data_7BV4 # _model_server_result.job_id nKePC-N2hJq52JcaBm-I4Q _model_server_result.datetime_utc '2024-11-05 05:08:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 7BV4 # _exptl.entry_id 7BV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BV4 _cell.length_a 42.943 _cell.length_b 42.943 _cell.length_c 245.6 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall 'P 4w' _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,L,M 1 1 C,D,N,O 2 1 E,F,J,P,Q 3 1 G,H,K,R,S 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 7BV4 _atom_sites.fract_transf_matrix[1][1] 0.023287 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 GOL A 1 201 201 GOL GOL . J 4 PEG E 1 301 301 PEG PEG . K 4 PEG G 1 301 301 PEG PEG . L 5 HOH A 1 301 93 HOH HOH . L 5 HOH A 2 302 12 HOH HOH . L 5 HOH A 3 303 21 HOH HOH . L 5 HOH A 4 304 2 HOH HOH . L 5 HOH A 5 305 32 HOH HOH . L 5 HOH A 6 306 95 HOH HOH . L 5 HOH A 7 307 37 HOH HOH . L 5 HOH A 8 308 46 HOH HOH . L 5 HOH A 9 309 63 HOH HOH . L 5 HOH A 10 310 131 HOH HOH . L 5 HOH A 11 311 79 HOH HOH . L 5 HOH A 12 312 70 HOH HOH . L 5 HOH A 13 313 129 HOH HOH . L 5 HOH A 14 314 36 HOH HOH . L 5 HOH A 15 315 71 HOH HOH . L 5 HOH A 16 316 74 HOH HOH . L 5 HOH A 17 317 52 HOH HOH . L 5 HOH A 18 318 23 HOH HOH . L 5 HOH A 19 319 128 HOH HOH . L 5 HOH A 20 320 127 HOH HOH . L 5 HOH A 21 321 111 HOH HOH . L 5 HOH A 22 322 107 HOH HOH . L 5 HOH A 23 323 89 HOH HOH . L 5 HOH A 24 324 101 HOH HOH . L 5 HOH A 25 325 81 HOH HOH . M 5 HOH C 1 201 112 HOH HOH . N 5 HOH B 1 201 30 HOH HOH . N 5 HOH B 2 202 109 HOH HOH . N 5 HOH B 3 203 19 HOH HOH . N 5 HOH B 4 204 13 HOH HOH . N 5 HOH B 5 205 3 HOH HOH . N 5 HOH B 6 206 86 HOH HOH . N 5 HOH B 7 207 17 HOH HOH . N 5 HOH B 8 208 123 HOH HOH . N 5 HOH B 9 209 92 HOH HOH . N 5 HOH B 10 210 44 HOH HOH . N 5 HOH B 11 211 33 HOH HOH . N 5 HOH B 12 212 27 HOH HOH . N 5 HOH B 13 213 116 HOH HOH . N 5 HOH B 14 214 61 HOH HOH . N 5 HOH B 15 215 25 HOH HOH . N 5 HOH B 16 216 49 HOH HOH . N 5 HOH B 17 217 105 HOH HOH . N 5 HOH B 18 218 60 HOH HOH . N 5 HOH B 19 219 68 HOH HOH . N 5 HOH B 20 220 120 HOH HOH . N 5 HOH B 21 221 138 HOH HOH . N 5 HOH B 22 222 59 HOH HOH . N 5 HOH B 23 223 134 HOH HOH . N 5 HOH B 24 224 87 HOH HOH . N 5 HOH B 25 225 73 HOH HOH . N 5 HOH B 26 226 42 HOH HOH . O 5 HOH D 1 201 135 HOH HOH . O 5 HOH D 2 202 126 HOH HOH . P 5 HOH E 1 401 41 HOH HOH . P 5 HOH E 2 402 103 HOH HOH . P 5 HOH E 3 403 39 HOH HOH . P 5 HOH E 4 404 29 HOH HOH . P 5 HOH E 5 405 83 HOH HOH . P 5 HOH E 6 406 45 HOH HOH . P 5 HOH E 7 407 67 HOH HOH . P 5 HOH E 8 408 139 HOH HOH . P 5 HOH E 9 409 5 HOH HOH . P 5 HOH E 10 410 56 HOH HOH . P 5 HOH E 11 411 9 HOH HOH . P 5 HOH E 12 412 8 HOH HOH . P 5 HOH E 13 413 51 HOH HOH . P 5 HOH E 14 414 104 HOH HOH . P 5 HOH E 15 415 54 HOH HOH . P 5 HOH E 16 416 10 HOH HOH . P 5 HOH E 17 417 72 HOH HOH . P 5 HOH E 18 418 57 HOH HOH . P 5 HOH E 19 419 119 HOH HOH . P 5 HOH E 20 420 43 HOH HOH . P 5 HOH E 21 421 34 HOH HOH . P 5 HOH E 22 422 75 HOH HOH . P 5 HOH E 23 423 84 HOH HOH . P 5 HOH E 24 424 11 HOH HOH . P 5 HOH E 25 425 24 HOH HOH . P 5 HOH E 26 426 1 HOH HOH . P 5 HOH E 27 427 28 HOH HOH . P 5 HOH E 28 428 69 HOH HOH . P 5 HOH E 29 429 14 HOH HOH . P 5 HOH E 30 430 108 HOH HOH . P 5 HOH E 31 431 50 HOH HOH . P 5 HOH E 32 432 48 HOH HOH . P 5 HOH E 33 433 137 HOH HOH . P 5 HOH E 34 434 99 HOH HOH . P 5 HOH E 35 435 80 HOH HOH . P 5 HOH E 36 436 65 HOH HOH . P 5 HOH E 37 437 115 HOH HOH . Q 5 HOH F 1 201 91 HOH HOH . Q 5 HOH F 2 202 125 HOH HOH . R 5 HOH G 1 401 94 HOH HOH . R 5 HOH G 2 402 35 HOH HOH . R 5 HOH G 3 403 98 HOH HOH . R 5 HOH G 4 404 7 HOH HOH . R 5 HOH G 5 405 26 HOH HOH . R 5 HOH G 6 406 18 HOH HOH . R 5 HOH G 7 407 6 HOH HOH . R 5 HOH G 8 408 76 HOH HOH . R 5 HOH G 9 409 38 HOH HOH . R 5 HOH G 10 410 58 HOH HOH . R 5 HOH G 11 411 22 HOH HOH . R 5 HOH G 12 412 66 HOH HOH . R 5 HOH G 13 413 20 HOH HOH . R 5 HOH G 14 414 15 HOH HOH . R 5 HOH G 15 415 40 HOH HOH . R 5 HOH G 16 416 122 HOH HOH . R 5 HOH G 17 417 121 HOH HOH . R 5 HOH G 18 418 114 HOH HOH . R 5 HOH G 19 419 4 HOH HOH . R 5 HOH G 20 420 55 HOH HOH . R 5 HOH G 21 421 106 HOH HOH . R 5 HOH G 22 422 16 HOH HOH . R 5 HOH G 23 423 133 HOH HOH . R 5 HOH G 24 424 47 HOH HOH . R 5 HOH G 25 425 31 HOH HOH . R 5 HOH G 26 426 64 HOH HOH . R 5 HOH G 27 427 53 HOH HOH . R 5 HOH G 28 428 62 HOH HOH . R 5 HOH G 29 429 110 HOH HOH . R 5 HOH G 30 430 136 HOH HOH . R 5 HOH G 31 431 102 HOH HOH . R 5 HOH G 32 432 85 HOH HOH . R 5 HOH G 33 433 117 HOH HOH . S 5 HOH H 1 201 113 HOH HOH . S 5 HOH H 2 202 124 HOH HOH . S 5 HOH H 3 203 90 HOH HOH . S 5 HOH H 4 204 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 3 2.239 -8.763 -51.817 1 35.81 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . I 3 1.671 -9.681 -52.711 1 41.82 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . I 3 2.614 -7.509 -52.622 1 38.72 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . I 3 3.377 -6.635 -51.885 1 42.16 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . I 3 3.407 -8.016 -53.827 1 46.36 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . I 3 4.109 -6.888 -54.308 1 47.64 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #