data_7BY9
#
_model_server_result.job_id            cvL9YdIbG5h6GrgzJFQF1A 
_model_server_result.datetime_utc      '2025-02-05 17:47:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7by9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":400}' 
#
_entry.id    7BY9 
#
_exptl.entry_id    7BY9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.42 
_cell.angle_gamma         90 
_cell.entry_id            7BY9 
_cell.length_a            63.156 
_cell.length_b            83.239 
_cell.length_c            119.477 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7BY9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     7BY9 
_atom_sites.fract_transf_matrix[1][1]    0.015834 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000946 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012014 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008385 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 400 400 NAD NAD . 
F 3 OAA A 1 401 401 OAA OAA . 
G 2 NAD B 1 400 400 NAD NAD . 
H 3 OAA B 1 401 401 OAA OAA . 
I 2 NAD C 1 400 400 NAD NAD . 
J 3 OAA C 1 401 401 OAA OAA . 
K 2 NAD D 1 400 400 NAD NAD . 
L 3 OAA D 1 401 401 OAA OAA . 
M 4 HOH A 1 501 20 HOH HOH . 
M 4 HOH A 2 502 25 HOH HOH . 
M 4 HOH A 3 503 15 HOH HOH . 
M 4 HOH A 4 504 22 HOH HOH . 
M 4 HOH A 5 505 1 HOH HOH . 
M 4 HOH A 6 506 23 HOH HOH . 
M 4 HOH A 7 507 12 HOH HOH . 
M 4 HOH A 8 508 18 HOH HOH . 
M 4 HOH A 9 509 8 HOH HOH . 
M 4 HOH A 10 510 24 HOH HOH . 
N 4 HOH B 1 501 29 HOH HOH . 
N 4 HOH B 2 502 26 HOH HOH . 
N 4 HOH B 3 503 21 HOH HOH . 
N 4 HOH B 4 504 17 HOH HOH . 
N 4 HOH B 5 505 28 HOH HOH . 
N 4 HOH B 6 506 3 HOH HOH . 
N 4 HOH B 7 507 6 HOH HOH . 
N 4 HOH B 8 508 27 HOH HOH . 
O 4 HOH C 1 501 2 HOH HOH . 
O 4 HOH C 2 502 13 HOH HOH . 
P 4 HOH D 1 501 30 HOH HOH . 
P 4 HOH D 2 502 34 HOH HOH . 
P 4 HOH D 3 503 5 HOH HOH . 
P 4 HOH D 4 504 4 HOH HOH . 
P 4 HOH D 5 505 16 HOH HOH . 
P 4 HOH D 6 506 7 HOH HOH . 
P 4 HOH D 7 507 10 HOH HOH . 
P 4 HOH D 8 508 9 HOH HOH . 
P 4 HOH D 9 509 32 HOH HOH . 
P 4 HOH D 10 510 31 HOH HOH . 
P 4 HOH D 11 511 11 HOH HOH . 
P 4 HOH D 12 512 14 HOH HOH . 
P 4 HOH D 13 513 19 HOH HOH . 
P 4 HOH D 14 514 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . K 2 14.455 -13.744 0.351 1 43.05 ? PA NAD 400 D 1 
HETATM 2 O O1A NAD . . . K 2 14.2 -13.639 -1.09 1 35.65 ? O1A NAD 400 D 1 
HETATM 3 O O2A NAD . . . K 2 15.46 -14.744 0.865 1 42.03 ? O2A NAD 400 D 1 
HETATM 4 O O5B NAD . . . K 2 13.035 -13.947 1.118 1 39.29 ? O5B NAD 400 D 1 
HETATM 5 C C5B NAD . . . K 2 11.771 -13.608 0.463 1 33.57 ? C5B NAD 400 D 1 
HETATM 6 C C4B NAD . . . K 2 10.939 -14.84 0.176 1 34.27 ? C4B NAD 400 D 1 
HETATM 7 O O4B NAD . . . K 2 9.641 -14.434 -0.332 1 34.41 ? O4B NAD 400 D 1 
HETATM 8 C C3B NAD . . . K 2 11.449 -15.875 -0.857 1 30.12 ? C3B NAD 400 D 1 
HETATM 9 O O3B NAD . . . K 2 11.66 -17.125 -0.206 1 31.51 ? O3B NAD 400 D 1 
HETATM 10 C C2B NAD . . . K 2 10.297 -16.011 -1.868 1 36.5 ? C2B NAD 400 D 1 
HETATM 11 O O2B NAD . . . K 2 9.876 -17.272 -2.358 1 34.13 ? O2B NAD 400 D 1 
HETATM 12 C C1B NAD . . . K 2 9.119 -15.545 -1.017 1 38.54 ? C1B NAD 400 D 1 
HETATM 13 N N9A NAD . . . K 2 7.942 -15.189 -1.813 1 44.46 ? N9A NAD 400 D 1 
HETATM 14 C C8A NAD . . . K 2 7.922 -14.581 -3.047 1 44.55 ? C8A NAD 400 D 1 
HETATM 15 N N7A NAD . . . K 2 6.717 -14.4 -3.527 1 41.63 ? N7A NAD 400 D 1 
HETATM 16 C C5A NAD . . . K 2 5.884 -14.955 -2.572 1 49.03 ? C5A NAD 400 D 1 
HETATM 17 C C6A NAD . . . K 2 4.481 -15.092 -2.505 1 52.14 ? C6A NAD 400 D 1 
HETATM 18 N N6A NAD . . . K 2 3.65 -14.684 -3.466 1 54.66 ? N6A NAD 400 D 1 
HETATM 19 N N1A NAD . . . K 2 3.967 -15.686 -1.402 1 41.05 ? N1A NAD 400 D 1 
HETATM 20 C C2A NAD . . . K 2 4.815 -16.134 -0.469 1 50.38 ? C2A NAD 400 D 1 
HETATM 21 N N3A NAD . . . K 2 6.145 -16.056 -0.424 1 46.72 ? N3A NAD 400 D 1 
HETATM 22 C C4A NAD . . . K 2 6.628 -15.461 -1.52 1 43.33 ? C4A NAD 400 D 1 
HETATM 23 O O3 NAD . . . K 2 14.94 -12.323 0.934 1 39.38 ? O3 NAD 400 D 1 
HETATM 24 P PN NAD . . . K 2 14.646 -11.651 2.346 1 36.71 ? PN NAD 400 D 1 
HETATM 25 O O1N NAD . . . K 2 15.962 -11.302 2.943 1 41.1 ? O1N NAD 400 D 1 
HETATM 26 O O2N NAD . . . K 2 13.735 -12.536 3.128 1 38.52 ? O2N NAD 400 D 1 
HETATM 27 O O5D NAD . . . K 2 13.848 -10.329 1.852 1 36.51 ? O5D NAD 400 D 1 
HETATM 28 C C5D NAD . . . K 2 12.508 -10.127 2.328 1 35.02 ? C5D NAD 400 D 1 
HETATM 29 C C4D NAD . . . K 2 11.897 -8.863 1.767 1 35.16 ? C4D NAD 400 D 1 
HETATM 30 O O4D NAD . . . K 2 11.866 -7.847 2.785 1 36.73 ? O4D NAD 400 D 1 
HETATM 31 C C3D NAD . . . K 2 12.587 -8.212 0.564 1 34.75 ? C3D NAD 400 D 1 
HETATM 32 O O3D NAD . . . K 2 11.557 -7.587 -0.175 1 37.44 ? O3D NAD 400 D 1 
HETATM 33 C C2D NAD . . . K 2 13.551 -7.22 1.202 1 32.65 ? C2D NAD 400 D 1 
HETATM 34 O O2D NAD . . . K 2 13.953 -6.182 0.309 1 32.16 ? O2D NAD 400 D 1 
HETATM 35 C C1D NAD . . . K 2 12.707 -6.731 2.375 1 35.33 ? C1D NAD 400 D 1 
HETATM 36 N N1N NAD . . . K 2 13.526 -6.291 3.54 1 34.33 ? N1N NAD 400 D 1 
HETATM 37 C C2N NAD . . . K 2 13.273 -5.042 4.15 1 32.76 ? C2N NAD 400 D 1 
HETATM 38 C C3N NAD . . . K 2 13.863 -4.757 5.378 1 30.58 ? C3N NAD 400 D 1 
HETATM 39 C C7N NAD . . . K 2 13.28 -3.715 6.304 1 32.03 ? C7N NAD 400 D 1 
HETATM 40 O O7N NAD . . . K 2 13.995 -3.221 7.179 1 29.84 ? O7N NAD 400 D 1 
HETATM 41 N N7N NAD . . . K 2 12.019 -3.339 6.106 1 30.97 ? N7N NAD 400 D 1 
HETATM 42 C C4N NAD . . . K 2 15.016 -5.465 5.724 1 30.74 ? C4N NAD 400 D 1 
HETATM 43 C C5N NAD . . . K 2 15.324 -6.636 5.078 1 28.72 ? C5N NAD 400 D 1 
HETATM 44 C C6N NAD . . . K 2 14.529 -7.075 4.029 1 30.41 ? C6N NAD 400 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#