data_7BVH # _model_server_result.job_id uSb25m0A7pXlSoR4PYayaw _model_server_result.datetime_utc '2025-09-04 10:50:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bvh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":1204}' # _entry.id 7BVH # _exptl.entry_id 7BVH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.13 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-arabinofuranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BVH _cell.length_a 121.08 _cell.length_b 176.33 _cell.length_c 207.77 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BVH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 O N N ? 7 P N N ? 7 S N N ? 7 T N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 BXY BXY C1 O1 . O5 HO5 . sing 2 ? 4 2 1 GLC BGC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E BXY 1 E 1 BXY A 1082 BBB 3 n E BXY 2 E 2 BXY A 1082 BBB 4 n F BGC 1 F 1 BGC A 1084 MAA 4 n F GLC 2 F 2 GLC A 1084 MAA 4 n G BGC 1 G 1 BGC A 1086 MAA 4 n G GLC 2 G 2 GLC A 1086 MAA 4 n H BGC 1 H 1 BGC B 1086 MAA 4 n H GLC 2 H 2 GLC B 1086 MAA 4 n I BGC 1 I 1 BGC A 1085 MAA 4 n I GLC 2 I 2 GLC A 1085 MAA 3 n J BXY 1 J 1 BXY B 1082 BBB 3 n J BXY 2 J 2 BXY B 1082 BBB 4 n K BGC 1 K 1 BGC B 1084 MAA 4 n K GLC 2 K 2 GLC B 1084 MAA 4 n L BGC 1 L 1 BGC B 1085 MAA 4 n L GLC 2 L 2 GLC B 1085 MAA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 743 A CYS 730 1_555 A SG CYS 986 A CYS 973 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 743 B CYS 730 1_555 B SG CYS 986 B CYS 973 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 E O5 BXY . E BXY 1 1_555 E C1 BXY . E BXY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 F O4 BGC . F BGC 1 1_555 F C1 GLC . F GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale3 G O4 BGC . G BGC 1 1_555 G C1 GLC . G GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale4 H O4 BGC . H BGC 1 1_555 H C1 GLC . H GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale5 I O4 BGC . I BGC 1 1_555 I C1 GLC . I GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale6 J O5 BXY . J BXY 1 1_555 J C1 BXY . J BXY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale7 K O4 BGC . K BGC 1 1_555 K C1 GLC . K GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale8 L O4 BGC . L BGC 1 1_555 L C1 GLC . L GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? metalc ? metalc1 A OD1 ASP 942 A ASP 929 1_555 M CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc2 A OD2 ASP 942 A ASP 929 1_555 M CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc3 A O ASP 944 A ASP 931 1_555 M CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc4 A O HIS 949 A HIS 936 1_555 M CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc5 B OD1 ASP 942 B ASP 929 1_555 Q CA CA . B CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc6 B OD2 ASP 942 B ASP 929 1_555 Q CA CA . B CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc7 B O ASP 944 B ASP 931 1_555 Q CA CA . B CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc8 B O ALA 946 B ALA 933 1_555 Q CA CA . B CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.175 ? # _chem_comp.formula 'C5 H10 O5' _chem_comp.formula_weight 150.13 _chem_comp.id BXY _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-arabinofuranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-arabinose;D-arabinose;arabinose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C5 BXY sing 94 n n O5 HO5 BXY sing 95 n n C5 H51 BXY sing 96 n n C5 H52 BXY sing 97 n n C4 C5 BXY sing 98 n n C4 H4 BXY sing 99 n n C3 C4 BXY sing 100 n n C3 O3 BXY sing 101 n n C3 H3 BXY sing 102 n n O3 HO3 BXY sing 103 n n C2 C3 BXY sing 104 n n C2 H2 BXY sing 105 n n O2 C2 BXY sing 106 n n O2 HO2 BXY sing 107 n n C1 C2 BXY sing 108 n n C1 O4 BXY sing 109 n n C1 O1 BXY sing 110 n n O4 C4 BXY sing 111 n n C1 H1 BXY sing 112 n n O1 HO1 BXY sing 113 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BXY DArafa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BXY a-D-arabinofuranose 'COMMON NAME' GMML 1 BXY a-D-Araf 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BXY Ara 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7BVH _atom_sites.fract_transf_matrix[1][1] 0.008259 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 CA A 1 1201 1081 CA CA . N 6 PO4 A 1 1202 1083 PO4 PO4 . O 7 BXY A 1 1203 1087 BXY AAA . P 7 BXY A 1 1204 1088 BXY AAA . Q 5 CA B 1 1201 1081 CA CA . R 6 PO4 B 1 1202 1083 PO4 PO4 . S 7 BXY B 1 1203 1087 BXY AAA . T 7 BXY B 1 1204 1088 BXY AAA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 BXY . . . T 7 126.408 222.121 59.291 1 106.99 ? O5 BXY 1204 B 1 HETATM 2 C C5 BXY . . . T 7 127.261 221.714 60.307 1 108.35 ? C5 BXY 1204 B 1 HETATM 3 C C4 BXY . . . T 7 126.782 222.193 61.663 1 111.1 ? C4 BXY 1204 B 1 HETATM 4 C C3 BXY . . . T 7 126.159 221.134 62.442 1 109.77 ? C3 BXY 1204 B 1 HETATM 5 O O3 BXY . . . T 7 126.226 221.507 63.744 1 108.96 ? O3 BXY 1204 B 1 HETATM 6 C C2 BXY . . . T 7 124.768 221.252 62.004 1 111.46 ? C2 BXY 1204 B 1 HETATM 7 O O2 BXY . . . T 7 124.728 220.835 60.712 1 111.57 ? O2 BXY 1204 B 1 HETATM 8 C C1 BXY . . . T 7 124.634 222.681 61.953 1 113.86 ? C1 BXY 1204 B 1 HETATM 9 O O4 BXY . . . T 7 125.866 223.181 61.635 1 113.86 ? O4 BXY 1204 B 1 HETATM 10 O O1 BXY . . . T 7 124.29 223.067 63.204 1 114.7 ? O1 BXY 1204 B 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 219 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #