data_7BXF
#
_model_server_result.job_id            '_rG4fckoKUb9PQh7qnme9g' 
_model_server_result.datetime_utc      '2024-12-27 05:59:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bxf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    7BXF 
#
_exptl.entry_id    7BXF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              140.908 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PRASEODYMIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.09 
_cell.angle_gamma         90 
_cell.entry_id            7BXF 
_cell.length_a            136.998 
_cell.length_b            81.229 
_cell.length_c            54.253 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BXF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 281 A ASP 280 1_555 E PR PR . C PR 201 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc2 A OD2 ASP 281 A ASP 280 1_555 E PR PR . C PR 201 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc3 A OE1 GLU 284 A GLU 283 1_555 F PR PR . C PR 202 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc4 A OE2 GLU 284 A GLU 283 1_555 F PR PR . C PR 202 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? 
metalc ? metalc5 A OE1 GLU 369 A GLU 368 1_555 D PR PR . A PR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc6 A OD1 ASP 373 A ASP 372 1_555 C PR PR . A PR 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? 
metalc ? metalc7 A OD1 ASP 373 A ASP 372 1_555 D PR PR . A PR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.395 ? 
metalc ? metalc8 A OD2 ASP 373 A ASP 372 1_555 D PR PR . A PR 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc9 A OE1 GLU 376 A GLU 375 1_555 C PR PR . A PR 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? 
metalc ? metalc10 A OE2 GLU 376 A GLU 375 1_555 C PR PR . A PR 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? 
metalc ? metalc11 C PR PR . A PR 501 1_555 G O HOH . A HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? 
metalc ? metalc12 C PR PR . A PR 501 1_555 G O HOH . A HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? 
metalc ? metalc13 C PR PR . A PR 501 1_554 B OE1 GLU 57 C GLU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc14 C PR PR . A PR 501 1_554 B OE2 GLU 57 C GLU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.465 ? 
metalc ? metalc15 D PR PR . A PR 502 1_555 G O HOH . A HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.315 ? 
metalc ? metalc16 D PR PR . A PR 502 2_656 B OD1 ASP 77 C ASP 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.466 ? 
metalc ? metalc17 B OE1 GLU 44 C GLU 51 1_555 E PR PR . C PR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.31 ? 
metalc ? metalc18 B OE2 GLU 47 C GLU 54 1_555 E PR PR . C PR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc19 B OE1 GLU 47 C GLU 54 1_555 F PR PR . C PR 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
#
_chem_comp.formula           'Pr 3' 
_chem_comp.formula_weight    140.908 
_chem_comp.id                PR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PRASEODYMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7BXF 
_atom_sites.fract_transf_matrix[1][1]    0.007299 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00065 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012311 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018505 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PR A 1 501 501 PR PR . 
D 3 PR A 1 502 502 PR PR . 
E 3 PR C 1 201 201 PR PR . 
F 3 PR C 1 202 202 PR PR . 
G 4 HOH A 1 601 601 HOH HOH . 
G 4 HOH A 2 602 602 HOH HOH . 
G 4 HOH A 3 603 603 HOH HOH . 
G 4 HOH A 4 604 604 HOH HOH . 
G 4 HOH A 5 605 605 HOH HOH . 
G 4 HOH A 6 606 606 HOH HOH . 
G 4 HOH A 7 607 607 HOH HOH . 
G 4 HOH A 8 608 608 HOH HOH . 
G 4 HOH A 9 609 609 HOH HOH . 
G 4 HOH A 10 610 610 HOH HOH . 
G 4 HOH A 11 611 611 HOH HOH . 
G 4 HOH A 12 612 612 HOH HOH . 
G 4 HOH A 13 613 613 HOH HOH . 
G 4 HOH A 14 614 614 HOH HOH . 
G 4 HOH A 15 615 615 HOH HOH . 
G 4 HOH A 16 616 616 HOH HOH . 
G 4 HOH A 17 617 617 HOH HOH . 
G 4 HOH A 18 618 618 HOH HOH . 
G 4 HOH A 19 619 619 HOH HOH . 
G 4 HOH A 20 620 620 HOH HOH . 
G 4 HOH A 21 621 621 HOH HOH . 
G 4 HOH A 22 622 622 HOH HOH . 
G 4 HOH A 23 623 623 HOH HOH . 
G 4 HOH A 24 624 624 HOH HOH . 
G 4 HOH A 25 625 625 HOH HOH . 
G 4 HOH A 26 626 626 HOH HOH . 
G 4 HOH A 27 627 627 HOH HOH . 
G 4 HOH A 28 628 628 HOH HOH . 
G 4 HOH A 29 629 629 HOH HOH . 
G 4 HOH A 30 630 630 HOH HOH . 
G 4 HOH A 31 631 631 HOH HOH . 
G 4 HOH A 32 632 632 HOH HOH . 
G 4 HOH A 33 633 633 HOH HOH . 
G 4 HOH A 34 634 634 HOH HOH . 
G 4 HOH A 35 635 635 HOH HOH . 
G 4 HOH A 36 636 636 HOH HOH . 
G 4 HOH A 37 637 637 HOH HOH . 
G 4 HOH A 38 638 638 HOH HOH . 
G 4 HOH A 39 639 639 HOH HOH . 
G 4 HOH A 40 640 640 HOH HOH . 
G 4 HOH A 41 641 641 HOH HOH . 
G 4 HOH A 42 642 642 HOH HOH . 
G 4 HOH A 43 643 643 HOH HOH . 
G 4 HOH A 44 644 644 HOH HOH . 
H 4 HOH C 1 301 301 HOH HOH . 
H 4 HOH C 2 302 302 HOH HOH . 
H 4 HOH C 3 303 303 HOH HOH . 
H 4 HOH C 4 304 304 HOH HOH . 
H 4 HOH C 5 305 305 HOH HOH . 
H 4 HOH C 6 306 306 HOH HOH . 
H 4 HOH C 7 307 307 HOH HOH . 
H 4 HOH C 8 308 308 HOH HOH . 
H 4 HOH C 9 309 309 HOH HOH . 
H 4 HOH C 10 310 310 HOH HOH . 
H 4 HOH C 11 311 311 HOH HOH . 
H 4 HOH C 12 312 312 HOH HOH . 
H 4 HOH C 13 313 313 HOH HOH . 
H 4 HOH C 14 314 314 HOH HOH . 
H 4 HOH C 15 315 315 HOH HOH . 
H 4 HOH C 16 316 316 HOH HOH . 
H 4 HOH C 17 317 317 HOH HOH . 
H 4 HOH C 18 318 318 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           PR 
_atom_site.label_atom_id         PR 
_atom_site.label_comp_id         PR 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               63.284 
_atom_site.Cartn_y               5.294 
_atom_site.Cartn_z               41.126 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        33.93 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          PR 
_atom_site.auth_comp_id          PR 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           447 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#