data_7BV2 # _model_server_result.job_id uB2GFYqPVKENzwN6BE0-yA _model_server_result.datetime_utc '2025-08-04 02:13:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":101}' # _entry.id 7BV2 # _exptl.entry_id 7BV2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 371.243 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-cyano-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BV2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D O3' U 20 P U 20 1_555 K P1 F86 . P F86 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.716 ? metalc ? metalc1 A ND1 HIS 296 A HIS 295 1_555 F ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc2 A SG CYS 302 A CYS 301 1_555 F ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc3 A SG CYS 307 A CYS 306 1_555 F ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 A SG CYS 311 A CYS 310 1_555 F ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 A SG CYS 488 A CYS 487 1_555 G ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc6 A ND1 HIS 643 A HIS 642 1_555 G ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc7 A SG CYS 646 A CYS 645 1_555 G ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc8 A SG CYS 647 A CYS 646 1_555 G ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc9 H O POP . A POP 1003 1_555 I MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc10 J MG MG . A MG 1005 1_555 D OP1 U 20 P U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? hydrog WATSON-CRICK hydrog1 D N1 G 10 P G 10 1_555 E N3 C 21 T C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 D N2 G 10 P G 10 1_555 E O2 C 21 T C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 D O6 G 10 P G 10 1_555 E N4 C 21 T C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-U PAIR' hydrog4 D N6 A 11 P A 11 1_555 E O2 U 20 T U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 D N3 U 12 P U 12 1_555 E N1 A 19 T A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 D O4 U 12 P U 12 1_555 E N6 A 19 T A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 D N3 U 13 P U 13 1_555 E N1 A 18 T A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 D O4 U 13 P U 13 1_555 E N6 A 18 T A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 D N1 A 14 P A 14 1_555 E N3 U 17 T U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 D N6 A 14 P A 14 1_555 E O4 U 17 T U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 D N1 A 15 P A 15 1_555 E N3 U 16 T U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 D N6 A 15 P A 15 1_555 E O4 U 16 T U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 D N1 G 16 P G 16 1_555 E N3 C 15 T C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 D N2 G 16 P G 16 1_555 E O2 C 15 T C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 D O6 G 16 P G 16 1_555 E N4 C 15 T C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 D N3 U 17 P U 17 1_555 E N1 A 14 T A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 D O4 U 17 P U 17 1_555 E N6 A 14 T A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 D N3 U 18 P U 18 1_555 E N1 A 13 T A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 D O4 U 18 P U 18 1_555 E N6 A 13 T A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 D N1 A 19 P A 19 1_555 E N3 U 12 T U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 D N6 A 19 P A 19 1_555 E O4 U 12 T U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 D N3 U 20 P U 20 1_555 E N1 A 11 T A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 D O4 U 20 P U 20 1_555 E N6 A 11 T A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C12 H14 N5 O7 P' _chem_comp.formula_weight 371.243 _chem_comp.id F86 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-cyano-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Remdesivir, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C4 F86 sing 158 n n C6 O4 F86 sing 159 n n O5 P1 F86 doub 160 n n O3 C3 F86 sing 161 n n C4 O1 F86 sing 162 n n C4 C3 F86 sing 163 n n N3 C8 F86 trip 164 n n P1 O4 F86 sing 165 n n P1 O6 F86 sing 166 n n O1 C1 F86 sing 167 n n C3 C2 F86 sing 168 n n O2 C2 F86 sing 169 n n C8 C1 F86 sing 170 n n C2 C1 F86 sing 171 n n C1 C5 F86 sing 172 n n C5 C7 F86 doub 173 n y C5 N1 F86 sing 174 n y C7 C10 F86 sing 175 n y N2 N1 F86 sing 176 n y N2 C12 F86 doub 177 n y N1 C9 F86 sing 178 n y C10 C9 F86 doub 179 n y C9 C11 F86 sing 180 n y C12 N4 F86 sing 181 n y C11 N4 F86 doub 182 n y C11 N5 F86 sing 183 n n C6 H1 F86 sing 184 n n C6 H2 F86 sing 185 n n C2 H3 F86 sing 186 n n C4 H4 F86 sing 187 n n O2 H5 F86 sing 188 n n C7 H6 F86 sing 189 n n O6 H7 F86 sing 190 n n C10 H8 F86 sing 191 n n C12 H9 F86 sing 192 n n C3 H10 F86 sing 193 n n N5 H11 F86 sing 194 n n N5 H12 F86 sing 195 n n O3 H13 F86 sing 196 n n P1 O7 F86 sing 197 n n O7 H14 F86 sing 198 n n # _atom_sites.entry_id 7BV2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ZN A 1 1001 1001 ZN ZN . G 6 ZN A 1 1002 1002 ZN ZN . H 7 POP A 1 1003 1003 POP POP . I 8 MG A 1 1004 1004 MG MG . J 8 MG A 1 1005 1005 MG MG . K 9 F86 P 1 101 101 F86 F86 . L 10 HOH A 1 1101 1106 HOH HOH . L 10 HOH A 2 1102 1104 HOH HOH . L 10 HOH A 3 1103 1103 HOH HOH . L 10 HOH A 4 1104 1105 HOH HOH . L 10 HOH A 5 1105 1101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 F86 . . . K 9 90.089 93.714 102.212 0.5 17.13 ? C8 F86 101 P 1 HETATM 2 C C5 F86 . . . K 9 91.043 92.58 104.194 0.5 17.13 ? C5 F86 101 P 1 HETATM 3 C C6 F86 . . . K 9 93.646 90.983 101.106 0.5 17.13 ? C6 F86 101 P 1 HETATM 4 N N1 F86 . . . K 9 90.372 93.279 105.194 0.5 17.13 ? N1 F86 101 P 1 HETATM 5 C C2 F86 . . . K 9 92.527 94.119 102.804 0.5 17.13 ? C2 F86 101 P 1 HETATM 6 N N3 F86 . . . K 9 89.132 94.151 101.727 0.5 17.13 ? N3 F86 101 P 1 HETATM 7 C C4 F86 . . . K 9 92.877 92.286 101.308 0.5 17.13 ? C4 F86 101 P 1 HETATM 8 O O2 F86 . . . K 9 92.236 95.336 102.134 0.5 17.13 ? O2 F86 101 P 1 HETATM 9 N N2 F86 . . . K 9 89.857 94.508 105.12 0.5 17.13 ? N2 F86 101 P 1 HETATM 10 O O4 F86 . . . K 9 93.558 90.117 102.223 0.5 17.13 ? O4 F86 101 P 1 HETATM 11 N N4 F86 . . . K 9 89.204 94.166 107.454 0.5 17.13 ? N4 F86 101 P 1 HETATM 12 C C7 F86 . . . K 9 91.404 91.34 104.711 0.5 17.13 ? C7 F86 101 P 1 HETATM 13 O O6 F86 . . . K 9 92.596 88.024 103.361 0.5 17.13 ? O6 F86 101 P 1 HETATM 14 C C1 F86 . . . K 9 91.312 93.155 102.826 0.5 17.13 ? C1 F86 101 P 1 HETATM 15 C C10 F86 . . . K 9 90.974 91.189 106.069 0.5 17.13 ? C10 F86 101 P 1 HETATM 16 C C11 F86 . . . K 9 89.741 92.925 107.45 0.5 17.13 ? C11 F86 101 P 1 HETATM 17 C C12 F86 . . . K 9 89.278 94.874 106.294 0.5 17.13 ? C12 F86 101 P 1 HETATM 18 C C3 F86 . . . K 9 93.634 93.333 102.101 0.5 17.13 ? C3 F86 101 P 1 HETATM 19 C C9 F86 . . . K 9 90.358 92.437 106.276 0.5 17.13 ? C9 F86 101 P 1 HETATM 20 N N5 F86 . . . K 9 89.647 92.176 108.62 0.5 17.13 ? N5 F86 101 P 1 HETATM 21 O O1 F86 . . . K 9 91.691 92.036 102.032 0.5 17.13 ? O1 F86 101 P 1 HETATM 22 O O3 F86 . . . K 9 94.42 94.107 101.216 0.5 17.13 ? O3 F86 101 P 1 HETATM 23 O O5 F86 . . . K 9 93.876 87.784 101.166 0.5 17.13 ? O5 F86 101 P 1 HETATM 24 P P1 F86 . . . K 9 92.931 88.546 102.018 0.5 17.13 ? P1 F86 101 P 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 92 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 24 #