -6.053 -0.002 1 101.06 ? N42 1SY 602 B 1 
HETATM 43 O O43 1SY . . . F 3 21.388 -6.604 0.62 1 102.52 ? O43 1SY 602 B 1 
HETATM 44 O O44 1SY . . . F 3 14.4 -10.065 -2.109 1 100.1 ? O44 1SY 602 B 1 
HETATM 45 O O4' 1SY . . . F 3 17.029 -13.276 0.533 1 101.79 ? O4' 1SY 602 B 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           45 
#