data_7BVQ
#
_model_server_result.job_id            7Cj75bQXjinK10-Hq8dPog 
_model_server_result.datetime_utc      '2024-11-18 20:28:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bvq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1409}' 
#
_entry.id    7BVQ 
#
_exptl.entry_id    7BVQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              300.434 
_entity.id                          6 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2,3-dihydroxypropyl (7Z)-tetradec-7-enoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         92.137 
_cell.angle_beta          90.714 
_cell.angle_gamma         116.647 
_cell.entry_id            7BVQ 
_cell.length_a            52.134 
_cell.length_b            52.825 
_cell.length_c            142.749 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BVQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,X 1 1 
B,C,S,T,U,V,W,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 L N N 
? 6 V N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   GLC 
_pdbx_entity_branch_link.comp_id_2                   GLC 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O4 
_pdbx_entity_branch_link.leaving_atom_id_2           HO4 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C GLC 1 C 1 GLC D 1202 MAL 
2 n C GLC 2 C 2 GLC D 1202 MAL 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 248 A CYS 1131 1_555 A SG CYS 333 A CYS 1216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 A SG CYS 326 A CYS 1209 1_555 A SG CYS 332 A CYS 1215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf3 B SG CYS 248 B CYS 1131 1_555 B SG CYS 333 B CYS 1216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 B SG CYS 326 B CYS 1209 1_555 B SG CYS 332 B CYS 1215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 C O4 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 sing 
metalc ? metalc1 A O CYS 326 A CYS 1209 1_555 M NA NA . A NA 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc2 A O ASP 329 A ASP 1212 1_555 M NA NA . A NA 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
metalc ? metalc3 A O CYS 332 A CYS 1215 1_555 M NA NA . A NA 1410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
#
_chem_comp.formula           'C17 H32 O4' 
_chem_comp.formula_weight    300.434 
_chem_comp.id                1WV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2,3-dihydroxypropyl (7Z)-tetradec-7-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C20 O21 1WV sing 1 n n 
C20 C18 1WV sing 2 n n 
O19 C18 1WV sing 3 n n 
C18 C17 1WV sing 4 n n 
C17 O16 1WV sing 5 n n 
O16 C14 1WV sing 6 n n 
C14 O15 1WV doub 7 n n 
C14 C13 1WV sing 8 n n 
C13 C12 1WV sing 9 n n 
C12 C11 1WV sing 10 n n 
C11 C10 1WV sing 11 n n 
C10 C09 1WV sing 12 n n 
C09 C08 1WV sing 13 n n 
C08 C07 1WV doub 14 z n 
C10 H1 1WV sing 15 n n 
C13 H2 1WV sing 16 n n 
C17 H3 1WV sing 17 n n 
C17 H4 1WV sing 18 n n 
C20 H5 1WV sing 19 n n 
C20 H6 1WV sing 20 n n 
C07 H8 1WV sing 21 n n 
C08 H10 1WV sing 22 n n 
C09 H12 1WV sing 23 n n 
C09 H13 1WV sing 24 n n 
C11 H14 1WV sing 25 n n 
C12 H15 1WV sing 26 n n 
C18 H16 1WV sing 27 n n 
O19 H17 1WV sing 28 n n 
O21 H18 1WV sing 29 n n 
C07 C1 1WV sing 30 n n 
C1 C2 1WV sing 31 n n 
C2 C3 1WV sing 32 n n 
C3 C4 1WV sing 33 n n 
C4 C5 1WV sing 34 n n 
C5 C6 1WV sing 35 n n 
C10 H7 1WV sing 36 n n 
C13 H9 1WV sing 37 n n 
C11 H11 1WV sing 38 n n 
C12 H19 1WV sing 39 n n 
C1 H20 1WV sing 40 n n 
C1 H21 1WV sing 41 n n 
C2 H22 1WV sing 42 n n 
C2 H23 1WV sing 43 n n 
C3 H24 1WV sing 44 n n 
C3 H25 1WV sing 45 n n 
C4 H26 1WV sing 46 n n 
C4 H27 1WV sing 47 n n 
C5 H28 1WV sing 48 n n 
C5 H29 1WV sing 49 n n 
C6 H30 1WV sing 50 n n 
C6 H31 1WV sing 51 n n 
C6 H32 1WV sing 52 n n 
#
_atom_sites.entry_id                     7BVQ 
_atom_sites.fract_transf_matrix[1][1]    0.019181 
_atom_sites.fract_transf_matrix[1][2]    0.009625 
_atom_sites.fract_transf_matrix[1][3]    0.000702 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02118 
_atom_sites.fract_transf_matrix[2][3]    0.001017 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007014 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 CLR A 1 1401 412 CLR CLR . 
E 4 CAU A 1 1402 5 CAU CAU . 
F 5 SO4 A 1 1403 1 SO4 SO4 . 
G 5 SO4 A 1 1404 2 SO4 SO4 . 
H 5 SO4 A 1 1405 6 SO4 SO4 . 
I 5 SO4 A 1 1406 7 SO4 SO4 . 
J 5 SO4 A 1 1407 8 SO4 SO4 . 
K 5 SO4 A 1 1408 9 SO4 SO4 . 
L 6 1WV A 1 1409 1403 1WV 1WV . 
M 7 NA A 1 1410 1 NA NA . 
N 8 CIT A 1 1411 1 CIT CIT . 
O 8 CIT A 1 1412 2 CIT CIT . 
P 9 PG4 A 1 1413 1 PG4 PG4 . 
Q 9 PG4 A 1 1414 2 PG4 PG4 . 
R 9 PG4 A 1 1415 5 PG4 PG4 . 
S 4 CAU B 1 1401 6 CAU CAU . 
T 5 SO4 B 1 1403 3 SO4 SO4 . 
U 5 SO4 B 1 1404 4 SO4 SO4 . 
V 6 1WV B 1 1405 1404 1WV 1WV . 
W 9 PG4 B 1 1406 3 PG4 PG4 . 
X 10 HOH A 1 1501 176 HOH HOH . 
X 10 HOH A 2 1502 35 HOH HOH . 
X 10 HOH A 3 1503 45 HOH HOH . 
X 10 HOH A 4 1504 133 HOH HOH . 
X 10 HOH A 5 1505 121 HOH HOH . 
X 10 HOH A 6 1506 26 HOH HOH . 
X 10 HOH A 7 1507 34 HOH HOH . 
X 10 HOH A 8 1508 17 HOH HOH . 
X 10 HOH A 9 1509 54 HOH HOH . 
X 10 HOH A 10 1510 8 HOH HOH . 
X 10 HOH A 11 1511 138 HOH HOH . 
X 10 HOH A 12 1512 30 HOH HOH . 
X 10 HOH A 13 1513 173 HOH HOH . 
X 10 HOH A 14 1514 114 HOH HOH . 
X 10 HOH A 15 1515 50 HOH HOH . 
X 10 HOH A 16 1516 122 HOH HOH . 
X 10 HOH A 17 1517 83 HOH HOH . 
X 10 HOH A 18 1518 84 HOH HOH . 
X 10 HOH A 19 1519 134 HOH HOH . 
X 10 HOH A 20 1520 163 HOH HOH . 
X 10 HOH A 21 1521 95 HOH HOH . 
X 10 HOH A 22 1522 77 HOH HOH . 
X 10 HOH A 23 1523 36 HOH HOH . 
X 10 HOH A 24 1524 75 HOH HOH . 
X 10 HOH A 25 1525 82 HOH HOH . 
X 10 HOH A 26 1526 28 HOH HOH . 
X 10 HOH A 27 1527 169 HOH HOH . 
X 10 HOH A 28 1528 72 HOH HOH . 
X 10 HOH A 29 1529 38 HOH HOH . 
X 10 HOH A 30 1530 172 HOH HOH . 
X 10 HOH A 31 1531 111 HOH HOH . 
X 10 HOH A 32 1532 6 HOH HOH . 
X 10 HOH A 33 1533 60 HOH HOH . 
X 10 HOH A 34 1534 123 HOH HOH . 
X 10 HOH A 35 1535 47 HOH HOH . 
X 10 HOH A 36 1536 79 HOH HOH . 
X 10 HOH A 37 1537 14 HOH HOH . 
X 10 HOH A 38 1538 180 HOH HOH . 
X 10 HOH A 39 1539 74 HOH HOH . 
X 10 HOH A 40 1540 81 HOH HOH . 
X 10 HOH A 41 1541 58 HOH HOH . 
X 10 HOH A 42 1542 165 HOH HOH . 
X 10 HOH A 43 1543 87 HOH HOH . 
X 10 HOH A 44 1544 86 HOH HOH . 
X 10 HOH A 45 1545 46 HOH HOH . 
X 10 HOH A 46 1546 44 HOH HOH . 
X 10 HOH A 47 1547 62 HOH HOH . 
X 10 HOH A 48 1548 33 HOH HOH . 
X 10 HOH A 49 1549 78 HOH HOH . 
X 10 HOH A 50 1550 179 HOH HOH . 
X 10 HOH A 51 1551 162 HOH HOH . 
X 10 HOH A 52 1552 65 HOH HOH . 
X 10 HOH A 53 1553 18 HOH HOH . 
X 10 HOH A 54 1554 4 HOH HOH . 
X 10 HOH A 55 1555 11 HOH HOH . 
X 10 HOH A 56 1556 154 HOH HOH . 
X 10 HOH A 57 1557 167 HOH HOH . 
X 10 HOH A 58 1558 89 HOH HOH . 
X 10 HOH A 59 1559 70 HOH HOH . 
X 10 HOH A 60 1560 140 HOH HOH . 
X 10 HOH A 61 1561 177 HOH HOH . 
X 10 HOH A 62 1562 102 HOH HOH . 
X 10 HOH A 63 1563 2 HOH HOH . 
X 10 HOH A 64 1564 19 HOH HOH . 
X 10 HOH A 65 1565 9 HOH HOH . 
X 10 HOH A 66 1566 41 HOH HOH . 
X 10 HOH A 67 1567 168 HOH HOH . 
X 10 HOH A 68 1568 88 HOH HOH . 
X 10 HOH A 69 1569 117 HOH HOH . 
X 10 HOH A 70 1570 67 HOH HOH . 
X 10 HOH A 71 1571 131 HOH HOH . 
X 10 HOH A 72 1572 43 HOH HOH . 
X 10 HOH A 73 1573 148 HOH HOH . 
X 10 HOH A 74 1574 146 HOH HOH . 
X 10 HOH A 75 1575 144 HOH HOH . 
X 10 HOH A 76 1576 174 HOH HOH . 
X 10 HOH A 77 1577 16 HOH HOH . 
X 10 HOH A 78 1578 119 HOH HOH . 
X 10 HOH A 79 1579 66 HOH HOH . 
X 10 HOH A 80 1580 127 HOH HOH . 
X 10 HOH A 81 1581 68 HOH HOH . 
X 10 HOH A 82 1582 61 HOH HOH . 
X 10 HOH A 83 1583 120 HOH HOH . 
X 10 HOH A 84 1584 155 HOH HOH . 
X 10 HOH A 85 1585 125 HOH HOH . 
X 10 HOH A 86 1586 64 HOH HOH . 
X 10 HOH A 87 1587 150 HOH HOH . 
X 10 HOH A 88 1588 69 HOH HOH . 
X 10 HOH A 89 1589 57 HOH HOH . 
X 10 HOH A 90 1590 130 HOH HOH . 
Y 10 HOH B 1 1501 48 HOH HOH . 
Y 10 HOH B 2 1502 115 HOH HOH . 
Y 10 HOH B 3 1503 106 HOH HOH . 
Y 10 HOH B 4 1504 108 HOH HOH . 
Y 10 HOH B 5 1505 141 HOH HOH . 
Y 10 HOH B 6 1506 13 HOH HOH . 
Y 10 HOH B 7 1507 91 HOH HOH . 
Y 10 HOH B 8 1508 164 HOH HOH . 
Y 10 HOH B 9 1509 99 HOH HOH . 
Y 10 HOH B 10 1510 31 HOH HOH . 
Y 10 HOH B 11 1511 24 HOH HOH . 
Y 10 HOH B 12 1512 93 HOH HOH . 
Y 10 HOH B 13 1513 27 HOH HOH . 
Y 10 HOH B 14 1514 22 HOH HOH . 
Y 10 HOH B 15 1515 100 HOH HOH . 
Y 10 HOH B 16 1516 170 HOH HOH . 
Y 10 HOH B 17 1517 25 HOH HOH . 
Y 10 HOH B 18 1518 142 HOH HOH . 
Y 10 HOH B 19 1519 132 HOH HOH . 
Y 10 HOH B 20 1520 80 HOH HOH . 
Y 10 HOH B 21 1521 104 HOH HOH . 
Y 10 HOH B 22 1522 118 HOH HOH . 
Y 10 HOH B 23 1523 52 HOH HOH . 
Y 10 HOH B 24 1524 1 HOH HOH . 
Y 10 HOH B 25 1525 15 HOH HOH . 
Y 10 HOH B 26 1526 32 HOH HOH . 
Y 10 HOH B 27 1527 166 HOH HOH . 
Y 10 HOH B 28 1528 145 HOH HOH . 
Y 10 HOH B 29 1529 151 HOH HOH . 
Y 10 HOH B 30 1530 110 HOH HOH . 
Y 10 HOH B 31 1531 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 1WV . . . L 6 36.939 -25.887 0.268 1 69.61 ? C10 1WV 1409 A 1 
HETATM 2 C C13 1WV . . . L 6 35.069 -25.905 -3.172 1 71.95 ? C13 1WV 1409 A 1 
HETATM 3 C C17 1WV . . . L 6 34.076 -24.608 -6.364 1 76.11 ? C17 1WV 1409 A 1 
HETATM 4 C C20 1WV . . . L 6 32.105 -25.932 -7.181 1 81.52 ? C20 1WV 1409 A 1 
HETATM 5 C C07 1WV . . . L 6 36.792 -26.472 4.093 1 58.46 ? C07 1WV 1409 A 1 
HETATM 6 C C08 1WV . . . L 6 37.439 -26.09 2.76 1 63.59 ? C08 1WV 1409 A 1 
HETATM 7 C C09 1WV . . . L 6 36.716 -26.69 1.555 1 65.71 ? C09 1WV 1409 A 1 
HETATM 8 C C11 1WV . . . L 6 36.097 -26.41 -0.901 1 66.34 ? C11 1WV 1409 A 1 
HETATM 9 C C12 1WV . . . L 6 36.154 -25.532 -2.156 1 70.62 ? C12 1WV 1409 A 1 
HETATM 10 C C14 1WV . . . L 6 35.372 -25.511 -4.622 1 77.71 ? C14 1WV 1409 A 1 
HETATM 11 O O15 1WV . . . L 6 35.837 -24.191 -4.67 1 79.95 ? O15 1WV 1409 A 1 
HETATM 12 O O16 1WV . . . L 6 34.216 -25.627 -5.412 1 75.43 ? O16 1WV 1409 A 1 
HETATM 13 C C18 1WV . . . L 6 32.623 -24.534 -6.832 1 83.12 ? C18 1WV 1409 A 1 
HETATM 14 O O19 1WV . . . L 6 32.535 -23.697 -7.956 1 86.51 ? O19 1WV 1409 A 1 
HETATM 15 O O21 1WV . . . L 6 30.804 -25.816 -7.7 1 86.59 ? O21 1WV 1409 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#