data_7BVP
#
_model_server_result.job_id            ZL1lATylxK7jSv3jAwkruQ 
_model_server_result.datetime_utc      '2025-03-13 19:24:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bvp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":902}' 
#
_entry.id    7BVP 
#
_exptl.entry_id    7BVP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7BVP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BVP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
? 2 P N N 
? 2 Q N N 
? 2 S N N 
? 2 T N N 
? 2 V N N 
? 2 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 655 A ASP 653 1_555 I ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc2 A NE2 HIS 659 A HIS 657 1_555 I ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc3 A NE2 HIS 725 A HIS 723 1_555 I ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc4 A NE2 HIS 739 A HIS 737 1_555 I ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc5 B OD2 ASP 655 B ASP 653 1_555 L ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc6 B NE2 HIS 659 B HIS 657 1_555 L ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc7 B NE2 HIS 725 B HIS 723 1_555 L ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc8 B NE2 HIS 739 B HIS 737 1_555 L ZN ZN . B ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc9 C OD2 ASP 655 C ASP 653 1_555 O ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc10 C NE2 HIS 659 C HIS 657 1_555 O ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc11 C NE2 HIS 725 C HIS 723 1_555 O ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc12 C NE2 HIS 739 C HIS 737 1_555 O ZN ZN . C ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc13 D OD2 ASP 655 D ASP 653 1_555 R ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc14 D NE2 HIS 659 D HIS 657 1_555 R ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc15 D NE2 HIS 725 D HIS 723 1_555 R ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc16 D NE2 HIS 739 D HIS 737 1_555 R ZN ZN . D ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc17 E OD2 ASP 655 E ASP 653 1_555 U ZN ZN . E ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc18 E NE2 HIS 659 E HIS 657 1_555 U ZN ZN . E ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc19 E NE2 HIS 725 E HIS 723 1_555 U ZN ZN . E ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc20 E NE2 HIS 739 E HIS 737 1_555 U ZN ZN . E ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc21 F OD2 ASP 655 F ASP 653 1_555 X ZN ZN . F ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc22 F NE2 HIS 659 F HIS 657 1_555 X ZN ZN . F ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc23 F NE2 HIS 725 F HIS 723 1_555 X ZN ZN . F ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc24 F NE2 HIS 739 F HIS 737 1_555 X ZN ZN . F ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 235 n n 
PA O2A NAD sing 236 n n 
PA O5B NAD sing 237 n n 
PA O3 NAD sing 238 n n 
O2A HOA2 NAD sing 239 n n 
O5B C5B NAD sing 240 n n 
C5B C4B NAD sing 241 n n 
C5B H51A NAD sing 242 n n 
C5B H52A NAD sing 243 n n 
C4B O4B NAD sing 244 n n 
C4B C3B NAD sing 245 n n 
C4B H4B NAD sing 246 n n 
O4B C1B NAD sing 247 n n 
C3B O3B NAD sing 248 n n 
C3B C2B NAD sing 249 n n 
C3B H3B NAD sing 250 n n 
O3B HO3A NAD sing 251 n n 
C2B O2B NAD sing 252 n n 
C2B C1B NAD sing 253 n n 
C2B H2B NAD sing 254 n n 
O2B HO2A NAD sing 255 n n 
C1B N9A NAD sing 256 n n 
C1B H1B NAD sing 257 n n 
N9A C8A NAD sing 258 n y 
N9A C4A NAD sing 259 n y 
C8A N7A NAD doub 260 n y 
C8A H8A NAD sing 261 n n 
N7A C5A NAD sing 262 n y 
C5A C6A NAD sing 263 n y 
C5A C4A NAD doub 264 n y 
C6A N6A NAD sing 265 n n 
C6A N1A NAD doub 266 n y 
N6A H61A NAD sing 267 n n 
N6A H62A NAD sing 268 n n 
N1A C2A NAD sing 269 n y 
C2A N3A NAD doub 270 n y 
C2A H2A NAD sing 271 n n 
N3A C4A NAD sing 272 n y 
O3 PN NAD sing 273 n n 
PN O1N NAD doub 274 n n 
PN O2N NAD sing 275 n n 
PN O5D NAD sing 276 n n 
O5D C5D NAD sing 277 n n 
C5D C4D NAD sing 278 n n 
C5D H51N NAD sing 279 n n 
C5D H52N NAD sing 280 n n 
C4D O4D NAD sing 281 n n 
C4D C3D NAD sing 282 n n 
C4D H4D NAD sing 283 n n 
O4D C1D NAD sing 284 n n 
C3D O3D NAD sing 285 n n 
C3D C2D NAD sing 286 n n 
C3D H3D NAD sing 287 n n 
O3D HO3N NAD sing 288 n n 
C2D O2D NAD sing 289 n n 
C2D C1D NAD sing 290 n n 
C2D H2D NAD sing 291 n n 
O2D HO2N NAD sing 292 n n 
C1D N1N NAD sing 293 n n 
C1D H1D NAD sing 294 n n 
N1N C2N NAD sing 295 n y 
N1N C6N NAD doub 296 n y 
C2N C3N NAD doub 297 n y 
C2N H2N NAD sing 298 n n 
C3N C7N NAD sing 299 n n 
C3N C4N NAD sing 300 n y 
C7N O7N NAD doub 301 n n 
C7N N7N NAD sing 302 n n 
N7N H71N NAD sing 303 n n 
N7N H72N NAD sing 304 n n 
C4N C5N NAD doub 305 n y 
C4N H4N NAD sing 306 n n 
C5N C6N NAD sing 307 n y 
C5N H5N NAD sing 308 n n 
C6N H6N NAD sing 309 n n 
#
_atom_sites.entry_id                     7BVP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NAD A 1 901 870 NAD NAD . 
H 2 NAD A 1 902 871 NAD NAD . 
I 3 ZN A 1 903 872 ZN ZN . 
J 2 NAD B 1 901 870 NAD NAD . 
K 2 NAD B 1 902 871 NAD NAD . 
L 3 ZN B 1 903 872 ZN ZN . 
M 2 NAD C 1 901 870 NAD NAD . 
N 2 NAD C 1 902 871 NAD NAD . 
O 3 ZN C 1 903 872 ZN ZN . 
P 2 NAD D 1 901 870 NAD NAD . 
Q 2 NAD D 1 902 871 NAD NAD . 
R 3 ZN D 1 903 872 ZN ZN . 
S 2 NAD E 1 901 870 NAD NAD . 
T 2 NAD E 1 902 871 NAD NAD . 
U 3 ZN E 1 903 872 ZN ZN . 
V 2 NAD F 1 901 870 NAD NAD . 
W 2 NAD F 1 902 871 NAD NAD . 
X 3 ZN F 1 903 872 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . K 2 164.797 152.3 181.162 1 46.03 ? PA NAD 902 B 1 
HETATM 2 O O1A NAD . . . K 2 165.917 151.858 180.251 1 46.03 ? O1A NAD 902 B 1 
HETATM 3 O O2A NAD . . . K 2 163.459 152.689 180.579 1 46.03 ? O2A NAD 902 B 1 
HETATM 4 O O5B NAD . . . K 2 165.33 153.527 182.058 1 46.03 ? O5B NAD 902 B 1 
HETATM 5 C C5B NAD . . . K 2 164.422 154.506 182.558 1 46.03 ? C5B NAD 902 B 1 
HETATM 6 C C4B NAD . . . K 2 165.135 155.844 182.716 1 46.03 ? C4B NAD 902 B 1 
HETATM 7 O O4B NAD . . . K 2 165.587 155.997 184.064 1 46.03 ? O4B NAD 902 B 1 
HETATM 8 C C3B NAD . . . K 2 166.348 155.948 181.803 1 46.03 ? C3B NAD 902 B 1 
HETATM 9 O O3B NAD . . . K 2 166.119 156.955 180.808 1 46.03 ? O3B NAD 902 B 1 
HETATM 10 C C2B NAD . . . K 2 167.531 156.269 182.707 1 46.03 ? C2B NAD 902 B 1 
HETATM 11 O O2B NAD . . . K 2 168.172 157.505 182.365 1 46.03 ? O2B NAD 902 B 1 
HETATM 12 C C1B NAD . . . K 2 166.971 156.355 184.119 1 46.03 ? C1B NAD 902 B 1 
HETATM 13 N N9A NAD . . . K 2 167.7 155.417 185.009 1 46.03 ? N9A NAD 902 B 1 
HETATM 14 C C8A NAD . . . K 2 167.871 154.099 184.794 1 46.03 ? C8A NAD 902 B 1 
HETATM 15 N N7A NAD . . . K 2 168.585 153.528 185.798 1 46.03 ? N7A NAD 902 B 1 
HETATM 16 C C5A NAD . . . K 2 168.883 154.497 186.683 1 46.03 ? C5A NAD 902 B 1 
HETATM 17 C C6A NAD . . . K 2 169.615 154.58 187.97 1 46.03 ? C6A NAD 902 B 1 
HETATM 18 N N6A NAD . . . K 2 170.185 153.483 188.524 1 46.03 ? N6A NAD 902 B 1 
HETATM 19 N N1A NAD . . . K 2 169.694 155.789 188.57 1 46.03 ? N1A NAD 902 B 1 
HETATM 20 C C2A NAD . . . K 2 169.133 156.886 188.03 1 46.03 ? C2A NAD 902 B 1 
HETATM 21 N N3A NAD . . . K 2 168.456 156.883 186.868 1 46.03 ? N3A NAD 902 B 1 
HETATM 22 C C4A NAD . . . K 2 168.298 155.74 186.158 1 46.03 ? C4A NAD 902 B 1 
HETATM 23 O O3 NAD . . . K 2 164.552 151.144 182.256 1 46.03 ? O3 NAD 902 B 1 
HETATM 24 P PN NAD . . . K 2 163.113 150.433 182.386 1 46.03 ? PN NAD 902 B 1 
HETATM 25 O O1N NAD . . . K 2 162.054 151.51 182.395 1 46.03 ? O1N NAD 902 B 1 
HETATM 26 O O2N NAD . . . K 2 163.181 149.435 183.517 1 46.03 ? O2N NAD 902 B 1 
HETATM 27 O O5D NAD . . . K 2 162.995 149.621 181.001 1 46.03 ? O5D NAD 902 B 1 
HETATM 28 C C5D NAD . . . K 2 161.759 149.576 180.291 1 46.03 ? C5D NAD 902 B 1 
HETATM 29 C C4D NAD . . . K 2 162.03 149.337 178.811 1 46.03 ? C4D NAD 902 B 1 
HETATM 30 O O4D NAD . . . K 2 162.67 148.071 178.635 1 46.03 ? O4D NAD 902 B 1 
HETATM 31 C C3D NAD . . . K 2 160.738 149.325 178.008 1 46.03 ? C3D NAD 902 B 1 
HETATM 32 O O3D NAD . . . K 2 160.745 150.405 177.066 1 46.03 ? O3D NAD 902 B 1 
HETATM 33 C C2D NAD . . . K 2 160.669 147.959 177.338 1 46.03 ? C2D NAD 902 B 1 
HETATM 34 O O2D NAD . . . K 2 160.604 148.044 175.908 1 46.03 ? O2D NAD 902 B 1 
HETATM 35 C C1D NAD . . . K 2 161.933 147.221 177.75 1 46.03 ? C1D NAD 902 B 1 
HETATM 36 N N1N NAD . . . K 2 161.581 145.977 178.438 1 46.03 ? N1N NAD 902 B 1 
HETATM 37 C C2N NAD . . . K 2 162.21 144.842 178.109 1 46.03 ? C2N NAD 902 B 1 
HETATM 38 C C3N NAD . . . K 2 161.896 143.647 178.745 1 46.03 ? C3N NAD 902 B 1 
HETATM 39 C C7N NAD . . . K 2 162.609 142.383 178.367 1 46.03 ? C7N NAD 902 B 1 
HETATM 40 O O7N NAD . . . K 2 162.111 141.306 178.653 1 46.03 ? O7N NAD 902 B 1 
HETATM 41 N N7N NAD . . . K 2 163.774 142.469 177.727 1 46.03 ? N7N NAD 902 B 1 
HETATM 42 C C4N NAD . . . K 2 160.919 143.632 179.73 1 46.03 ? C4N NAD 902 B 1 
HETATM 43 C C5N NAD . . . K 2 160.281 144.822 180.052 1 46.03 ? C5N NAD 902 B 1 
HETATM 44 C C6N NAD . . . K 2 160.634 145.99 179.385 1 46.03 ? C6N NAD 902 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    70 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#