data_7BYN # _model_server_result.job_id J-6ZzQdLHOszDZWFUAS6aA _model_server_result.datetime_utc '2025-02-17 06:19:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7byn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":702}' # _entry.id 7BYN # _exptl.entry_id 7BYN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 391.464 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-phenyl-3,3-bis(pyridin-4-ylmethyl)indol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BYN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BYN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 567 A THR 283 1_555 J K K . A K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc2 A O THR 567 A THR 283 1_555 L K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.179 ? metalc ? metalc3 A O ILE 568 A ILE 284 1_555 J K K . A K 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc4 A O GLY 569 A GLY 285 1_555 K K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.15 ? metalc ? metalc5 A O TYR 570 A TYR 286 1_555 K K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc6 J K K . A K 702 1_555 B O THR 567 C THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc7 J K K . A K 702 1_555 B O ILE 568 C ILE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc8 J K K . A K 702 1_555 C O THR 567 E THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc9 J K K . A K 702 1_555 C O ILE 568 E ILE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? metalc ? metalc10 J K K . A K 702 1_555 D O THR 567 G THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? metalc ? metalc11 J K K . A K 702 1_555 D O ILE 568 G ILE 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.032 ? metalc ? metalc12 K K K . A K 703 1_555 B O GLY 569 C GLY 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.093 ? metalc ? metalc13 K K K . A K 703 1_555 B O TYR 570 C TYR 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc14 K K K . A K 703 1_555 C O GLY 569 E GLY 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc15 K K K . A K 703 1_555 C O TYR 570 E TYR 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc16 K K K . A K 703 1_555 D O GLY 569 G GLY 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.214 ? metalc ? metalc17 K K K . A K 703 1_555 D O TYR 570 G TYR 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? metalc ? metalc18 L K K . A K 704 1_555 B O THR 567 C THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc19 L K K . A K 704 1_555 C O THR 567 E THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? metalc ? metalc20 L K K . A K 704 1_555 C OG1 THR 567 E THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.451 ? metalc ? metalc21 L K K . A K 704 1_555 D O THR 567 G THR 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.25 ? # _chem_comp.formula 'C26 H21 N3 O' _chem_comp.formula_weight 391.464 _chem_comp.id FCC _chem_comp.mon_nstd_flag . _chem_comp.name 1-phenyl-3,3-bis(pyridin-4-ylmethyl)indol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Linopirdine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C08 C13 FCC sing 83 n n C08 C05 FCC sing 84 n n C11 C16 FCC doub 85 n y C11 C06 FCC sing 86 n y C07 C12 FCC sing 87 n n C07 C05 FCC sing 88 n n C16 C17 FCC sing 89 n y C13 C21 FCC doub 90 n y C13 C19 FCC sing 91 n y C21 C27 FCC sing 92 n y C12 C18 FCC doub 93 n y C12 C20 FCC sing 94 n y C05 C06 FCC sing 95 n n C05 C09 FCC sing 96 n n C19 C25 FCC doub 97 n y C18 C24 FCC sing 98 n y C06 C10 FCC doub 99 n y C27 N04 FCC doub 100 n y C20 C26 FCC doub 101 n y C25 N04 FCC sing 102 n y C24 N03 FCC doub 103 n y C26 N03 FCC sing 104 n y C17 C14 FCC doub 105 n y C09 O01 FCC doub 106 n n C09 N02 FCC sing 107 n n C10 C14 FCC sing 108 n y C10 N02 FCC sing 109 n n N02 C15 FCC sing 110 n n C15 C22 FCC doub 111 n y C15 C23 FCC sing 112 n y C22 C28 FCC sing 113 n y C23 C29 FCC doub 114 n y C28 C30 FCC doub 115 n y C29 C30 FCC sing 116 n y C17 H1 FCC sing 117 n n C20 H2 FCC sing 118 n n C21 H3 FCC sing 119 n n C22 H4 FCC sing 120 n n C24 H5 FCC sing 121 n n C26 H6 FCC sing 122 n n C28 H7 FCC sing 123 n n C07 H8 FCC sing 124 n n C07 H9 FCC sing 125 n n C08 H10 FCC sing 126 n n C08 H11 FCC sing 127 n n C11 H12 FCC sing 128 n n C14 H13 FCC sing 129 n n C16 H14 FCC sing 130 n n C18 H15 FCC sing 131 n n C19 H16 FCC sing 132 n n C23 H17 FCC sing 133 n n C25 H18 FCC sing 134 n n C27 H19 FCC sing 135 n n C29 H20 FCC sing 136 n n C30 H21 FCC sing 137 n n # _atom_sites.entry_id 7BYN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 PT5 A 1 701 701 PT5 PT5 . J 4 K A 1 702 3 K K . K 4 K A 1 703 1 K K . L 4 K A 1 704 4 K K . M 3 PT5 C 1 701 701 PT5 PT5 . N 5 FCC C 1 702 706 FCC LIG . O 3 PT5 E 1 701 701 PT5 PT5 . P 3 PT5 G 1 701 701 PT5 PT5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 FCC . . . N 5 175.413 175.443 190.542 1 104.07 ? C10 FCC 702 C 1 HETATM 2 C C13 FCC . . . N 5 175.319 172.114 188.552 1 104.07 ? C13 FCC 702 C 1 HETATM 3 C C15 FCC . . . N 5 174.683 174.137 192.829 1 104.07 ? C15 FCC 702 C 1 HETATM 4 C C17 FCC . . . N 5 176.983 177.191 189.891 1 104.07 ? C17 FCC 702 C 1 HETATM 5 C C20 FCC . . . N 5 170.395 176.024 189.263 1 104.07 ? C20 FCC 702 C 1 HETATM 6 C C21 FCC . . . N 5 176.69 172.377 188.615 1 104.07 ? C21 FCC 702 C 1 HETATM 7 C C22 FCC . . . N 5 173.776 173.239 193.441 1 104.07 ? C22 FCC 702 C 1 HETATM 8 C C24 FCC . . . N 5 171.604 178.433 189.586 1 104.07 ? C24 FCC 702 C 1 HETATM 9 C C26 FCC . . . N 5 169.714 177.159 189.729 1 104.07 ? C26 FCC 702 C 1 HETATM 10 C C28 FCC . . . N 5 173.799 172.921 194.811 1 104.07 ? C28 FCC 702 C 1 HETATM 11 C C05 FCC . . . N 5 173.924 174.328 188.963 1 104.07 ? C05 FCC 702 C 1 HETATM 12 C C06 FCC . . . N 5 175.005 175.374 189.159 1 104.07 ? C06 FCC 702 C 1 HETATM 13 C C07 FCC . . . N 5 172.521 174.852 188.426 1 104.07 ? C07 FCC 702 C 1 HETATM 14 C C08 FCC . . . N 5 174.333 173.144 188.067 1 104.07 ? C08 FCC 702 C 1 HETATM 15 C C09 FCC . . . N 5 173.769 173.803 190.451 1 104.07 ? C09 FCC 702 C 1 HETATM 16 C C11 FCC . . . N 5 175.592 176.201 188.215 1 104.07 ? C11 FCC 702 C 1 HETATM 17 C C12 FCC . . . N 5 171.759 176.084 188.937 1 104.07 ? C12 FCC 702 C 1 HETATM 18 C C14 FCC . . . N 5 176.402 176.362 190.868 1 104.07 ? C14 FCC 702 C 1 HETATM 19 C C16 FCC . . . N 5 176.59 177.121 188.57 1 104.07 ? C16 FCC 702 C 1 HETATM 20 C C18 FCC . . . N 5 172.355 177.342 189.114 1 104.07 ? C18 FCC 702 C 1 HETATM 21 C C19 FCC . . . N 5 174.899 170.845 188.96 1 104.07 ? C19 FCC 702 C 1 HETATM 22 C C23 FCC . . . N 5 175.614 174.678 193.748 1 104.07 ? C23 FCC 702 C 1 HETATM 23 C C25 FCC . . . N 5 175.84 169.911 189.404 1 104.07 ? C25 FCC 702 C 1 HETATM 24 C C27 FCC . . . N 5 177.561 171.381 189.074 1 104.07 ? C27 FCC 702 C 1 HETATM 25 C C29 FCC . . . N 5 175.636 174.359 195.115 1 104.07 ? C29 FCC 702 C 1 HETATM 26 C C30 FCC . . . N 5 174.729 173.473 195.678 1 104.07 ? C30 FCC 702 C 1 HETATM 27 N N02 FCC . . . N 5 174.671 174.49 191.359 1 104.07 ? N02 FCC 702 C 1 HETATM 28 N N03 FCC . . . N 5 170.291 178.368 189.898 1 104.07 ? N03 FCC 702 C 1 HETATM 29 N N04 FCC . . . N 5 177.168 170.152 189.471 1 104.07 ? N04 FCC 702 C 1 HETATM 30 O O01 FCC . . . N 5 173.006 172.954 190.764 1 104.07 ? O01 FCC 702 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 30 #