data_7BVF
#
_model_server_result.job_id            p_kDHVOJ7n8uB-Tn5Ia26Q 
_model_server_result.datetime_utc      '2024-10-19 16:22:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bvf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1403}' 
#
_entry.id    7BVF 
#
_exptl.entry_id    7BVF 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              779.165 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MONO-TRANS,OCTA-CIS DECAPRENYL-PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BVF 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BVF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 952 B ASP 952 1_555 D CA CA . B CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.199 ? 
metalc ? metalc2 A OD2 ASP 952 B ASP 952 1_555 D CA CA . B CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc3 A O SER 954 B SER 954 1_555 D CA CA . B CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc4 A O ASP 959 B ASP 959 1_555 D CA CA . B CA 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
#
_chem_comp.formula           'C50 H83 O4 P' 
_chem_comp.formula_weight    779.165 
_chem_comp.id                DSL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MONO-TRANS, OCTA-CIS DECAPRENYL-PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C06 C07 DSL sing 375 n n 
C07 C08 DSL sing 376 n n 
C07 C09 DSL doub 377 n n 
C09 C10 DSL sing 378 n n 
C10 C11 DSL sing 379 n n 
C11 C12 DSL sing 380 n n 
C12 C13 DSL sing 381 n n 
C12 C14 DSL doub 382 n n 
C14 C15 DSL sing 383 n n 
C15 C16 DSL sing 384 n n 
C16 C17 DSL sing 385 n n 
C17 C18 DSL sing 386 n n 
C17 C19 DSL doub 387 n n 
C19 C20 DSL sing 388 n n 
C20 C21 DSL sing 389 n n 
C21 C22 DSL sing 390 n n 
C22 C23 DSL sing 391 n n 
C22 C24 DSL doub 392 n n 
C24 C25 DSL sing 393 e n 
C25 C26 DSL sing 394 n n 
C26 C27 DSL sing 395 n n 
C27 C28 DSL sing 396 n n 
C27 C29 DSL doub 397 n n 
C29 C30 DSL sing 398 n n 
C30 C31 DSL sing 399 n n 
C31 C32 DSL sing 400 n n 
C32 C33 DSL sing 401 n n 
C32 C34 DSL doub 402 n n 
C34 C35 DSL sing 403 n n 
C35 C36 DSL sing 404 n n 
C36 C37 DSL sing 405 n n 
C37 C38 DSL sing 406 z n 
C37 C39 DSL doub 407 n n 
C39 C40 DSL sing 408 n n 
C40 C41 DSL sing 409 n n 
C41 C42 DSL sing 410 n n 
C42 C43 DSL sing 411 n n 
C42 C44 DSL doub 412 n n 
C44 C45 DSL sing 413 n n 
C45 C46 DSL sing 414 n n 
C46 C47 DSL sing 415 n n 
C47 C48 DSL sing 416 n n 
C47 C49 DSL doub 417 n n 
C49 C50 DSL sing 418 n n 
C50 C51 DSL sing 419 z n 
C51 C52 DSL sing 420 n n 
C52 C53 DSL sing 421 n n 
C52 C54 DSL doub 422 n n 
C54 C55 DSL sing 423 n n 
C55 O56 DSL sing 424 n n 
O56 P57 DSL sing 425 n n 
P57 O58 DSL doub 426 n n 
P57 O59 DSL sing 427 n n 
P57 O60 DSL sing 428 n n 
C06 H061 DSL sing 429 n n 
C06 H062 DSL sing 430 n n 
C06 H063 DSL sing 431 n n 
C08 H081 DSL sing 432 z n 
C08 H082 DSL sing 433 n n 
C08 H083 DSL sing 434 n n 
C09 H09 DSL sing 435 n n 
C10 H101 DSL sing 436 n n 
C10 H102 DSL sing 437 n n 
C11 H111 DSL sing 438 n n 
C11 H112 DSL sing 439 n n 
C13 H131 DSL sing 440 n n 
C13 H132 DSL sing 441 n n 
C13 H133 DSL sing 442 n n 
C14 H14 DSL sing 443 n n 
C15 H151 DSL sing 444 n n 
C15 H152 DSL sing 445 z n 
C16 H161 DSL sing 446 n n 
C16 H162 DSL sing 447 n n 
C18 H181 DSL sing 448 n n 
C18 H182 DSL sing 449 n n 
C18 H183 DSL sing 450 n n 
C19 H19 DSL sing 451 n n 
C20 H201 DSL sing 452 n n 
C20 H202 DSL sing 453 n n 
C21 H211 DSL sing 454 n n 
C21 H212 DSL sing 455 n n 
C23 H231 DSL sing 456 n n 
C23 H232 DSL sing 457 n n 
C23 H233 DSL sing 458 z n 
C24 H24 DSL sing 459 n n 
C25 H251 DSL sing 460 n n 
C25 H252 DSL sing 461 n n 
C26 H261 DSL sing 462 n n 
C26 H262 DSL sing 463 n n 
C28 H281 DSL sing 464 n n 
C28 H282 DSL sing 465 n n 
C28 H283 DSL sing 466 n n 
C29 H29 DSL sing 467 n n 
C30 H301 DSL sing 468 n n 
C30 H302 DSL sing 469 n n 
C31 H311 DSL sing 470 n n 
C31 H312 DSL sing 471 z n 
C33 H331 DSL sing 472 n n 
C33 H332 DSL sing 473 n n 
C33 H333 DSL sing 474 n n 
C34 H34 DSL sing 475 n n 
C35 H351 DSL sing 476 n n 
C35 H352 DSL sing 477 n n 
C36 H361 DSL sing 478 n n 
C36 H362 DSL sing 479 n n 
C38 H381 DSL sing 480 n n 
C38 H382 DSL sing 481 n n 
C38 H383 DSL sing 482 n n 
C39 H39 DSL sing 483 n n 
C40 H401 DSL sing 484 z n 
C40 H402 DSL sing 485 n n 
C41 H411 DSL sing 486 n n 
C41 H412 DSL sing 487 n n 
C43 H431 DSL sing 488 n n 
C43 H432 DSL sing 489 n n 
C43 H433 DSL sing 490 n n 
C44 H44 DSL sing 491 n n 
C45 H451 DSL sing 492 n n 
C45 H452 DSL sing 493 n n 
C46 H461 DSL sing 494 n n 
C46 H462 DSL sing 495 n n 
C48 H481 DSL sing 496 n n 
C48 H482 DSL sing 497 z n 
C48 H483 DSL sing 498 n n 
C49 H49 DSL sing 499 n n 
C50 H501 DSL sing 500 n n 
C50 H502 DSL sing 501 n n 
C51 H511 DSL sing 502 n n 
C51 H512 DSL sing 503 n n 
C53 H531 DSL sing 504 n n 
C53 H532 DSL sing 505 n n 
C53 H533 DSL sing 506 n n 
C54 H54 DSL sing 507 n n 
C55 H551 DSL sing 508 n n 
C55 H552 DSL sing 509 n n 
O60 H60 DSL sing 510 n n 
O59 H59 DSL sing 511 n n 
#
_atom_sites.entry_id                     7BVF 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 CA B 1 1401 1401 CA CA . 
E 5 95E B 1 1402 1501 95E EMB . 
F 6 DSL B 1 1403 1601 DSL DP . 
G 7 CDL B 1 1404 1301 CDL CDL . 
H 7 CDL A 1 1101 1404 CDL CDL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C15 DSL . . . F 6 145.43 164.116 185.128 1 61.13 ? C15 DSL 1403 B 1 
HETATM 2 C C16 DSL . . . F 6 146.753 164.721 185.599 1 61.13 ? C16 DSL 1403 B 1 
HETATM 3 C C17 DSL . . . F 6 147.81 164.156 184.681 1 61.13 ? C17 DSL 1403 B 1 
HETATM 4 C C18 DSL . . . F 6 147.33 163.441 183.439 1 61.13 ? C18 DSL 1403 B 1 
HETATM 5 C C19 DSL . . . F 6 149.125 164.243 184.877 1 61.13 ? C19 DSL 1403 B 1 
HETATM 6 C C20 DSL . . . F 6 149.912 164.879 186.034 1 61.13 ? C20 DSL 1403 B 1 
HETATM 7 C C21 DSL . . . F 6 151.162 163.983 186.207 1 61.13 ? C21 DSL 1403 B 1 
HETATM 8 C C22 DSL . . . F 6 152.223 164.77 186.947 1 61.13 ? C22 DSL 1403 B 1 
HETATM 9 C C23 DSL . . . F 6 151.698 166.042 187.588 1 61.13 ? C23 DSL 1403 B 1 
HETATM 10 C C24 DSL . . . F 6 153.532 164.393 187.026 1 61.13 ? C24 DSL 1403 B 1 
HETATM 11 C C25 DSL . . . F 6 154.162 163.095 186.42 1 61.13 ? C25 DSL 1403 B 1 
HETATM 12 C C26 DSL . . . F 6 155.566 163.236 185.754 1 61.13 ? C26 DSL 1403 B 1 
HETATM 13 C C27 DSL . . . F 6 155.485 164.187 184.549 1 61.13 ? C27 DSL 1403 B 1 
HETATM 14 C C28 DSL . . . F 6 154.719 165.492 184.673 1 61.13 ? C28 DSL 1403 B 1 
HETATM 15 C C29 DSL . . . F 6 156.05 163.897 183.381 1 61.13 ? C29 DSL 1403 B 1 
HETATM 16 C C30 DSL . . . F 6 155.99 164.791 182.118 1 61.13 ? C30 DSL 1403 B 1 
HETATM 17 C C31 DSL . . . F 6 156.246 163.853 180.896 1 61.13 ? C31 DSL 1403 B 1 
HETATM 18 C C32 DSL . . . F 6 155.841 164.424 179.554 1 61.13 ? C32 DSL 1403 B 1 
HETATM 19 C C33 DSL . . . F 6 154.618 165.295 179.567 1 61.13 ? C33 DSL 1403 B 1 
HETATM 20 C C34 DSL . . . F 6 156.498 164.205 178.417 1 61.13 ? C34 DSL 1403 B 1 
HETATM 21 C C35 DSL . . . F 6 157.75 163.345 178.403 1 61.13 ? C35 DSL 1403 B 1 
HETATM 22 C C36 DSL . . . F 6 159.036 164.18 178.19 1 61.13 ? C36 DSL 1403 B 1 
HETATM 23 C C37 DSL . . . F 6 159.937 164.362 179.421 1 61.13 ? C37 DSL 1403 B 1 
HETATM 24 C C38 DSL . . . F 6 159.546 165.261 180.571 1 61.13 ? C38 DSL 1403 B 1 
HETATM 25 C C39 DSL . . . F 6 161.104 163.774 179.534 1 61.13 ? C39 DSL 1403 B 1 
HETATM 26 C C40 DSL . . . F 6 161.868 164.054 180.822 1 61.13 ? C40 DSL 1403 B 1 
HETATM 27 C C41 DSL . . . F 6 163.352 163.667 180.811 1 61.13 ? C41 DSL 1403 B 1 
HETATM 28 C C42 DSL . . . F 6 163.581 162.861 179.581 1 61.13 ? C42 DSL 1403 B 1 
HETATM 29 C C43 DSL . . . F 6 163.152 161.42 179.624 1 61.13 ? C43 DSL 1403 B 1 
HETATM 30 C C44 DSL . . . F 6 164.097 163.39 178.53 1 61.13 ? C44 DSL 1403 B 1 
HETATM 31 C C45 DSL . . . F 6 164.159 162.414 177.402 1 61.13 ? C45 DSL 1403 B 1 
HETATM 32 C C46 DSL . . . F 6 165.524 162.042 176.887 1 61.13 ? C46 DSL 1403 B 1 
HETATM 33 C C47 DSL . . . F 6 165.546 160.538 176.938 1 61.13 ? C47 DSL 1403 B 1 
HETATM 34 C C48 DSL . . . F 6 166.084 159.736 175.77 1 61.13 ? C48 DSL 1403 B 1 
HETATM 35 C C49 DSL . . . F 6 165.058 160.03 178.045 1 61.13 ? C49 DSL 1403 B 1 
HETATM 36 C C50 DSL . . . F 6 164.965 158.574 178.387 1 61.13 ? C50 DSL 1403 B 1 
HETATM 37 C C51 DSL . . . F 6 163.743 158.032 177.723 1 61.13 ? C51 DSL 1403 B 1 
HETATM 38 C C52 DSL . . . F 6 163.101 157.296 178.851 1 61.13 ? C52 DSL 1403 B 1 
HETATM 39 C C53 DSL . . . F 6 162.918 158.083 180.132 1 61.13 ? C53 DSL 1403 B 1 
HETATM 40 C C54 DSL . . . F 6 162.746 156.043 178.693 1 61.13 ? C54 DSL 1403 B 1 
HETATM 41 C C55 DSL . . . F 6 163.018 155.381 177.347 1 61.13 ? C55 DSL 1403 B 1 
HETATM 42 O O56 DSL . . . F 6 161.955 154.647 176.832 1 61.13 ? O56 DSL 1403 B 1 
HETATM 43 P P57 DSL . . . F 6 162.36 153.593 175.705 1 61.13 ? P57 DSL 1403 B 1 
HETATM 44 O O58 DSL . . . F 6 163.771 153.346 175.867 1 61.13 ? O58 DSL 1403 B 1 
HETATM 45 O O59 DSL . . . F 6 161.733 152.273 175.805 1 61.13 ? O59 DSL 1403 B 1 
HETATM 46 O O60 DSL . . . F 6 162.512 153.952 174.3 1 61.13 ? O60 DSL 1403 B 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           46 
#