data_7BVE # _model_server_result.job_id jLLGRuGA8N2FGOEluGVJ2w _model_server_result.datetime_utc '2025-03-09 02:33:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bve # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":101}' # _entry.id 7BVE # _exptl.entry_id 7BVE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 358.348 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-(2-sulfanylethyl)-beta-alaninamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BVE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BVE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 730 A CYS 730 1_555 A SG CYS 973 A CYS 973 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? disulf ? disulf2 B SG CYS 730 B CYS 730 1_555 B SG CYS 973 B CYS 973 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 C OG SER 41 C SER 41 1_555 K P PN7 . C PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.558 ? covale ? covale2 D OG SER 41 D SER 41 1_555 L P PN7 . D PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.557 ? metalc ? metalc1 A OD2 ASP 929 A ASP 929 1_555 E CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc2 A O HIS 936 A HIS 936 1_555 E CA CA . A CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.195 ? metalc ? metalc3 B OD2 ASP 929 B ASP 929 1_555 H CA CA . B CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc4 B O ASP 931 B ASP 931 1_555 H CA CA . B CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc5 B O HIS 936 B HIS 936 1_555 H CA CA . B CA 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.109 ? # _chem_comp.formula 'C11 H23 N2 O7 P S' _chem_comp.formula_weight 358.348 _chem_comp.id PN7 _chem_comp.mon_nstd_flag . _chem_comp.name N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-(2-sulfanylethyl)-beta-alaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C3 PN7 sing 295 n n C3 C4 PN7 sing 296 n n C3 C2 PN7 sing 297 n n O4 C4 PN7 doub 298 n n CE2 C2 PN7 sing 299 n n C4 N5 PN7 sing 300 n n C1 C2 PN7 sing 301 n n C1 O3P PN7 sing 302 n n N5 C6 PN7 sing 303 n n C2 CE1 PN7 sing 304 n n C6 C7 PN7 sing 305 n n O2P P PN7 doub 306 n n O1P P PN7 sing 307 n n C7 C8 PN7 sing 308 n n P O3P PN7 sing 309 n n O8 C8 PN7 doub 310 n n C8 N9 PN7 sing 311 n n N9 C10 PN7 sing 312 n n S12 C11 PN7 sing 313 n n C10 C11 PN7 sing 314 n n O3 H1 PN7 sing 315 n n C1 H2 PN7 sing 316 n n C1 H3 PN7 sing 317 n n O1P H4 PN7 sing 318 n n CE1 H5 PN7 sing 319 n n CE1 H6 PN7 sing 320 n n CE1 H7 PN7 sing 321 n n CE2 H8 PN7 sing 322 n n CE2 H9 PN7 sing 323 n n CE2 H10 PN7 sing 324 n n C3 H11 PN7 sing 325 n n N5 H12 PN7 sing 326 n n C6 H13 PN7 sing 327 n n C6 H14 PN7 sing 328 n n C7 H15 PN7 sing 329 n n C7 H16 PN7 sing 330 n n N9 H17 PN7 sing 331 n n C10 H18 PN7 sing 332 n n C10 H19 PN7 sing 333 n n C11 H20 PN7 sing 334 n n C11 H21 PN7 sing 335 n n S12 H22 PN7 sing 336 n n P O4P PN7 sing 337 n n O4P H23 PN7 sing 338 n n # _atom_sites.entry_id 7BVE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA A 1 1101 1101 CA CA . F 4 PO4 A 1 1102 1102 PO4 PO4 . G 5 95E A 1 1103 1103 95E EMB . H 3 CA B 1 1101 1101 CA CA . I 4 PO4 B 1 1102 1102 PO4 PO4 . J 5 95E B 1 1103 1103 95E EMB . K 6 PN7 C 1 101 101 PN7 PN7 . L 6 PN7 D 1 101 101 PN7 PN7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 PN7 . . . K 6 115.411 128.839 114.064 1 100.63 ? O3 PN7 101 C 1 HETATM 2 O O4 PN7 . . . K 6 114.486 131.251 114.882 1 100.63 ? O4 PN7 101 C 1 HETATM 3 C C2 PN7 . . . K 6 117.279 130.112 114.743 1 100.63 ? C2 PN7 101 C 1 HETATM 4 C C1 PN7 . . . K 6 118.442 129.151 114.964 1 100.63 ? C1 PN7 101 C 1 HETATM 5 P P PN7 . . . K 6 119.25 126.856 113.964 1 100.63 ? P PN7 101 C 1 HETATM 6 O O1P PN7 . . . K 6 120.028 126.31 115.131 1 100.63 ? O1P PN7 101 C 1 HETATM 7 O O2P PN7 . . . K 6 118.597 125.725 113.216 1 100.63 ? O2P PN7 101 C 1 HETATM 8 O O3P PN7 . . . K 6 118.081 127.887 114.486 1 100.63 ? O3P PN7 101 C 1 HETATM 9 C CE1 PN7 . . . K 6 117.168 130.452 113.268 1 100.63 ? CE1 PN7 101 C 1 HETATM 10 C CE2 PN7 . . . K 6 117.542 131.385 115.538 1 100.63 ? CE2 PN7 101 C 1 HETATM 11 C C3 PN7 . . . K 6 115.974 129.455 115.181 1 100.63 ? C3 PN7 101 C 1 HETATM 12 C C4 PN7 . . . K 6 114.979 130.51 115.66 1 100.63 ? C4 PN7 101 C 1 HETATM 13 N N5 PN7 . . . K 6 114.603 130.605 117.054 1 100.63 ? N5 PN7 101 C 1 HETATM 14 C C6 PN7 . . . K 6 113.65 131.623 117.449 1 100.63 ? C6 PN7 101 C 1 HETATM 15 C C7 PN7 . . . K 6 112.697 131.059 118.498 1 100.63 ? C7 PN7 101 C 1 HETATM 16 C C8 PN7 . . . K 6 111.624 131.979 119.077 1 100.63 ? C8 PN7 101 C 1 HETATM 17 O O8 PN7 . . . K 6 111.511 133.088 118.682 1 100.63 ? O8 PN7 101 C 1 HETATM 18 N N9 PN7 . . . K 6 110.751 131.483 120.119 1 100.63 ? N9 PN7 101 C 1 HETATM 19 C C10 PN7 . . . K 6 109.727 132.337 120.688 1 100.63 ? C10 PN7 101 C 1 HETATM 20 C C11 PN7 . . . K 6 109.314 131.799 122.053 1 100.63 ? C11 PN7 101 C 1 HETATM 21 S S12 PN7 . . . K 6 109.642 130.016 122.117 1 100.63 ? S12 PN7 101 C 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 21 #