data_7BZU # _model_server_result.job_id 408zejs-oB9wgzYxhSejiA _model_server_result.datetime_utc '2024-11-13 06:54:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7bzu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 7BZU # _exptl.entry_id 7BZU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7BZU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BZU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 300-meric 300 'complete icosahedral assembly' 1 ? pentameric 5 'icosahedral asymmetric unit' 2 ? 25-meric 25 'icosahedral pentamer' 3 ? 30-meric 30 'icosahedral 23 hexamer' 4 ? pentameric 5 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 (1-60) A,B,C,D,E,F,G,H 2 1 A,B,C,D,E,F,G,H 3 (1-5) A,B,C,D,E,F,G,H 4 (1,2,6,10,23,24) A,B,C,D,E,F,G,H 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.507327 0.304355 0.806218 0.318972 0.802786 -0.503778 -0.800548 0.512741 0.310194 -426.8141 -162.56421 -5.45234 1 'point symmetry operation' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.49107 -0.303452 0.816558 -0.305325 0.817946 0.487587 -0.81586 -0.488755 0.309018 -1.25158 -0.14457 526.39759 3 'point symmetry operation' ? ? -0.332396 -0.79632 0.505359 -0.797477 0.523377 0.300177 -0.50353 -0.303235 -0.809015 428.01191 256.78385 690.15551 4 'point symmetry operation' ? ? -0.332396 -0.797477 -0.50353 -0.79632 0.523377 -0.303235 0.505359 0.300177 -0.809015 694.56292 415.71891 264.96588 5 'point symmetry operation' ? ? 0.49107 -0.305325 -0.81586 -0.303452 0.817946 -0.488755 0.816558 0.487587 0.309018 430.03701 257.01776 -161.57368 6 'point symmetry operation' ? ? 0.281753 -0.820947 -0.49665 -0.820947 -0.474194 0.318098 -0.49665 0.318098 -0.807559 536.77522 520.81438 524.4181 7 'point symmetry operation' ? ? 0.794213 -0.514249 -0.323689 -0.517883 -0.294219 -0.803263 0.317842 0.805595 -0.499993 275.10573 689.35659 99.89647 8 'point symmetry operation' ? ? 0.811112 -0.503428 0.297755 0.490866 0.309096 -0.814562 0.318039 0.806858 0.497827 103.79707 267.21134 -163.81311 9 'point symmetry operation' ? ? 0.309096 -0.803439 0.508866 0.811243 0.50199 0.299817 -0.496331 0.320142 0.806948 259.59199 -162.23099 97.72703 10 'point symmetry operation' ? ? -0.018066 -0.999677 0.017897 0.000498 0.017891 0.99984 -0.999837 0.018072 0.000175 527.1872 -5.49569 523.07731 11 'point symmetry operation' ? ? -0.796514 0.512132 -0.321382 0.512132 0.28893 -0.808851 -0.321382 -0.808851 -0.492416 424.33871 265.39717 691.5931 12 'point symmetry operation' ? ? -0.285308 0.817677 -0.500004 0.823184 0.476252 0.309115 0.490884 -0.323402 -0.808977 256.087 -161.06286 432.9056 13 'point symmetry operation' ? ? 0.018169 0.999772 0.011207 0.006635 -0.01133 0.999914 0.999813 -0.018094 -0.00684 -6.8749 0.55532 6.49428 14 'point symmetry operation' ? ? -0.305476 0.806768 0.505775 -0.809072 -0.499993 0.308885 0.502083 -0.314851 0.80547 -1.14259 526.90087 1.64509 15 'point symmetry operation' ? ? -0.808978 0.50539 0.300224 -0.496658 -0.314422 -0.808993 -0.31446 -0.803566 0.505367 265.36208 690.58213 425.05945 16 'point symmetry operation' ? ? -0.485239 0.308815 0.818032 0.308815 -0.814736 0.490753 0.818032 0.490753 0.299975 94.97708 266.59976 -160.40987 17 'point symmetry operation' ? ? -0.999975 0.000023 0.007134 0.000023 -0.999978 0.006562 0.007134 0.006562 0.999953 526.14986 524.66214 -3.59833 18 'point symmetry operation' ? ? -0.496885 0.299976 -0.814321 0.299976 -0.821143 -0.485529 -0.814321 -0.485529 0.318028 531.15692 528.2608 522.76465 19 'point symmetry operation' ? ? 0.328776 0.794148 -0.511111 0.794148 -0.525374 -0.305468 -0.511111 -0.305468 -0.803402 103.07868 272.42251 691.26333 20 'point symmetry operation' ? ? 0.335974 0.799611 0.497739 0.799611 -0.521415 0.297908 0.497739 0.297908 -0.814559 -166.49529 110.70709 269.03826 21 'point symmetry operation' ? ? -0.499668 -0.285461 0.817829 0.327174 0.812008 0.483322 -0.802053 0.509073 -0.312339 255.25537 -164.45022 424.09751 22 'point symmetry operation' ? ? -0.825447 -0.481584 -0.294472 -0.481584 0.328671 0.812436 -0.294472 0.812436 -0.503224 686.42504 89.44257 260.61302 23 'point symmetry operation' ? ? -0.018066 0.000498 -0.999837 -0.999677 0.017891 0.018072 0.017897 0.99984 0.000175 532.5186 517.66216 -4.03166 24 'point symmetry operation' ? ? 0.806703 0.494564 -0.323476 -0.511118 0.309155 -0.801986 -0.29663 0.812299 0.502177 6.22952 528.42363 -4.10657 25 'point symmetry operation' ? ? 0.509056 0.317832 0.799903 0.308921 0.799946 -0.514446 -0.803387 0.508988 0.309032 -165.12858 106.85499 260.49181 26 'point symmetry operation' ? ? -0.31261 0.805715 -0.503089 -0.814475 -0.499898 -0.294504 -0.488779 0.317689 0.812508 267.25789 687.53698 94.91161 27 'point symmetry operation' ? ? 0.010932 0.999781 -0.017872 -0.007059 -0.017795 -0.999817 -0.999915 0.011056 0.006863 2.70777 533.60239 523.1795 28 'point symmetry operation' ? ? -0.285308 0.823184 0.490884 0.817677 0.476252 -0.323402 -0.500004 0.309115 -0.808977 -6.85811 7.31267 528.04218 29 'point symmetry operation' ? ? -0.791937 0.519976 0.320095 0.519976 0.299487 0.799958 0.320095 0.799958 -0.50755 251.77997 -164.01767 102.77959 30 'point symmetry operation' ? ? -0.80881 0.509179 -0.294214 -0.488749 -0.303806 0.817818 0.327032 0.805257 0.494583 421.19298 256.38407 -164.90982 31 'point symmetry operation' ? ? -0.011036 -0.999876 -0.011233 -0.000074 0.011234 -0.999937 0.999939 -0.011034 -0.000198 533.07093 524.14929 2.85024 32 'point symmetry operation' ? ? 0.309032 -0.809006 -0.500009 0.812342 0.497935 -0.303581 0.494571 -0.312362 0.811067 527.31648 -2.21662 1.49596 33 'point symmetry operation' ? ? 0.806703 -0.511118 -0.29663 0.494564 0.309155 0.812299 -0.323476 -0.801986 0.502177 263.84323 -163.10975 427.86582 34 'point symmetry operation' ? ? 0.794213 -0.517883 0.317842 -0.514249 -0.294219 0.805595 -0.323689 -0.803263 -0.499993 106.76225 263.81873 692.73117 35 'point symmetry operation' ? ? 0.288823 -0.819952 0.494227 -0.819952 -0.478344 -0.314428 0.494227 -0.314428 -0.810478 273.15412 688.56817 430.05709 36 'point symmetry operation' ? ? 0.823314 0.479622 -0.303507 0.487375 -0.323344 0.811119 0.290893 -0.815727 -0.49997 0.50681 5.57526 533.74198 37 'point symmetry operation' ? ? 0.505484 0.290809 0.812352 -0.323698 -0.808811 0.490962 0.799816 -0.51113 -0.314706 -160.3583 431.98296 270.31286 38 'point symmetry operation' ? ? -0.503329 -0.312565 0.805583 -0.312565 -0.803297 -0.506968 0.805583 -0.506968 0.306626 266.58728 690.94622 103.72499 39 'point symmetry operation' ? ? -0.808978 -0.496657 -0.31446 0.50539 -0.314422 -0.803566 0.300224 -0.808993 0.505367 691.31927 424.58661 264.19715 40 'point symmetry operation' ? ? 0.010932 -0.007059 -0.999915 0.999781 -0.017795 0.011056 -0.017872 -0.999817 0.006863 526.87249 1.00406 529.96226 41 'point symmetry operation' ? ? -0.499668 0.327174 -0.802053 -0.285461 0.812008 0.509073 0.817829 0.483322 -0.312339 521.49547 -9.49642 3.18967 42 'point symmetry operation' ? ? 0.309096 0.811243 -0.496331 -0.803439 0.50199 0.320142 0.508866 0.299817 0.806948 99.8749 258.71834 -162.3185 43 'point symmetry operation' ? ? 0.309032 0.812342 0.494571 -0.809006 0.497935 -0.312362 -0.500009 -0.303581 0.811067 -161.89673 428.17318 261.77663 44 'point symmetry operation' ? ? -0.499772 0.328952 0.801261 -0.294467 0.805447 -0.514339 -0.814565 -0.492997 -0.305674 97.94008 264.68727 689.39002 45 'point symmetry operation' ? ? -0.999576 0.029101 -0.000097 0.029101 0.999554 -0.006664 -0.000097 -0.006664 -0.999978 520.29968 -5.80741 529.57448 46 'point symmetry operation' ? ? -0.011036 -0.000074 0.999939 -0.999876 0.011234 -0.011034 -0.011233 -0.999937 -0.000198 3.07175 527.14795 530.10453 47 'point symmetry operation' ? ? -0.821207 -0.485437 0.299951 -0.485437 0.317996 -0.814389 0.299951 -0.814389 -0.496789 529.45111 522.58933 530.15877 48 'point symmetry operation' ? ? -0.499772 -0.294467 -0.814565 0.328952 0.805447 -0.492997 0.801261 -0.514339 -0.305674 688.4427 94.45847 268.39236 49 'point symmetry operation' ? ? 0.509056 0.308921 -0.803387 0.317832 0.799946 0.508988 0.799903 -0.514446 0.309032 260.32555 -165.58234 106.55759 50 'point symmetry operation' ? ? 0.811112 0.490866 0.318039 -0.503428 0.309096 0.806858 0.297755 -0.814562 0.497827 -163.257 101.83446 268.3046 51 'point symmetry operation' ? ? 0.823314 0.487375 0.290893 0.479622 -0.323344 -0.815727 -0.303507 0.811119 -0.49997 -158.39631 436.94765 262.48657 52 'point symmetry operation' ? ? 0.018169 0.006635 0.999813 0.999772 -0.01133 -0.018094 0.011207 0.999914 -0.00684 -6.37184 6.99713 -0.4338 53 'point symmetry operation' ? ? -0.80881 -0.488749 0.327032 0.509179 -0.303806 0.805257 -0.294214 0.817818 0.494583 519.90357 -3.77692 -4.19284 54 'point symmetry operation' ? ? -0.514767 -0.314174 -0.79769 -0.314174 -0.796581 0.516481 -0.79769 0.516481 0.311349 693.13518 419.51488 256.40431 55 'point symmetry operation' ? ? 0.493941 0.289104 -0.820025 -0.332442 -0.808657 -0.485342 -0.803433 0.512341 -0.303319 273.9228 691.89764 421.22125 56 'point symmetry operation' ? ? -0.31261 -0.814475 -0.488779 0.805715 -0.499898 0.317689 -0.503089 -0.294504 0.812508 689.9201 98.21212 259.82056 57 'point symmetry operation' ? ? 0.493941 -0.332442 -0.803433 0.289104 -0.808657 0.512341 -0.820025 -0.485342 -0.303319 433.13683 264.50651 688.19487 58 'point symmetry operation' ? ? 0.999551 -0.029125 -0.007037 -0.029125 -0.999576 0.000103 -0.007037 0.000103 -0.999975 9.64146 533.95657 529.62519 59 'point symmetry operation' ? ? 0.505484 -0.323698 0.799816 0.290809 -0.808811 -0.51113 0.812352 0.490962 -0.314706 4.6902 534.19149 3.24942 60 'point symmetry operation' ? ? -0.305476 -0.809072 0.502083 0.806768 -0.499993 -0.314851 0.505775 0.308885 0.80547 425.12551 264.88661 -163.499 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 12 E CYS 32 1_555 E SG CYS 94 E CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 E SG CYS 35 E CYS 55 1_555 E SG CYS 75 E CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 E SG CYS 64 E CYS 84 1_555 E SG CYS 89 E CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 E SG CYS 102 E CYS 122 1_555 E SG CYS 166 E CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 E SG CYS 127 E CYS 147 1_555 E SG CYS 147 E CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 E SG CYS 131 E CYS 151 1_555 E SG CYS 149 E CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 E SG CYS 170 E CYS 190 1_555 E SG CYS 178 E CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 E SG CYS 194 E CYS 214 1_555 E SG CYS 220 E CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 E ND2 ASN 25 E ASN 45 1_555 F C1 NAG . E NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 E ND2 ASN 39 E ASN 59 1_555 G C1 NAG . E NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 E ND2 ASN 273 E ASN 293 1_555 H C1 NAG . E NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7BZU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG E 1 401 1324 NAG NAG . G 6 NAG E 1 402 1325 NAG NAG . H 6 NAG E 1 403 1326 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 6 141.566 392.112 282.122 1 84.38 ? C1 NAG 401 E 1 HETATM 2 C C2 NAG . . . F 6 141.815 392.686 280.729 1 84.38 ? C2 NAG 401 E 1 HETATM 3 C C3 NAG . . . F 6 141.724 394.208 280.764 1 84.38 ? C3 NAG 401 E 1 HETATM 4 C C4 NAG . . . F 6 140.396 394.648 281.366 1 84.38 ? C4 NAG 401 E 1 HETATM 5 C C5 NAG . . . F 6 140.187 393.994 282.73 1 84.38 ? C5 NAG 401 E 1 HETATM 6 C C6 NAG . . . F 6 138.826 394.283 283.319 1 84.38 ? C6 NAG 401 E 1 HETATM 7 C C7 NAG . . . F 6 143.269 391.181 279.444 1 84.38 ? C7 NAG 401 E 1 HETATM 8 C C8 NAG . . . F 6 144.671 390.895 279 1 84.38 ? C8 NAG 401 E 1 HETATM 9 N N2 NAG . . . F 6 143.107 392.263 280.212 1 84.38 ? N2 NAG 401 E 1 HETATM 10 O O3 NAG . . . F 6 141.856 394.721 279.443 1 84.38 ? O3 NAG 401 E 1 HETATM 11 O O4 NAG . . . F 6 140.377 396.063 281.517 1 84.38 ? O4 NAG 401 E 1 HETATM 12 O O5 NAG . . . F 6 140.292 392.567 282.611 1 84.38 ? O5 NAG 401 E 1 HETATM 13 O O6 NAG . . . F 6 138.911 394.608 284.699 1 84.38 ? O6 NAG 401 E 1 HETATM 14 O O7 NAG . . . F 6 142.326 390.464 279.124 1 84.38 ? O7 NAG 401 E 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #