data_7BXR
#
_model_server_result.job_id            j2w1YWVJxl9Ob1Cbxxovqg 
_model_server_result.datetime_utc      '2024-10-19 11:27:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7bxr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    7BXR 
#
_exptl.entry_id    7BXR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              364.288 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S,3R)-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-oxidanyl-pentanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.911 
_cell.angle_gamma         90 
_cell.entry_id            7BXR 
_cell.length_a            58.728 
_cell.length_b            101.703 
_cell.length_c            69.78 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BXR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C13 H21 N2 O8 P' 
_chem_comp.formula_weight    364.288 
_chem_comp.id                F9X 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S,3R)-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-oxidanyl-pentanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3P P F9X doub 83 n n 
O2P P F9X sing 84 n n 
P O1P F9X sing 85 n n 
P O4P F9X sing 86 n n 
O4P C5A F9X sing 87 n n 
C5A C5 F9X sing 88 n n 
C5 C6 F9X doub 89 n y 
C5 C4 F9X sing 90 n y 
C6 N1 F9X sing 91 n y 
C4A C4 F9X sing 92 n n 
C4A N F9X sing 93 n n 
C4 C3 F9X doub 94 n y 
N1 C2 F9X doub 95 n y 
N CA F9X sing 96 n n 
CA C F9X sing 97 n n 
CA CB F9X sing 98 n n 
C3 C2 F9X sing 99 n y 
C3 O3 F9X sing 100 n n 
C2 C2A F9X sing 101 n n 
O C F9X doub 102 n n 
CG CB F9X sing 103 n n 
CG CD F9X sing 104 n n 
C OT F9X sing 105 n n 
CB OB F9X sing 106 n n 
O1P H1 F9X sing 107 n n 
O2P H2 F9X sing 108 n n 
CA H3 F9X sing 109 n n 
CB H4 F9X sing 110 n n 
CG H5 F9X sing 111 n n 
CG H6 F9X sing 112 n n 
N H7 F9X sing 113 n n 
OB H9 F9X sing 114 n n 
CD H10 F9X sing 115 n n 
CD H11 F9X sing 116 n n 
CD H12 F9X sing 117 n n 
C2A H13 F9X sing 118 n n 
C2A H14 F9X sing 119 n n 
C2A H15 F9X sing 120 n n 
C4A H16 F9X sing 121 n n 
C4A H17 F9X sing 122 n n 
C5A H18 F9X sing 123 n n 
C5A H19 F9X sing 124 n n 
C6 H20 F9X sing 125 n n 
O3 H21 F9X sing 126 n n 
OT H22 F9X sing 127 n n 
#
_atom_sites.entry_id                     7BXR 
_atom_sites.fract_transf_matrix[1][1]    0.017028 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007197 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009833 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015558 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 F9X A 1 501 1 F9X PLN . 
D 2 F9X B 1 501 2 F9X PLN . 
E 3 HOH A 1 601 118 HOH HOH . 
E 3 HOH A 2 602 185 HOH HOH . 
E 3 HOH A 3 603 165 HOH HOH . 
E 3 HOH A 4 604 147 HOH HOH . 
E 3 HOH A 5 605 120 HOH HOH . 
E 3 HOH A 6 606 168 HOH HOH . 
E 3 HOH A 7 607 149 HOH HOH . 
E 3 HOH A 8 608 122 HOH HOH . 
E 3 HOH A 9 609 146 HOH HOH . 
E 3 HOH A 10 610 205 HOH HOH . 
E 3 HOH A 11 611 195 HOH HOH . 
E 3 HOH A 12 612 69 HOH HOH . 
E 3 HOH A 13 613 90 HOH HOH . 
E 3 HOH A 14 614 56 HOH HOH . 
E 3 HOH A 15 615 139 HOH HOH . 
E 3 HOH A 16 616 200 HOH HOH . 
E 3 HOH A 17 617 5 HOH HOH . 
E 3 HOH A 18 618 36 HOH HOH . 
E 3 HOH A 19 619 143 HOH HOH . 
E 3 HOH A 20 620 25 HOH HOH . 
E 3 HOH A 21 621 61 HOH HOH . 
E 3 HOH A 22 622 159 HOH HOH . 
E 3 HOH A 23 623 63 HOH HOH . 
E 3 HOH A 24 624 193 HOH HOH . 
E 3 HOH A 25 625 37 HOH HOH . 
E 3 HOH A 26 626 142 HOH HOH . 
E 3 HOH A 27 627 17 HOH HOH . 
E 3 HOH A 28 628 26 HOH HOH . 
E 3 HOH A 29 629 73 HOH HOH . 
E 3 HOH A 30 630 140 HOH HOH . 
E 3 HOH A 31 631 15 HOH HOH . 
E 3 HOH A 32 632 27 HOH HOH . 
E 3 HOH A 33 633 179 HOH HOH . 
E 3 HOH A 34 634 65 HOH HOH . 
E 3 HOH A 35 635 52 HOH HOH . 
E 3 HOH A 36 636 1 HOH HOH . 
E 3 HOH A 37 637 38 HOH HOH . 
E 3 HOH A 38 638 3 HOH HOH . 
E 3 HOH A 39 639 70 HOH HOH . 
E 3 HOH A 40 640 54 HOH HOH . 
E 3 HOH A 41 641 121 HOH HOH . 
E 3 HOH A 42 642 23 HOH HOH . 
E 3 HOH A 43 643 67 HOH HOH . 
E 3 HOH A 44 644 12 HOH HOH . 
E 3 HOH A 45 645 85 HOH HOH . 
E 3 HOH A 46 646 44 HOH HOH . 
E 3 HOH A 47 647 16 HOH HOH . 
E 3 HOH A 48 648 136 HOH HOH . 
E 3 HOH A 49 649 167 HOH HOH . 
E 3 HOH A 50 650 133 HOH HOH . 
E 3 HOH A 51 651 115 HOH HOH . 
E 3 HOH A 52 652 68 HOH HOH . 
E 3 HOH A 53 653 163 HOH HOH . 
E 3 HOH A 54 654 18 HOH HOH . 
E 3 HOH A 55 655 21 HOH HOH . 
E 3 HOH A 56 656 60 HOH HOH . 
E 3 HOH A 57 657 130 HOH HOH . 
E 3 HOH A 58 658 51 HOH HOH . 
E 3 HOH A 59 659 40 HOH HOH . 
E 3 HOH A 60 660 84 HOH HOH . 
E 3 HOH A 61 661 110 HOH HOH . 
E 3 HOH A 62 662 74 HOH HOH . 
E 3 HOH A 63 663 78 HOH HOH . 
E 3 HOH A 64 664 66 HOH HOH . 
E 3 HOH A 65 665 80 HOH HOH . 
E 3 HOH A 66 666 19 HOH HOH . 
E 3 HOH A 67 667 178 HOH HOH . 
E 3 HOH A 68 668 172 HOH HOH . 
E 3 HOH A 69 669 154 HOH HOH . 
E 3 HOH A 70 670 114 HOH HOH . 
E 3 HOH A 71 671 144 HOH HOH . 
E 3 HOH A 72 672 108 HOH HOH . 
E 3 HOH A 73 673 76 HOH HOH . 
E 3 HOH A 74 674 170 HOH HOH . 
E 3 HOH A 75 675 190 HOH HOH . 
E 3 HOH A 76 676 64 HOH HOH . 
E 3 HOH A 77 677 197 HOH HOH . 
E 3 HOH A 78 678 184 HOH HOH . 
E 3 HOH A 79 679 204 HOH HOH . 
E 3 HOH A 80 680 171 HOH HOH . 
E 3 HOH A 81 681 182 HOH HOH . 
E 3 HOH A 82 682 192 HOH HOH . 
E 3 HOH A 83 683 135 HOH HOH . 
E 3 HOH A 84 684 203 HOH HOH . 
E 3 HOH A 85 685 59 HOH HOH . 
E 3 HOH A 86 686 156 HOH HOH . 
E 3 HOH A 87 687 166 HOH HOH . 
E 3 HOH A 88 688 132 HOH HOH . 
E 3 HOH A 89 689 186 HOH HOH . 
E 3 HOH A 90 690 72 HOH HOH . 
E 3 HOH A 91 691 155 HOH HOH . 
E 3 HOH A 92 692 153 HOH HOH . 
E 3 HOH A 93 693 201 HOH HOH . 
E 3 HOH A 94 694 180 HOH HOH . 
E 3 HOH A 95 695 129 HOH HOH . 
E 3 HOH A 96 696 213 HOH HOH . 
E 3 HOH A 97 697 176 HOH HOH . 
E 3 HOH A 98 698 126 HOH HOH . 
E 3 HOH A 99 699 209 HOH HOH . 
E 3 HOH A 100 700 214 HOH HOH . 
E 3 HOH A 101 701 137 HOH HOH . 
E 3 HOH A 102 702 194 HOH HOH . 
E 3 HOH A 103 703 152 HOH HOH . 
E 3 HOH A 104 704 196 HOH HOH . 
E 3 HOH A 105 705 113 HOH HOH . 
E 3 HOH A 106 706 125 HOH HOH . 
E 3 HOH A 107 707 169 HOH HOH . 
E 3 HOH A 108 708 131 HOH HOH . 
E 3 HOH A 109 709 173 HOH HOH . 
F 3 HOH B 1 601 102 HOH HOH . 
F 3 HOH B 2 602 86 HOH HOH . 
F 3 HOH B 3 603 164 HOH HOH . 
F 3 HOH B 4 604 99 HOH HOH . 
F 3 HOH B 5 605 187 HOH HOH . 
F 3 HOH B 6 606 75 HOH HOH . 
F 3 HOH B 7 607 105 HOH HOH . 
F 3 HOH B 8 608 7 HOH HOH . 
F 3 HOH B 9 609 47 HOH HOH . 
F 3 HOH B 10 610 158 HOH HOH . 
F 3 HOH B 11 611 157 HOH HOH . 
F 3 HOH B 12 612 45 HOH HOH . 
F 3 HOH B 13 613 33 HOH HOH . 
F 3 HOH B 14 614 43 HOH HOH . 
F 3 HOH B 15 615 141 HOH HOH . 
F 3 HOH B 16 616 50 HOH HOH . 
F 3 HOH B 17 617 104 HOH HOH . 
F 3 HOH B 18 618 88 HOH HOH . 
F 3 HOH B 19 619 111 HOH HOH . 
F 3 HOH B 20 620 101 HOH HOH . 
F 3 HOH B 21 621 211 HOH HOH . 
F 3 HOH B 22 622 13 HOH HOH . 
F 3 HOH B 23 623 145 HOH HOH . 
F 3 HOH B 24 624 58 HOH HOH . 
F 3 HOH B 25 625 94 HOH HOH . 
F 3 HOH B 26 626 24 HOH HOH . 
F 3 HOH B 27 627 4 HOH HOH . 
F 3 HOH B 28 628 134 HOH HOH . 
F 3 HOH B 29 629 55 HOH HOH . 
F 3 HOH B 30 630 22 HOH HOH . 
F 3 HOH B 31 631 117 HOH HOH . 
F 3 HOH B 32 632 87 HOH HOH . 
F 3 HOH B 33 633 28 HOH HOH . 
F 3 HOH B 34 634 123 HOH HOH . 
F 3 HOH B 35 635 57 HOH HOH . 
F 3 HOH B 36 636 46 HOH HOH . 
F 3 HOH B 37 637 83 HOH HOH . 
F 3 HOH B 38 638 89 HOH HOH . 
F 3 HOH B 39 639 77 HOH HOH . 
F 3 HOH B 40 640 151 HOH HOH . 
F 3 HOH B 41 641 10 HOH HOH . 
F 3 HOH B 42 642 29 HOH HOH . 
F 3 HOH B 43 643 82 HOH HOH . 
F 3 HOH B 44 644 31 HOH HOH . 
F 3 HOH B 45 645 14 HOH HOH . 
F 3 HOH B 46 646 35 HOH HOH . 
F 3 HOH B 47 647 9 HOH HOH . 
F 3 HOH B 48 648 48 HOH HOH . 
F 3 HOH B 49 649 81 HOH HOH . 
F 3 HOH B 50 650 161 HOH HOH . 
F 3 HOH B 51 651 103 HOH HOH . 
F 3 HOH B 52 652 32 HOH HOH . 
F 3 HOH B 53 653 11 HOH HOH . 
F 3 HOH B 54 654 34 HOH HOH . 
F 3 HOH B 55 655 92 HOH HOH . 
F 3 HOH B 56 656 42 HOH HOH . 
F 3 HOH B 57 657 100 HOH HOH . 
F 3 HOH B 58 658 124 HOH HOH . 
F 3 HOH B 59 659 215 HOH HOH . 
F 3 HOH B 60 660 39 HOH HOH . 
F 3 HOH B 61 661 98 HOH HOH . 
F 3 HOH B 62 662 174 HOH HOH . 
F 3 HOH B 63 663 79 HOH HOH . 
F 3 HOH B 64 664 206 HOH HOH . 
F 3 HOH B 65 665 6 HOH HOH . 
F 3 HOH B 66 666 53 HOH HOH . 
F 3 HOH B 67 667 106 HOH HOH . 
F 3 HOH B 68 668 210 HOH HOH . 
F 3 HOH B 69 669 207 HOH HOH . 
F 3 HOH B 70 670 150 HOH HOH . 
F 3 HOH B 71 671 162 HOH HOH . 
F 3 HOH B 72 672 138 HOH HOH . 
F 3 HOH B 73 673 177 HOH HOH . 
F 3 HOH B 74 674 128 HOH HOH . 
F 3 HOH B 75 675 181 HOH HOH . 
F 3 HOH B 76 676 49 HOH HOH . 
F 3 HOH B 77 677 41 HOH HOH . 
F 3 HOH B 78 678 183 HOH HOH . 
F 3 HOH B 79 679 148 HOH HOH . 
F 3 HOH B 80 680 2 HOH HOH . 
F 3 HOH B 81 681 189 HOH HOH . 
F 3 HOH B 82 682 116 HOH HOH . 
F 3 HOH B 83 683 175 HOH HOH . 
F 3 HOH B 84 684 160 HOH HOH . 
F 3 HOH B 85 685 62 HOH HOH . 
F 3 HOH B 86 686 93 HOH HOH . 
F 3 HOH B 87 687 127 HOH HOH . 
F 3 HOH B 88 688 202 HOH HOH . 
F 3 HOH B 89 689 95 HOH HOH . 
F 3 HOH B 90 690 96 HOH HOH . 
F 3 HOH B 91 691 208 HOH HOH . 
F 3 HOH B 92 692 112 HOH HOH . 
F 3 HOH B 93 693 20 HOH HOH . 
F 3 HOH B 94 694 191 HOH HOH . 
F 3 HOH B 95 695 91 HOH HOH . 
F 3 HOH B 96 696 30 HOH HOH . 
F 3 HOH B 97 697 8 HOH HOH . 
F 3 HOH B 98 698 119 HOH HOH . 
F 3 HOH B 99 699 199 HOH HOH . 
F 3 HOH B 100 700 188 HOH HOH . 
F 3 HOH B 101 701 97 HOH HOH . 
F 3 HOH B 102 702 109 HOH HOH . 
F 3 HOH B 103 703 198 HOH HOH . 
F 3 HOH B 104 704 212 HOH HOH . 
F 3 HOH B 105 705 71 HOH HOH . 
F 3 HOH B 106 706 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P F9X . . . D 2 -10.23 -8.717 2.37 1 23.61 ? P F9X 501 B 1 
HETATM 2 O O1P F9X . . . D 2 -9.164 -8.245 1.403 1 20.87 ? O1P F9X 501 B 1 
HETATM 3 O O2P F9X . . . D 2 -9.662 -8.849 3.764 1 24.79 ? O2P F9X 501 B 1 
HETATM 4 O O3P F9X . . . D 2 -11.442 -7.817 2.357 1 24.65 ? O3P F9X 501 B 1 
HETATM 5 N N1 F9X . . . D 2 -12.61 -13.879 1.239 1 27.18 ? N1 F9X 501 B 1 
HETATM 6 C CA F9X . . . D 2 -7.238 -12.867 -1.931 1 26.67 ? CA F9X 501 B 1 
HETATM 7 C C F9X . . . D 2 -7.52 -12.528 -3.35 1 26.6 ? C F9X 501 B 1 
HETATM 8 O O F9X . . . D 2 -8.307 -13.293 -3.963 1 25.03 ? O F9X 501 B 1 
HETATM 9 C CB F9X . . . D 2 -6.393 -14.117 -1.917 1 27.61 ? CB F9X 501 B 1 
HETATM 10 C CG F9X . . . D 2 -4.959 -13.84 -1.493 1 28.28 ? CG F9X 501 B 1 
HETATM 11 N N F9X . . . D 2 -8.463 -13.114 -1.177 1 23.69 ? N F9X 501 B 1 
HETATM 12 O OB F9X . . . D 2 -7.086 -14.991 -1.023 1 28.1 ? OB F9X 501 B 1 
HETATM 13 C CD F9X . . . D 2 -3.932 -14.424 -2.434 1 21.27 ? CD F9X 501 B 1 
HETATM 14 C C2 F9X . . . D 2 -12.217 -14.271 0.006 1 27.9 ? C2 F9X 501 B 1 
HETATM 15 C C2A F9X . . . D 2 -13.024 -15.301 -0.756 1 25.47 ? C2A F9X 501 B 1 
HETATM 16 C C3 F9X . . . D 2 -10.993 -13.68 -0.593 1 23.21 ? C3 F9X 501 B 1 
HETATM 17 C C4 F9X . . . D 2 -10.249 -12.667 0.199 1 23.97 ? C4 F9X 501 B 1 
HETATM 18 C C4A F9X . . . D 2 -8.983 -12.031 -0.334 1 25.44 ? C4A F9X 501 B 1 
HETATM 19 C C5 F9X . . . D 2 -10.79 -12.354 1.534 1 24.12 ? C5 F9X 501 B 1 
HETATM 20 C C5A F9X . . . D 2 -10.122 -11.333 2.385 1 25.86 ? C5A F9X 501 B 1 
HETATM 21 C C6 F9X . . . D 2 -11.955 -12.965 1.977 1 26.63 ? C6 F9X 501 B 1 
HETATM 22 O O3 F9X . . . D 2 -10.586 -14.082 -1.824 1 21.54 ? O3 F9X 501 B 1 
HETATM 23 O O4P F9X . . . D 2 -10.756 -10.155 1.914 1 23.61 ? O4P F9X 501 B 1 
HETATM 24 O OT F9X . . . D 2 -6.922 -11.545 -3.843 1 27.04 ? OT F9X 501 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           24 
#