data_7BV2 # _model_server_result.job_id -KJeLNz6N8ey-mG83aEu9A _model_server_result.datetime_utc '2024-11-14 17:18:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1003}' # _entry.id 7BV2 # _exptl.entry_id 7BV2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 175.959 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BV2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D O3' U 20 P U 20 1_555 K P1 F86 . P F86 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.716 ? metalc ? metalc1 A ND1 HIS 296 A HIS 295 1_555 F ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc2 A SG CYS 302 A CYS 301 1_555 F ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc3 A SG CYS 307 A CYS 306 1_555 F ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 A SG CYS 311 A CYS 310 1_555 F ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 A SG CYS 488 A CYS 487 1_555 G ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc6 A ND1 HIS 643 A HIS 642 1_555 G ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc7 A SG CYS 646 A CYS 645 1_555 G ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc8 A SG CYS 647 A CYS 646 1_555 G ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc9 H O POP . A POP 1003 1_555 I MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc10 J MG MG . A MG 1005 1_555 D OP1 U 20 P U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? hydrog WATSON-CRICK hydrog1 D N1 G 10 P G 10 1_555 E N3 C 21 T C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 D N2 G 10 P G 10 1_555 E O2 C 21 T C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 D O6 G 10 P G 10 1_555 E N4 C 21 T C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-U PAIR' hydrog4 D N6 A 11 P A 11 1_555 E O2 U 20 T U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 D N3 U 12 P U 12 1_555 E N1 A 19 T A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 D O4 U 12 P U 12 1_555 E N6 A 19 T A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 D N3 U 13 P U 13 1_555 E N1 A 18 T A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 D O4 U 13 P U 13 1_555 E N6 A 18 T A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 D N1 A 14 P A 14 1_555 E N3 U 17 T U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 D N6 A 14 P A 14 1_555 E O4 U 17 T U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 D N1 A 15 P A 15 1_555 E N3 U 16 T U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 D N6 A 15 P A 15 1_555 E O4 U 16 T U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 D N1 G 16 P G 16 1_555 E N3 C 15 T C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 D N2 G 16 P G 16 1_555 E O2 C 15 T C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 D O6 G 16 P G 16 1_555 E N4 C 15 T C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 D N3 U 17 P U 17 1_555 E N1 A 14 T A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 D O4 U 17 P U 17 1_555 E N6 A 14 T A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 D N3 U 18 P U 18 1_555 E N1 A 13 T A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 D O4 U 18 P U 18 1_555 E N6 A 13 T A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 D N1 A 19 P A 19 1_555 E N3 U 12 T U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 D N6 A 19 P A 19 1_555 E O4 U 12 T U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 D N3 U 20 P U 20 1_555 E N1 A 11 T A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 D O4 U 20 P U 20 1_555 E N6 A 11 T A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 416 n n P1 O2 POP sing 417 n n P1 O3 POP sing 418 n n P1 O POP sing 419 n n O2 HO2 POP sing 420 n n O P2 POP sing 421 n n P2 O4 POP doub 422 n n P2 O5 POP sing 423 n n P2 O6 POP sing 424 n n O5 HO5 POP sing 425 n n # _atom_sites.entry_id 7BV2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ZN A 1 1001 1001 ZN ZN . G 6 ZN A 1 1002 1002 ZN ZN . H 7 POP A 1 1003 1003 POP POP . I 8 MG A 1 1004 1004 MG MG . J 8 MG A 1 1005 1005 MG MG . K 9 F86 P 1 101 101 F86 F86 . L 10 HOH A 1 1101 1106 HOH HOH . L 10 HOH A 2 1102 1104 HOH HOH . L 10 HOH A 3 1103 1103 HOH HOH . L 10 HOH A 4 1104 1105 HOH HOH . L 10 HOH A 5 1105 1101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . H 7 98.704 88.743 103.451 0.5 19.48 ? P1 POP 1003 A 1 HETATM 2 O O1 POP . . . H 7 100.113 88.777 102.922 0.5 19.48 ? O1 POP 1003 A 1 HETATM 3 O O2 POP . . . H 7 97.985 87.427 103.304 0.5 19.48 ? O2 POP 1003 A 1 HETATM 4 O O3 POP . . . H 7 98.549 89.378 104.805 0.5 19.48 ? O3 POP 1003 A 1 HETATM 5 O O POP . . . H 7 97.928 89.726 102.45 0.5 19.48 ? O POP 1003 A 1 HETATM 6 P P2 POP . . . H 7 96.972 90.885 103.01 0.5 19.48 ? P2 POP 1003 A 1 HETATM 7 O O4 POP . . . H 7 96.725 91.745 101.796 0.5 19.48 ? O4 POP 1003 A 1 HETATM 8 O O5 POP . . . H 7 95.757 90.149 103.511 0.5 19.48 ? O5 POP 1003 A 1 HETATM 9 O O6 POP . . . H 7 97.772 91.527 104.104 0.5 19.48 ? O6 POP 1003 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #