data_7BYI # _model_server_result.job_id 2zGf_JV1z0do11a9vByp4A _model_server_result.datetime_utc '2025-01-10 09:15:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7byi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 7BYI # _exptl.entry_id 7BYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7BYI _cell.length_a 158.62 _cell.length_b 158.62 _cell.length_c 209.427 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 332 n n C1 C2 PEG sing 333 n n C1 H11 PEG sing 334 n n C1 H12 PEG sing 335 n n O1 HO1 PEG sing 336 n n C2 O2 PEG sing 337 n n C2 H21 PEG sing 338 n n C2 H22 PEG sing 339 n n O2 C3 PEG sing 340 n n C3 C4 PEG sing 341 n n C3 H31 PEG sing 342 n n C3 H32 PEG sing 343 n n C4 O4 PEG sing 344 n n C4 H41 PEG sing 345 n n C4 H42 PEG sing 346 n n O4 HO4 PEG sing 347 n n # _atom_sites.entry_id 7BYI _atom_sites.fract_transf_matrix[1][1] 0.006304 _atom_sites.fract_transf_matrix[1][2] 0.00364 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 701 701 PO4 PO4 . D 4 PEG A 1 702 801 PEG PEG . E 5 CBO B 1 601 601 CBO DRG . F 5 CBO B 1 602 601 CBO DRG . G 3 PO4 B 1 603 701 PO4 PO4 . H 6 HOH A 1 801 35 HOH HOH . H 6 HOH A 2 802 23 HOH HOH . H 6 HOH A 3 803 7 HOH HOH . H 6 HOH A 4 804 45 HOH HOH . H 6 HOH A 5 805 5 HOH HOH . H 6 HOH A 6 806 29 HOH HOH . H 6 HOH A 7 807 18 HOH HOH . H 6 HOH A 8 808 49 HOH HOH . H 6 HOH A 9 809 8 HOH HOH . H 6 HOH A 10 810 21 HOH HOH . H 6 HOH A 11 811 16 HOH HOH . H 6 HOH A 12 812 72 HOH HOH . H 6 HOH A 13 813 33 HOH HOH . H 6 HOH A 14 814 20 HOH HOH . H 6 HOH A 15 815 57 HOH HOH . H 6 HOH A 16 816 2 HOH HOH . H 6 HOH A 17 817 22 HOH HOH . H 6 HOH A 18 818 32 HOH HOH . H 6 HOH A 19 819 30 HOH HOH . H 6 HOH A 20 820 12 HOH HOH . H 6 HOH A 21 821 52 HOH HOH . H 6 HOH A 22 822 6 HOH HOH . H 6 HOH A 23 823 31 HOH HOH . H 6 HOH A 24 824 25 HOH HOH . H 6 HOH A 25 825 74 HOH HOH . H 6 HOH A 26 826 64 HOH HOH . H 6 HOH A 27 827 54 HOH HOH . H 6 HOH A 28 828 38 HOH HOH . H 6 HOH A 29 829 41 HOH HOH . H 6 HOH A 30 830 75 HOH HOH . H 6 HOH A 31 831 71 HOH HOH . H 6 HOH A 32 832 73 HOH HOH . H 6 HOH A 33 833 55 HOH HOH . H 6 HOH A 34 834 34 HOH HOH . H 6 HOH A 35 835 67 HOH HOH . I 6 HOH B 1 701 4 HOH HOH . I 6 HOH B 2 702 48 HOH HOH . I 6 HOH B 3 703 9 HOH HOH . I 6 HOH B 4 704 43 HOH HOH . I 6 HOH B 5 705 50 HOH HOH . I 6 HOH B 6 706 46 HOH HOH . I 6 HOH B 7 707 37 HOH HOH . I 6 HOH B 8 708 10 HOH HOH . I 6 HOH B 9 709 44 HOH HOH . I 6 HOH B 10 710 3 HOH HOH . I 6 HOH B 11 711 15 HOH HOH . I 6 HOH B 12 712 26 HOH HOH . I 6 HOH B 13 713 47 HOH HOH . I 6 HOH B 14 714 51 HOH HOH . I 6 HOH B 15 715 11 HOH HOH . I 6 HOH B 16 716 56 HOH HOH . I 6 HOH B 17 717 24 HOH HOH . I 6 HOH B 18 718 39 HOH HOH . I 6 HOH B 19 719 19 HOH HOH . I 6 HOH B 20 720 42 HOH HOH . I 6 HOH B 21 721 40 HOH HOH . I 6 HOH B 22 722 14 HOH HOH . I 6 HOH B 23 723 17 HOH HOH . I 6 HOH B 24 724 13 HOH HOH . I 6 HOH B 25 725 1 HOH HOH . I 6 HOH B 26 726 28 HOH HOH . I 6 HOH B 27 727 36 HOH HOH . I 6 HOH B 28 728 70 HOH HOH . I 6 HOH B 29 729 58 HOH HOH . I 6 HOH B 30 730 78 HOH HOH . I 6 HOH B 31 731 65 HOH HOH . I 6 HOH B 32 732 53 HOH HOH . I 6 HOH B 33 733 59 HOH HOH . I 6 HOH B 34 734 27 HOH HOH . I 6 HOH B 35 735 76 HOH HOH . I 6 HOH B 36 736 77 HOH HOH . I 6 HOH B 37 737 66 HOH HOH . I 6 HOH B 38 738 69 HOH HOH . I 6 HOH B 39 739 60 HOH HOH . I 6 HOH B 40 740 62 HOH HOH . I 6 HOH B 41 741 68 HOH HOH . I 6 HOH B 42 742 61 HOH HOH . I 6 HOH B 43 743 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 4 61.518 -69.986 13.354 1 88.18 ? C1 PEG 702 A 1 HETATM 2 O O1 PEG . . . D 4 62.17 -68.856 12.82 1 75.17 ? O1 PEG 702 A 1 HETATM 3 C C2 PEG . . . D 4 62.454 -71.137 13.612 1 92.78 ? C2 PEG 702 A 1 HETATM 4 O O2 PEG . . . D 4 61.709 -72.335 13.834 1 100.72 ? O2 PEG 702 A 1 HETATM 5 C C3 PEG . . . D 4 61.357 -73.026 12.636 1 98.45 ? C3 PEG 702 A 1 HETATM 6 C C4 PEG . . . D 4 60.34 -74.092 12.935 1 96.11 ? C4 PEG 702 A 1 HETATM 7 O O4 PEG . . . D 4 60.822 -75.059 13.855 1 90.55 ? O4 PEG 702 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #