data_7BVU # _model_server_result.job_id 1JIVIekcfQgtCyGj2R58EA _model_server_result.datetime_utc '2024-10-18 15:28:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":304}' # _entry.id 7BVU # _exptl.entry_id 7BVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BVU _cell.length_a 48.619 _cell.length_b 72.402 _cell.length_c 157.957 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,O 1 1 B,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 17 A ASN 11 1_555 G K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc2 A OG1 THR 21 A THR 15 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc3 A O GLY 35 A GLY 29 1_555 G K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc4 A O TRP 37 A TRP 31 1_555 G K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc5 A OG1 THR 41 A THR 35 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc6 D O3B GDP . A GDP 302 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc7 D O1B GDP . A GDP 302 1_555 G K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc8 D O1A GDP . A GDP 302 1_555 G K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc9 F MG MG . A MG 304 1_555 O O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc10 F MG MG . A MG 304 1_555 O O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc11 B OD1 ASN 17 B ASN 11 1_555 M K K . B K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc12 B OG1 THR 21 B THR 15 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc13 B O GLY 35 B GLY 29 1_555 M K K . B K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc14 B O TRP 37 B TRP 31 1_555 M K K . B K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc15 B OG1 THR 41 B THR 35 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc16 J O2B GDP . B GDP 302 1_555 L MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc17 J O3B GDP . B GDP 302 1_555 M K K . B K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? metalc ? metalc18 J O2A GDP . B GDP 302 1_555 M K K . B K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc19 L MG MG . B MG 304 1_555 P O HOH . B HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc20 L MG MG . B MG 304 1_555 P O HOH . B HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7BVU _atom_sites.fract_transf_matrix[1][1] 0.020568 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 301 301 EDO EDO . D 3 GDP A 1 302 401 GDP GDP . E 4 ALF A 1 303 402 ALF ALF . F 5 MG A 1 304 403 MG MG . G 6 K A 1 305 404 K K . H 7 CL A 1 306 405 CL CL . I 2 EDO B 1 301 301 EDO EDO . J 3 GDP B 1 302 401 GDP GDP . K 4 ALF B 1 303 402 ALF ALF . L 5 MG B 1 304 403 MG MG . M 6 K B 1 305 404 K K . N 7 CL B 1 306 405 CL CL . O 8 HOH A 1 401 572 HOH HOH . O 8 HOH A 2 402 545 HOH HOH . O 8 HOH A 3 403 577 HOH HOH . O 8 HOH A 4 404 522 HOH HOH . O 8 HOH A 5 405 571 HOH HOH . O 8 HOH A 6 406 512 HOH HOH . O 8 HOH A 7 407 506 HOH HOH . O 8 HOH A 8 408 515 HOH HOH . O 8 HOH A 9 409 561 HOH HOH . O 8 HOH A 10 410 527 HOH HOH . O 8 HOH A 11 411 559 HOH HOH . O 8 HOH A 12 412 517 HOH HOH . O 8 HOH A 13 413 557 HOH HOH . O 8 HOH A 14 414 583 HOH HOH . O 8 HOH A 15 415 549 HOH HOH . O 8 HOH A 16 416 531 HOH HOH . O 8 HOH A 17 417 505 HOH HOH . O 8 HOH A 18 418 508 HOH HOH . O 8 HOH A 19 419 532 HOH HOH . O 8 HOH A 20 420 528 HOH HOH . O 8 HOH A 21 421 558 HOH HOH . O 8 HOH A 22 422 523 HOH HOH . O 8 HOH A 23 423 525 HOH HOH . O 8 HOH A 24 424 539 HOH HOH . O 8 HOH A 25 425 501 HOH HOH . O 8 HOH A 26 426 567 HOH HOH . O 8 HOH A 27 427 553 HOH HOH . O 8 HOH A 28 428 510 HOH HOH . O 8 HOH A 29 429 503 HOH HOH . O 8 HOH A 30 430 541 HOH HOH . O 8 HOH A 31 431 504 HOH HOH . O 8 HOH A 32 432 514 HOH HOH . O 8 HOH A 33 433 569 HOH HOH . O 8 HOH A 34 434 548 HOH HOH . O 8 HOH A 35 435 566 HOH HOH . O 8 HOH A 36 436 554 HOH HOH . O 8 HOH A 37 437 585 HOH HOH . O 8 HOH A 38 438 530 HOH HOH . O 8 HOH A 39 439 562 HOH HOH . O 8 HOH A 40 440 536 HOH HOH . O 8 HOH A 41 441 551 HOH HOH . O 8 HOH A 42 442 574 HOH HOH . O 8 HOH A 43 443 552 HOH HOH . O 8 HOH A 44 444 540 HOH HOH . O 8 HOH A 45 445 535 HOH HOH . O 8 HOH A 46 446 507 HOH HOH . O 8 HOH A 47 447 509 HOH HOH . O 8 HOH A 48 448 581 HOH HOH . O 8 HOH A 49 449 573 HOH HOH . O 8 HOH A 50 450 511 HOH HOH . O 8 HOH A 51 451 516 HOH HOH . O 8 HOH A 52 452 521 HOH HOH . O 8 HOH A 53 453 534 HOH HOH . O 8 HOH A 54 454 568 HOH HOH . O 8 HOH A 55 455 550 HOH HOH . O 8 HOH A 56 456 586 HOH HOH . O 8 HOH A 57 457 513 HOH HOH . O 8 HOH A 58 458 502 HOH HOH . O 8 HOH A 59 459 520 HOH HOH . O 8 HOH A 60 460 565 HOH HOH . O 8 HOH A 61 461 564 HOH HOH . O 8 HOH A 62 462 570 HOH HOH . O 8 HOH A 63 463 519 HOH HOH . O 8 HOH A 64 464 546 HOH HOH . O 8 HOH A 65 465 518 HOH HOH . O 8 HOH A 66 466 524 HOH HOH . O 8 HOH A 67 467 605 HOH HOH . O 8 HOH A 68 468 584 HOH HOH . O 8 HOH A 69 469 526 HOH HOH . O 8 HOH A 70 470 538 HOH HOH . O 8 HOH A 71 471 544 HOH HOH . O 8 HOH A 72 472 582 HOH HOH . O 8 HOH A 73 473 529 HOH HOH . O 8 HOH A 74 474 587 HOH HOH . O 8 HOH A 75 475 556 HOH HOH . O 8 HOH A 76 476 563 HOH HOH . O 8 HOH A 77 477 547 HOH HOH . O 8 HOH A 78 478 576 HOH HOH . O 8 HOH A 79 479 584 HOH HOH . O 8 HOH A 80 480 537 HOH HOH . O 8 HOH A 81 481 567 HOH HOH . O 8 HOH A 82 482 555 HOH HOH . O 8 HOH A 83 483 579 HOH HOH . O 8 HOH A 84 484 580 HOH HOH . O 8 HOH A 85 485 588 HOH HOH . O 8 HOH A 86 486 578 HOH HOH . O 8 HOH A 87 487 542 HOH HOH . O 8 HOH A 88 488 535 HOH HOH . O 8 HOH A 89 489 590 HOH HOH . O 8 HOH A 90 490 543 HOH HOH . O 8 HOH A 91 491 575 HOH HOH . O 8 HOH A 92 492 589 HOH HOH . P 8 HOH B 1 401 599 HOH HOH . P 8 HOH B 2 402 533 HOH HOH . P 8 HOH B 3 403 510 HOH HOH . P 8 HOH B 4 404 588 HOH HOH . P 8 HOH B 5 405 543 HOH HOH . P 8 HOH B 6 406 511 HOH HOH . P 8 HOH B 7 407 521 HOH HOH . P 8 HOH B 8 408 517 HOH HOH . P 8 HOH B 9 409 549 HOH HOH . P 8 HOH B 10 410 590 HOH HOH . P 8 HOH B 11 411 502 HOH HOH . P 8 HOH B 12 412 558 HOH HOH . P 8 HOH B 13 413 508 HOH HOH . P 8 HOH B 14 414 503 HOH HOH . P 8 HOH B 15 415 528 HOH HOH . P 8 HOH B 16 416 530 HOH HOH . P 8 HOH B 17 417 507 HOH HOH . P 8 HOH B 18 418 561 HOH HOH . P 8 HOH B 19 419 524 HOH HOH . P 8 HOH B 20 420 591 HOH HOH . P 8 HOH B 21 421 520 HOH HOH . P 8 HOH B 22 422 519 HOH HOH . P 8 HOH B 23 423 572 HOH HOH . P 8 HOH B 24 424 525 HOH HOH . P 8 HOH B 25 425 501 HOH HOH . P 8 HOH B 26 426 526 HOH HOH . P 8 HOH B 27 427 523 HOH HOH . P 8 HOH B 28 428 583 HOH HOH . P 8 HOH B 29 429 541 HOH HOH . P 8 HOH B 30 430 505 HOH HOH . P 8 HOH B 31 431 553 HOH HOH . P 8 HOH B 32 432 540 HOH HOH . P 8 HOH B 33 433 569 HOH HOH . P 8 HOH B 34 434 602 HOH HOH . P 8 HOH B 35 435 518 HOH HOH . P 8 HOH B 36 436 555 HOH HOH . P 8 HOH B 37 437 560 HOH HOH . P 8 HOH B 38 438 515 HOH HOH . P 8 HOH B 39 439 529 HOH HOH . P 8 HOH B 40 440 536 HOH HOH . P 8 HOH B 41 441 580 HOH HOH . P 8 HOH B 42 442 513 HOH HOH . P 8 HOH B 43 443 522 HOH HOH . P 8 HOH B 44 444 516 HOH HOH . P 8 HOH B 45 445 537 HOH HOH . P 8 HOH B 46 446 556 HOH HOH . P 8 HOH B 47 447 538 HOH HOH . P 8 HOH B 48 448 608 HOH HOH . P 8 HOH B 49 449 552 HOH HOH . P 8 HOH B 50 450 560 HOH HOH . P 8 HOH B 51 451 571 HOH HOH . P 8 HOH B 52 452 532 HOH HOH . P 8 HOH B 53 453 504 HOH HOH . P 8 HOH B 54 454 506 HOH HOH . P 8 HOH B 55 455 562 HOH HOH . P 8 HOH B 56 456 546 HOH HOH . P 8 HOH B 57 457 559 HOH HOH . P 8 HOH B 58 458 606 HOH HOH . P 8 HOH B 59 459 589 HOH HOH . P 8 HOH B 60 460 509 HOH HOH . P 8 HOH B 61 461 539 HOH HOH . P 8 HOH B 62 462 574 HOH HOH . P 8 HOH B 63 463 565 HOH HOH . P 8 HOH B 64 464 564 HOH HOH . P 8 HOH B 65 465 557 HOH HOH . P 8 HOH B 66 466 577 HOH HOH . P 8 HOH B 67 467 563 HOH HOH . P 8 HOH B 68 468 600 HOH HOH . P 8 HOH B 69 469 512 HOH HOH . P 8 HOH B 70 470 548 HOH HOH . P 8 HOH B 71 471 585 HOH HOH . P 8 HOH B 72 472 547 HOH HOH . P 8 HOH B 73 473 533 HOH HOH . P 8 HOH B 74 474 514 HOH HOH . P 8 HOH B 75 475 545 HOH HOH . P 8 HOH B 76 476 601 HOH HOH . P 8 HOH B 77 477 579 HOH HOH . P 8 HOH B 78 478 593 HOH HOH . P 8 HOH B 79 479 551 HOH HOH . P 8 HOH B 80 480 603 HOH HOH . P 8 HOH B 81 481 582 HOH HOH . P 8 HOH B 82 482 612 HOH HOH . P 8 HOH B 83 483 604 HOH HOH . P 8 HOH B 84 484 586 HOH HOH . P 8 HOH B 85 485 568 HOH HOH . P 8 HOH B 86 486 596 HOH HOH . P 8 HOH B 87 487 542 HOH HOH . P 8 HOH B 88 488 578 HOH HOH . P 8 HOH B 89 489 554 HOH HOH . P 8 HOH B 90 490 534 HOH HOH . P 8 HOH B 91 491 527 HOH HOH . P 8 HOH B 92 492 581 HOH HOH . P 8 HOH B 93 493 544 HOH HOH . P 8 HOH B 94 494 570 HOH HOH . P 8 HOH B 95 495 598 HOH HOH . P 8 HOH B 96 496 566 HOH HOH . P 8 HOH B 97 497 587 HOH HOH . P 8 HOH B 98 498 592 HOH HOH . P 8 HOH B 99 499 597 HOH HOH . P 8 HOH B 100 500 576 HOH HOH . P 8 HOH B 101 501 550 HOH HOH . P 8 HOH B 102 502 531 HOH HOH . P 8 HOH B 103 503 573 HOH HOH . P 8 HOH B 104 504 611 HOH HOH . P 8 HOH B 105 505 575 HOH HOH . P 8 HOH B 106 506 610 HOH HOH . P 8 HOH B 107 507 594 HOH HOH . P 8 HOH B 108 508 595 HOH HOH . P 8 HOH B 109 509 609 HOH HOH . P 8 HOH B 110 510 607 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 5 _atom_site.Cartn_x -32.369 _atom_site.Cartn_y 14.146 _atom_site.Cartn_z -44.558 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 304 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #