data_7BXQ
#
_model_server_result.job_id            zOIPLZXtWyHE_H6wL1XGlQ 
_model_server_result.datetime_utc      '2024-12-01 00:15:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bxq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    7BXQ 
#
_exptl.entry_id    7BXQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              350.262 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-allothreonine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.99 
_cell.angle_gamma         90 
_cell.entry_id            7BXQ 
_cell.length_a            58.708 
_cell.length_b            101.657 
_cell.length_c            69.854 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BXQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C12 H19 N2 O8 P' 
_chem_comp.formula_weight    350.262 
_chem_comp.id                2BK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-allothreonine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OT C 2BK doub 1 n n 
O1P P 2BK doub 2 n n 
C O 2BK sing 3 n n 
C CA 2BK sing 4 n n 
O2P P 2BK sing 5 n n 
P O4P 2BK sing 6 n n 
P O3P 2BK sing 7 n n 
CA N 2BK sing 8 n n 
CA CB 2BK sing 9 n n 
N C4A 2BK sing 10 n n 
O4P C5A 2BK sing 11 n n 
C4A C4 2BK sing 12 n n 
O3 C3 2BK sing 13 n n 
CB OB 2BK sing 14 n n 
CB CG 2BK sing 15 n n 
C4 C3 2BK doub 16 n y 
C4 C5 2BK sing 17 n y 
C3 C2 2BK sing 18 n y 
C5A C5 2BK sing 19 n n 
C5 C6 2BK doub 20 n y 
C2 C2A 2BK sing 21 n n 
C2 N1 2BK doub 22 n y 
C6 N1 2BK sing 23 n y 
CG H1 2BK sing 24 n n 
CG H2 2BK sing 25 n n 
CG H3 2BK sing 26 n n 
C2A H4 2BK sing 27 n n 
C2A H5 2BK sing 28 n n 
C2A H6 2BK sing 29 n n 
O3 H7 2BK sing 30 n n 
C4A H8 2BK sing 31 n n 
C4A H9 2BK sing 32 n n 
C5A H10 2BK sing 33 n n 
C5A H11 2BK sing 34 n n 
C6 H12 2BK sing 35 n n 
O2P H13 2BK sing 36 n n 
O3P H14 2BK sing 37 n n 
N H15 2BK sing 38 n n 
CA H17 2BK sing 39 n n 
CB H18 2BK sing 40 n n 
OB H19 2BK sing 41 n n 
O H20 2BK sing 42 n n 
#
_atom_sites.entry_id                     7BXQ 
_atom_sites.fract_transf_matrix[1][1]    0.017033 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007227 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009837 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015551 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2BK A 1 501 1 2BK PLJ . 
D 2 2BK B 1 501 2 2BK PLJ . 
E 3 HOH A 1 601 134 HOH HOH . 
E 3 HOH A 2 602 177 HOH HOH . 
E 3 HOH A 3 603 136 HOH HOH . 
E 3 HOH A 4 604 76 HOH HOH . 
E 3 HOH A 5 605 42 HOH HOH . 
E 3 HOH A 6 606 132 HOH HOH . 
E 3 HOH A 7 607 13 HOH HOH . 
E 3 HOH A 8 608 15 HOH HOH . 
E 3 HOH A 9 609 95 HOH HOH . 
E 3 HOH A 10 610 199 HOH HOH . 
E 3 HOH A 11 611 92 HOH HOH . 
E 3 HOH A 12 612 103 HOH HOH . 
E 3 HOH A 13 613 75 HOH HOH . 
E 3 HOH A 14 614 186 HOH HOH . 
E 3 HOH A 15 615 119 HOH HOH . 
E 3 HOH A 16 616 150 HOH HOH . 
E 3 HOH A 17 617 144 HOH HOH . 
E 3 HOH A 18 618 99 HOH HOH . 
E 3 HOH A 19 619 116 HOH HOH . 
E 3 HOH A 20 620 47 HOH HOH . 
E 3 HOH A 21 621 54 HOH HOH . 
E 3 HOH A 22 622 171 HOH HOH . 
E 3 HOH A 23 623 137 HOH HOH . 
E 3 HOH A 24 624 43 HOH HOH . 
E 3 HOH A 25 625 60 HOH HOH . 
E 3 HOH A 26 626 8 HOH HOH . 
E 3 HOH A 27 627 16 HOH HOH . 
E 3 HOH A 28 628 175 HOH HOH . 
E 3 HOH A 29 629 4 HOH HOH . 
E 3 HOH A 30 630 162 HOH HOH . 
E 3 HOH A 31 631 109 HOH HOH . 
E 3 HOH A 32 632 59 HOH HOH . 
E 3 HOH A 33 633 14 HOH HOH . 
E 3 HOH A 34 634 107 HOH HOH . 
E 3 HOH A 35 635 121 HOH HOH . 
E 3 HOH A 36 636 155 HOH HOH . 
E 3 HOH A 37 637 9 HOH HOH . 
E 3 HOH A 38 638 133 HOH HOH . 
E 3 HOH A 39 639 27 HOH HOH . 
E 3 HOH A 40 640 48 HOH HOH . 
E 3 HOH A 41 641 120 HOH HOH . 
E 3 HOH A 42 642 96 HOH HOH . 
E 3 HOH A 43 643 23 HOH HOH . 
E 3 HOH A 44 644 55 HOH HOH . 
E 3 HOH A 45 645 49 HOH HOH . 
E 3 HOH A 46 646 129 HOH HOH . 
E 3 HOH A 47 647 86 HOH HOH . 
E 3 HOH A 48 648 18 HOH HOH . 
E 3 HOH A 49 649 10 HOH HOH . 
E 3 HOH A 50 650 35 HOH HOH . 
E 3 HOH A 51 651 39 HOH HOH . 
E 3 HOH A 52 652 130 HOH HOH . 
E 3 HOH A 53 653 74 HOH HOH . 
E 3 HOH A 54 654 21 HOH HOH . 
E 3 HOH A 55 655 11 HOH HOH . 
E 3 HOH A 56 656 159 HOH HOH . 
E 3 HOH A 57 657 28 HOH HOH . 
E 3 HOH A 58 658 113 HOH HOH . 
E 3 HOH A 59 659 135 HOH HOH . 
E 3 HOH A 60 660 142 HOH HOH . 
E 3 HOH A 61 661 102 HOH HOH . 
E 3 HOH A 62 662 108 HOH HOH . 
E 3 HOH A 63 663 157 HOH HOH . 
E 3 HOH A 64 664 36 HOH HOH . 
E 3 HOH A 65 665 52 HOH HOH . 
E 3 HOH A 66 666 123 HOH HOH . 
E 3 HOH A 67 667 58 HOH HOH . 
E 3 HOH A 68 668 176 HOH HOH . 
E 3 HOH A 69 669 122 HOH HOH . 
E 3 HOH A 70 670 189 HOH HOH . 
E 3 HOH A 71 671 53 HOH HOH . 
E 3 HOH A 72 672 66 HOH HOH . 
E 3 HOH A 73 673 12 HOH HOH . 
E 3 HOH A 74 674 200 HOH HOH . 
E 3 HOH A 75 675 1 HOH HOH . 
E 3 HOH A 76 676 165 HOH HOH . 
E 3 HOH A 77 677 63 HOH HOH . 
E 3 HOH A 78 678 68 HOH HOH . 
E 3 HOH A 79 679 78 HOH HOH . 
E 3 HOH A 80 680 101 HOH HOH . 
E 3 HOH A 81 681 87 HOH HOH . 
E 3 HOH A 82 682 33 HOH HOH . 
E 3 HOH A 83 683 128 HOH HOH . 
E 3 HOH A 84 684 93 HOH HOH . 
E 3 HOH A 85 685 31 HOH HOH . 
E 3 HOH A 86 686 73 HOH HOH . 
E 3 HOH A 87 687 164 HOH HOH . 
E 3 HOH A 88 688 97 HOH HOH . 
E 3 HOH A 89 689 173 HOH HOH . 
E 3 HOH A 90 690 141 HOH HOH . 
E 3 HOH A 91 691 181 HOH HOH . 
E 3 HOH A 92 692 196 HOH HOH . 
E 3 HOH A 93 693 118 HOH HOH . 
E 3 HOH A 94 694 131 HOH HOH . 
E 3 HOH A 95 695 151 HOH HOH . 
E 3 HOH A 96 696 41 HOH HOH . 
E 3 HOH A 97 697 125 HOH HOH . 
E 3 HOH A 98 698 166 HOH HOH . 
E 3 HOH A 99 699 190 HOH HOH . 
E 3 HOH A 100 700 170 HOH HOH . 
E 3 HOH A 101 701 161 HOH HOH . 
E 3 HOH A 102 702 112 HOH HOH . 
E 3 HOH A 103 703 193 HOH HOH . 
E 3 HOH A 104 704 106 HOH HOH . 
E 3 HOH A 105 705 172 HOH HOH . 
E 3 HOH A 106 706 146 HOH HOH . 
E 3 HOH A 107 707 124 HOH HOH . 
E 3 HOH A 108 708 114 HOH HOH . 
E 3 HOH A 109 709 152 HOH HOH . 
E 3 HOH A 110 710 158 HOH HOH . 
E 3 HOH A 111 711 154 HOH HOH . 
E 3 HOH A 112 712 149 HOH HOH . 
F 3 HOH B 1 601 91 HOH HOH . 
F 3 HOH B 2 602 139 HOH HOH . 
F 3 HOH B 3 603 5 HOH HOH . 
F 3 HOH B 4 604 153 HOH HOH . 
F 3 HOH B 5 605 56 HOH HOH . 
F 3 HOH B 6 606 180 HOH HOH . 
F 3 HOH B 7 607 147 HOH HOH . 
F 3 HOH B 8 608 100 HOH HOH . 
F 3 HOH B 9 609 182 HOH HOH . 
F 3 HOH B 10 610 80 HOH HOH . 
F 3 HOH B 11 611 26 HOH HOH . 
F 3 HOH B 12 612 169 HOH HOH . 
F 3 HOH B 13 613 45 HOH HOH . 
F 3 HOH B 14 614 167 HOH HOH . 
F 3 HOH B 15 615 25 HOH HOH . 
F 3 HOH B 16 616 71 HOH HOH . 
F 3 HOH B 17 617 104 HOH HOH . 
F 3 HOH B 18 618 30 HOH HOH . 
F 3 HOH B 19 619 156 HOH HOH . 
F 3 HOH B 20 620 77 HOH HOH . 
F 3 HOH B 21 621 69 HOH HOH . 
F 3 HOH B 22 622 7 HOH HOH . 
F 3 HOH B 23 623 17 HOH HOH . 
F 3 HOH B 24 624 24 HOH HOH . 
F 3 HOH B 25 625 188 HOH HOH . 
F 3 HOH B 26 626 44 HOH HOH . 
F 3 HOH B 27 627 38 HOH HOH . 
F 3 HOH B 28 628 163 HOH HOH . 
F 3 HOH B 29 629 3 HOH HOH . 
F 3 HOH B 30 630 19 HOH HOH . 
F 3 HOH B 31 631 57 HOH HOH . 
F 3 HOH B 32 632 90 HOH HOH . 
F 3 HOH B 33 633 88 HOH HOH . 
F 3 HOH B 34 634 84 HOH HOH . 
F 3 HOH B 35 635 168 HOH HOH . 
F 3 HOH B 36 636 22 HOH HOH . 
F 3 HOH B 37 637 98 HOH HOH . 
F 3 HOH B 38 638 191 HOH HOH . 
F 3 HOH B 39 639 138 HOH HOH . 
F 3 HOH B 40 640 2 HOH HOH . 
F 3 HOH B 41 641 65 HOH HOH . 
F 3 HOH B 42 642 37 HOH HOH . 
F 3 HOH B 43 643 94 HOH HOH . 
F 3 HOH B 44 644 105 HOH HOH . 
F 3 HOH B 45 645 184 HOH HOH . 
F 3 HOH B 46 646 127 HOH HOH . 
F 3 HOH B 47 647 83 HOH HOH . 
F 3 HOH B 48 648 20 HOH HOH . 
F 3 HOH B 49 649 29 HOH HOH . 
F 3 HOH B 50 650 61 HOH HOH . 
F 3 HOH B 51 651 126 HOH HOH . 
F 3 HOH B 52 652 6 HOH HOH . 
F 3 HOH B 53 653 185 HOH HOH . 
F 3 HOH B 54 654 82 HOH HOH . 
F 3 HOH B 55 655 110 HOH HOH . 
F 3 HOH B 56 656 62 HOH HOH . 
F 3 HOH B 57 657 89 HOH HOH . 
F 3 HOH B 58 658 50 HOH HOH . 
F 3 HOH B 59 659 70 HOH HOH . 
F 3 HOH B 60 660 40 HOH HOH . 
F 3 HOH B 61 661 179 HOH HOH . 
F 3 HOH B 62 662 140 HOH HOH . 
F 3 HOH B 63 663 72 HOH HOH . 
F 3 HOH B 64 664 192 HOH HOH . 
F 3 HOH B 65 665 46 HOH HOH . 
F 3 HOH B 66 666 79 HOH HOH . 
F 3 HOH B 67 667 32 HOH HOH . 
F 3 HOH B 68 668 81 HOH HOH . 
F 3 HOH B 69 669 64 HOH HOH . 
F 3 HOH B 70 670 194 HOH HOH . 
F 3 HOH B 71 671 67 HOH HOH . 
F 3 HOH B 72 672 178 HOH HOH . 
F 3 HOH B 73 673 183 HOH HOH . 
F 3 HOH B 74 674 115 HOH HOH . 
F 3 HOH B 75 675 160 HOH HOH . 
F 3 HOH B 76 676 117 HOH HOH . 
F 3 HOH B 77 677 148 HOH HOH . 
F 3 HOH B 78 678 174 HOH HOH . 
F 3 HOH B 79 679 197 HOH HOH . 
F 3 HOH B 80 680 51 HOH HOH . 
F 3 HOH B 81 681 34 HOH HOH . 
F 3 HOH B 82 682 145 HOH HOH . 
F 3 HOH B 83 683 187 HOH HOH . 
F 3 HOH B 84 684 195 HOH HOH . 
F 3 HOH B 85 685 85 HOH HOH . 
F 3 HOH B 86 686 143 HOH HOH . 
F 3 HOH B 87 687 111 HOH HOH . 
F 3 HOH B 88 688 198 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C 2BK . . . C 2 -10.345 0.477 22.039 1 33.05 ? C 2BK 501 A 1 
HETATM 2 C CG 2BK . . . C 2 -12.471 -1.352 22.097 1 31.65 ? CG 2BK 501 A 1 
HETATM 3 N N1 2BK . . . C 2 -4.782 -4.299 20.42 1 28.85 ? N1 2BK 501 A 1 
HETATM 4 C C2 2BK . . . C 2 -5.127 -3.555 21.51 1 34.44 ? C2 2BK 501 A 1 
HETATM 5 C C2A 2BK . . . C 2 -4.279 -3.64 22.757 1 30.86 ? C2A 2BK 501 A 1 
HETATM 6 C C3 2BK . . . C 2 -6.33 -2.665 21.483 1 31.77 ? C3 2BK 501 A 1 
HETATM 7 O O3 2BK . . . C 2 -6.698 -1.917 22.567 1 27.87 ? O3 2BK 501 A 1 
HETATM 8 C C4 2BK . . . C 2 -7.11 -2.64 20.221 1 28.43 ? C4 2BK 501 A 1 
HETATM 9 C C4A 2BK . . . C 2 -8.346 -1.803 20.05 1 27.83 ? C4A 2BK 501 A 1 
HETATM 10 C C5 2BK . . . C 2 -6.628 -3.5 19.114 1 28.48 ? C5 2BK 501 A 1 
HETATM 11 C C5A 2BK . . . C 2 -7.357 -3.518 17.801 1 31.83 ? C5A 2BK 501 A 1 
HETATM 12 C C6 2BK . . . C 2 -5.486 -4.283 19.275 1 32.52 ? C6 2BK 501 A 1 
HETATM 13 P P 2BK . . . C 2 -7.273 -2.157 15.545 1 32.66 ? P 2BK 501 A 1 
HETATM 14 O O1P 2BK . . . C 2 -6.131 -1.551 14.754 1 29.53 ? O1P 2BK 501 A 1 
HETATM 15 O O2P 2BK . . . C 2 -8.358 -1.133 15.728 1 31.56 ? O2P 2BK 501 A 1 
HETATM 16 O O3P 2BK . . . C 2 -7.822 -3.407 14.921 1 27.3 ? O3P 2BK 501 A 1 
HETATM 17 O O4P 2BK . . . C 2 -6.695 -2.545 16.999 1 33.13 ? O4P 2BK 501 A 1 
HETATM 18 N N 2BK . . . C 2 -8.765 -1.19 21.317 1 30.45 ? N 2BK 501 A 1 
HETATM 19 C CA 2BK . . . C 2 -10.152 -0.716 21.159 1 33.4 ? CA 2BK 501 A 1 
HETATM 20 C CB 2BK . . . C 2 -11.142 -1.847 21.502 1 38.77 ? CB 2BK 501 A 1 
HETATM 21 O OB 2BK . . . C 2 -10.503 -2.812 22.369 1 35.5 ? OB 2BK 501 A 1 
HETATM 22 O O 2BK . . . C 2 -9.74 0.444 23.115 1 38.11 ? O 2BK 501 A 1 
HETATM 23 O OT 2BK . . . C 2 -11.081 1.435 21.69 1 35.49 ? OT 2BK 501 A 1 
#
_model_server_stats.io_time_ms              100 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#