data_7BXO # _model_server_result.job_id c1F2kDyOBHpQsqF1F-lqTg _model_server_result.datetime_utc '2024-11-25 18:35:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bxo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 7BXO # _exptl.entry_id 7BXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.44 _cell.angle_gamma 90 _cell.entry_id 7BXO _cell.length_a 54.51 _cell.length_b 100.68 _cell.length_c 132.51 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 39 A ASP 39 1_555 J MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 K MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc3 A OD2 ASP 41 A ASP 41 1_555 J MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc4 A OD1 ASP 41 A ASP 41 1_555 K MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc5 A OD2 ASP 71 A ASP 71 1_555 K MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc6 I O2G ANP . A ANP 201 1_555 J MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc7 I O2B ANP . A ANP 201 1_555 J MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc8 I O2A ANP . A ANP 201 1_555 J MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc9 I O2A ANP . A ANP 201 1_555 K MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc10 E O ASP 39 E ASP 39 1_555 M MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc11 E OD2 ASP 39 E ASP 39 1_555 N MG MG . E MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc12 E OD2 ASP 41 E ASP 41 1_555 M MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc13 E OD1 ASP 41 E ASP 41 1_555 N MG MG . E MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc14 L O2G ANP . E ANP 201 1_555 M MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc15 L O2B ANP . E ANP 201 1_555 M MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc16 L O2A ANP . E ANP 201 1_555 M MG MG . E MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc17 L O2A ANP . E ANP 201 1_555 N MG MG . E MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7BXO _atom_sites.fract_transf_matrix[1][1] 0.018345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002071 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007595 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ANP A 1 201 2 ANP ANP . J 4 MG A 1 202 2 MG MG . K 4 MG A 1 203 4 MG MG . L 3 ANP E 1 201 1 ANP ANP . M 4 MG E 1 202 1 MG MG . N 4 MG E 1 203 3 MG MG . O 5 HOH B 1 201 11 HOH HOH . O 5 HOH B 2 202 14 HOH HOH . P 5 HOH D 1 201 1 HOH HOH . P 5 HOH D 2 202 12 HOH HOH . Q 5 HOH E 1 301 10 HOH HOH . Q 5 HOH E 2 302 4 HOH HOH . Q 5 HOH E 3 303 13 HOH HOH . Q 5 HOH E 4 304 9 HOH HOH . R 5 HOH F 1 201 8 HOH HOH . S 5 HOH G 1 201 5 HOH HOH . S 5 HOH G 2 202 3 HOH HOH . S 5 HOH G 3 203 2 HOH HOH . S 5 HOH G 4 204 7 HOH HOH . T 5 HOH H 1 201 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . I 3 18.92 20.383 43.799 1 99.11 ? PG ANP 201 A 1 HETATM 2 O O1G ANP . . . I 3 19.019 21.833 43.841 1 99.12 ? O1G ANP 201 A 1 HETATM 3 O O2G ANP . . . I 3 17.402 19.979 43.572 1 99.07 ? O2G ANP 201 A 1 HETATM 4 O O3G ANP . . . I 3 19.792 19.852 42.589 1 99.26 ? O3G ANP 201 A 1 HETATM 5 P PB ANP . . . I 3 18.669 19.169 46.527 1 98.81 ? PB ANP 201 A 1 HETATM 6 O O1B ANP . . . I 3 19.288 19.642 47.755 1 96.91 ? O1B ANP 201 A 1 HETATM 7 O O2B ANP . . . I 3 17.177 19.704 46.475 1 98.36 ? O2B ANP 201 A 1 HETATM 8 N N3B ANP . . . I 3 19.468 19.684 45.183 1 99.9 ? N3B ANP 201 A 1 HETATM 9 P PA ANP . . . I 3 17.784 16.484 45.661 1 102.5 ? PA ANP 201 A 1 HETATM 10 O O1A ANP . . . I 3 18.709 15.564 44.953 1 103.56 ? O1A ANP 201 A 1 HETATM 11 O O2A ANP . . . I 3 16.867 17.187 44.647 1 102.46 ? O2A ANP 201 A 1 HETATM 12 O O3A ANP . . . I 3 18.62 17.577 46.47 1 100.61 ? O3A ANP 201 A 1 HETATM 13 O O5' ANP . . . I 3 16.848 15.729 46.707 1 101.69 ? O5' ANP 201 A 1 HETATM 14 C C5' ANP . . . I 3 16.068 16.485 47.654 1 102.12 ? C5' ANP 201 A 1 HETATM 15 C C4' ANP . . . I 3 16.277 15.945 49.044 1 103.08 ? C4' ANP 201 A 1 HETATM 16 O O4' ANP . . . I 3 16.035 14.521 49.053 1 103.82 ? O4' ANP 201 A 1 HETATM 17 C C3' ANP . . . I 3 17.678 16.111 49.619 1 103.22 ? C3' ANP 201 A 1 HETATM 18 O O3' ANP . . . I 3 17.878 17.395 50.2 1 103.46 ? O3' ANP 201 A 1 HETATM 19 C C2' ANP . . . I 3 17.722 14.995 50.661 1 103.15 ? C2' ANP 201 A 1 HETATM 20 O O2' ANP . . . I 3 17.074 15.413 51.858 1 102.45 ? O2' ANP 201 A 1 HETATM 21 C C1' ANP . . . I 3 16.924 13.887 49.957 1 103.48 ? C1' ANP 201 A 1 HETATM 22 N N9 ANP . . . I 3 17.733 12.9 49.237 1 103.39 ? N9 ANP 201 A 1 HETATM 23 C C8 ANP . . . I 3 18.145 12.94 47.929 1 102.96 ? C8 ANP 201 A 1 HETATM 24 N N7 ANP . . . I 3 18.874 11.913 47.565 1 102.83 ? N7 ANP 201 A 1 HETATM 25 C C5 ANP . . . I 3 18.938 11.134 48.71 1 103.43 ? C5 ANP 201 A 1 HETATM 26 C C6 ANP . . . I 3 19.552 9.895 48.982 1 103.61 ? C6 ANP 201 A 1 HETATM 27 N N6 ANP . . . I 3 20.226 9.185 48.074 1 104.11 ? N6 ANP 201 A 1 HETATM 28 N N1 ANP . . . I 3 19.426 9.388 50.23 1 103.64 ? N1 ANP 201 A 1 HETATM 29 C C2 ANP . . . I 3 18.726 10.081 51.138 1 103.9 ? C2 ANP 201 A 1 HETATM 30 N N3 ANP . . . I 3 18.098 11.253 50.996 1 104.49 ? N3 ANP 201 A 1 HETATM 31 C C4 ANP . . . I 3 18.241 11.73 49.75 1 104.13 ? C4 ANP 201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #