data_7BVP # _model_server_result.job_id FFhZjxbo4GLVVZLUQNrioA _model_server_result.datetime_utc '2024-10-19 17:25:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bvp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":901}' # _entry.id 7BVP # _exptl.entry_id 7BVP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BVP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 J N N ? 2 K N N ? 2 M N N ? 2 N N N ? 2 P N N ? 2 Q N N ? 2 S N N ? 2 T N N ? 2 V N N ? 2 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 655 A ASP 653 1_555 I ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc2 A NE2 HIS 659 A HIS 657 1_555 I ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc3 A NE2 HIS 725 A HIS 723 1_555 I ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc4 A NE2 HIS 739 A HIS 737 1_555 I ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc5 B OD2 ASP 655 B ASP 653 1_555 L ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc6 B NE2 HIS 659 B HIS 657 1_555 L ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc7 B NE2 HIS 725 B HIS 723 1_555 L ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc8 B NE2 HIS 739 B HIS 737 1_555 L ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc9 C OD2 ASP 655 C ASP 653 1_555 O ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc10 C NE2 HIS 659 C HIS 657 1_555 O ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc11 C NE2 HIS 725 C HIS 723 1_555 O ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc12 C NE2 HIS 739 C HIS 737 1_555 O ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc13 D OD2 ASP 655 D ASP 653 1_555 R ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc14 D NE2 HIS 659 D HIS 657 1_555 R ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc15 D NE2 HIS 725 D HIS 723 1_555 R ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc16 D NE2 HIS 739 D HIS 737 1_555 R ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc17 E OD2 ASP 655 E ASP 653 1_555 U ZN ZN . E ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc18 E NE2 HIS 659 E HIS 657 1_555 U ZN ZN . E ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc19 E NE2 HIS 725 E HIS 723 1_555 U ZN ZN . E ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc20 E NE2 HIS 739 E HIS 737 1_555 U ZN ZN . E ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc21 F OD2 ASP 655 F ASP 653 1_555 X ZN ZN . F ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc22 F NE2 HIS 659 F HIS 657 1_555 X ZN ZN . F ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc23 F NE2 HIS 725 F HIS 723 1_555 X ZN ZN . F ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc24 F NE2 HIS 739 F HIS 737 1_555 X ZN ZN . F ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 7BVP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAD A 1 901 870 NAD NAD . H 2 NAD A 1 902 871 NAD NAD . I 3 ZN A 1 903 872 ZN ZN . J 2 NAD B 1 901 870 NAD NAD . K 2 NAD B 1 902 871 NAD NAD . L 3 ZN B 1 903 872 ZN ZN . M 2 NAD C 1 901 870 NAD NAD . N 2 NAD C 1 902 871 NAD NAD . O 3 ZN C 1 903 872 ZN ZN . P 2 NAD D 1 901 870 NAD NAD . Q 2 NAD D 1 902 871 NAD NAD . R 3 ZN D 1 903 872 ZN ZN . S 2 NAD E 1 901 870 NAD NAD . T 2 NAD E 1 902 871 NAD NAD . U 3 ZN E 1 903 872 ZN ZN . V 2 NAD F 1 901 870 NAD NAD . W 2 NAD F 1 902 871 NAD NAD . X 3 ZN F 1 903 872 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . J 2 145.08 97.903 124.379 1 49.92 ? PA NAD 901 B 1 HETATM 2 O O1A NAD . . . J 2 144.263 97.869 123.11 1 49.92 ? O1A NAD 901 B 1 HETATM 3 O O2A NAD . . . J 2 145.205 99.19 125.159 1 49.92 ? O2A NAD 901 B 1 HETATM 4 O O5B NAD . . . J 2 144.517 96.766 125.37 1 49.92 ? O5B NAD 901 B 1 HETATM 5 C C5B NAD . . . J 2 143.517 95.851 124.925 1 49.92 ? C5B NAD 901 B 1 HETATM 6 C C4B NAD . . . J 2 142.675 95.397 126.111 1 49.92 ? C4B NAD 901 B 1 HETATM 7 O O4B NAD . . . J 2 142.369 96.518 126.944 1 49.92 ? O4B NAD 901 B 1 HETATM 8 C C3B NAD . . . J 2 141.362 94.783 125.651 1 49.92 ? C3B NAD 901 B 1 HETATM 9 O O3B NAD . . . J 2 141.302 93.409 126.055 1 49.92 ? O3B NAD 901 B 1 HETATM 10 C C2B NAD . . . J 2 140.258 95.629 126.272 1 49.92 ? C2B NAD 901 B 1 HETATM 11 O O2B NAD . . . J 2 139.382 94.868 127.113 1 49.92 ? O2B NAD 901 B 1 HETATM 12 C C1B NAD . . . J 2 140.959 96.7 127.095 1 49.92 ? C1B NAD 901 B 1 HETATM 13 N N9A NAD . . . J 2 140.571 98.045 126.602 1 49.92 ? N9A NAD 901 B 1 HETATM 14 C C8A NAD . . . J 2 141.353 98.878 125.89 1 49.92 ? C8A NAD 901 B 1 HETATM 15 N N7A NAD . . . J 2 140.7 100.031 125.595 1 49.92 ? N7A NAD 901 B 1 HETATM 16 C C5A NAD . . . J 2 139.467 99.944 126.127 1 49.92 ? C5A NAD 901 B 1 HETATM 17 C C6A NAD . . . J 2 138.266 100.811 126.188 1 49.92 ? C6A NAD 901 B 1 HETATM 18 N N6A NAD . . . J 2 138.254 102.034 125.604 1 49.92 ? N6A NAD 901 B 1 HETATM 19 N N1A NAD . . . J 2 137.183 100.34 126.845 1 49.92 ? N1A NAD 901 B 1 HETATM 20 C C2A NAD . . . J 2 137.182 99.127 127.429 1 49.92 ? C2A NAD 901 B 1 HETATM 21 N N3A NAD . . . J 2 138.235 98.29 127.413 1 49.92 ? N3A NAD 901 B 1 HETATM 22 C C4A NAD . . . J 2 139.387 98.634 126.79 1 49.92 ? C4A NAD 901 B 1 HETATM 23 O O3 NAD . . . J 2 146.561 97.373 124.039 1 49.92 ? O3 NAD 901 B 1 HETATM 24 P PN NAD . . . J 2 146.801 95.84 123.609 1 49.92 ? PN NAD 901 B 1 HETATM 25 O O1N NAD . . . J 2 145.939 95.546 122.405 1 49.92 ? O1N NAD 901 B 1 HETATM 26 O O2N NAD . . . J 2 146.688 94.98 124.845 1 49.92 ? O2N NAD 901 B 1 HETATM 27 O O5D NAD . . . J 2 148.341 95.843 123.137 1 49.92 ? O5D NAD 901 B 1 HETATM 28 C C5D NAD . . . J 2 149.388 96.053 124.082 1 49.92 ? C5D NAD 901 B 1 HETATM 29 C C4D NAD . . . J 2 149.696 97.542 124.176 1 49.92 ? C4D NAD 901 B 1 HETATM 30 O O4D NAD . . . J 2 149.692 97.95 125.546 1 49.92 ? O4D NAD 901 B 1 HETATM 31 C C3D NAD . . . J 2 151.066 97.861 123.595 1 49.92 ? C3D NAD 901 B 1 HETATM 32 O O3D NAD . . . J 2 150.92 98.691 122.436 1 49.92 ? O3D NAD 901 B 1 HETATM 33 C C2D NAD . . . J 2 151.851 98.537 124.711 1 49.92 ? C2D NAD 901 B 1 HETATM 34 O O2D NAD . . . J 2 152.265 99.867 124.371 1 49.92 ? O2D NAD 901 B 1 HETATM 35 C C1D NAD . . . J 2 150.921 98.583 125.915 1 49.92 ? C1D NAD 901 B 1 HETATM 36 N N1N NAD . . . J 2 151.531 97.868 127.039 1 49.92 ? N1N NAD 901 B 1 HETATM 37 C C2N NAD . . . J 2 152.133 98.562 128.013 1 49.92 ? C2N NAD 901 B 1 HETATM 38 C C3N NAD . . . J 2 152.72 97.91 129.092 1 49.92 ? C3N NAD 901 B 1 HETATM 39 C C7N NAD . . . J 2 153.392 98.696 130.178 1 49.92 ? C7N NAD 901 B 1 HETATM 40 O O7N NAD . . . J 2 154.475 98.327 130.601 1 49.92 ? O7N NAD 901 B 1 HETATM 41 N N7N NAD . . . J 2 152.786 99.783 130.653 1 49.92 ? N7N NAD 901 B 1 HETATM 42 C C4N NAD . . . J 2 152.679 96.524 129.156 1 49.92 ? C4N NAD 901 B 1 HETATM 43 C C5N NAD . . . J 2 152.049 95.828 128.134 1 49.92 ? C5N NAD 901 B 1 HETATM 44 C C6N NAD . . . J 2 151.479 96.531 127.079 1 49.92 ? C6N NAD 901 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 59 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #