data_7C2I # _model_server_result.job_id 6ui_ZHj3Jn6N-JV0ic0QqQ _model_server_result.datetime_utc '2024-11-13 15:48:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7c2i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7C2I # _exptl.entry_id 7C2I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7C2I _cell.length_a 167.817 _cell.length_b 167.817 _cell.length_c 51.571 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7C2I _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 79 B CYS 74 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc2 B SG CYS 82 B CYS 77 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc3 B NE2 HIS 88 B HIS 83 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc4 B SG CYS 95 B CYS 90 1_555 E ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc5 B SG CYS 122 B CYS 117 1_555 D ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc6 B SG CYS 125 B CYS 120 1_555 D ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc7 B SG CYS 133 B CYS 128 1_555 D ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc8 B SG CYS 135 B CYS 130 1_555 D ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 7C2I _atom_sites.fract_transf_matrix[1][1] 0.005959 _atom_sites.fract_transf_matrix[1][2] 0.00344 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006881 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAM A 1 301 310 SAM SAM . D 4 ZN B 1 201 140 ZN ZN . E 4 ZN B 1 202 141 ZN ZN . F 5 HOH A 1 401 38 HOH HOH . F 5 HOH A 2 402 22 HOH HOH . F 5 HOH A 3 403 74 HOH HOH . F 5 HOH A 4 404 149 HOH HOH . F 5 HOH A 5 405 103 HOH HOH . F 5 HOH A 6 406 93 HOH HOH . F 5 HOH A 7 407 43 HOH HOH . F 5 HOH A 8 408 101 HOH HOH . F 5 HOH A 9 409 30 HOH HOH . F 5 HOH A 10 410 41 HOH HOH . F 5 HOH A 11 411 51 HOH HOH . F 5 HOH A 12 412 60 HOH HOH . F 5 HOH A 13 413 66 HOH HOH . F 5 HOH A 14 414 65 HOH HOH . F 5 HOH A 15 415 144 HOH HOH . F 5 HOH A 16 416 47 HOH HOH . F 5 HOH A 17 417 8 HOH HOH . F 5 HOH A 18 418 124 HOH HOH . F 5 HOH A 19 419 56 HOH HOH . F 5 HOH A 20 420 79 HOH HOH . F 5 HOH A 21 421 24 HOH HOH . F 5 HOH A 22 422 91 HOH HOH . F 5 HOH A 23 423 57 HOH HOH . F 5 HOH A 24 424 49 HOH HOH . F 5 HOH A 25 425 18 HOH HOH . F 5 HOH A 26 426 109 HOH HOH . F 5 HOH A 27 427 36 HOH HOH . F 5 HOH A 28 428 6 HOH HOH . F 5 HOH A 29 429 9 HOH HOH . F 5 HOH A 30 430 28 HOH HOH . F 5 HOH A 31 431 59 HOH HOH . F 5 HOH A 32 432 133 HOH HOH . F 5 HOH A 33 433 40 HOH HOH . F 5 HOH A 34 434 111 HOH HOH . F 5 HOH A 35 435 102 HOH HOH . F 5 HOH A 36 436 15 HOH HOH . F 5 HOH A 37 437 33 HOH HOH . F 5 HOH A 38 438 44 HOH HOH . F 5 HOH A 39 439 58 HOH HOH . F 5 HOH A 40 440 70 HOH HOH . F 5 HOH A 41 441 117 HOH HOH . F 5 HOH A 42 442 110 HOH HOH . F 5 HOH A 43 443 126 HOH HOH . F 5 HOH A 44 444 108 HOH HOH . F 5 HOH A 45 445 92 HOH HOH . F 5 HOH A 46 446 2 HOH HOH . F 5 HOH A 47 447 21 HOH HOH . F 5 HOH A 48 448 14 HOH HOH . F 5 HOH A 49 449 89 HOH HOH . F 5 HOH A 50 450 42 HOH HOH . F 5 HOH A 51 451 150 HOH HOH . F 5 HOH A 52 452 3 HOH HOH . F 5 HOH A 53 453 125 HOH HOH . F 5 HOH A 54 454 26 HOH HOH . F 5 HOH A 55 455 48 HOH HOH . F 5 HOH A 56 456 80 HOH HOH . F 5 HOH A 57 457 5 HOH HOH . F 5 HOH A 58 458 20 HOH HOH . F 5 HOH A 59 459 13 HOH HOH . F 5 HOH A 60 460 12 HOH HOH . F 5 HOH A 61 461 39 HOH HOH . F 5 HOH A 62 462 162 HOH HOH . F 5 HOH A 63 463 141 HOH HOH . F 5 HOH A 64 464 100 HOH HOH . F 5 HOH A 65 465 86 HOH HOH . F 5 HOH A 66 466 32 HOH HOH . F 5 HOH A 67 467 62 HOH HOH . F 5 HOH A 68 468 53 HOH HOH . F 5 HOH A 69 469 160 HOH HOH . F 5 HOH A 70 470 146 HOH HOH . F 5 HOH A 71 471 114 HOH HOH . F 5 HOH A 72 472 34 HOH HOH . F 5 HOH A 73 473 164 HOH HOH . F 5 HOH A 74 474 159 HOH HOH . F 5 HOH A 75 475 152 HOH HOH . F 5 HOH A 76 476 161 HOH HOH . F 5 HOH A 77 477 46 HOH HOH . F 5 HOH A 78 478 107 HOH HOH . F 5 HOH A 79 479 64 HOH HOH . F 5 HOH A 80 480 77 HOH HOH . F 5 HOH A 81 481 87 HOH HOH . F 5 HOH A 82 482 120 HOH HOH . F 5 HOH A 83 483 129 HOH HOH . F 5 HOH A 84 484 98 HOH HOH . F 5 HOH A 85 485 25 HOH HOH . F 5 HOH A 86 486 37 HOH HOH . F 5 HOH A 87 487 134 HOH HOH . F 5 HOH A 88 488 35 HOH HOH . F 5 HOH A 89 489 115 HOH HOH . F 5 HOH A 90 490 94 HOH HOH . F 5 HOH A 91 491 154 HOH HOH . F 5 HOH A 92 492 106 HOH HOH . F 5 HOH A 93 493 75 HOH HOH . F 5 HOH A 94 494 121 HOH HOH . F 5 HOH A 95 495 84 HOH HOH . F 5 HOH A 96 496 68 HOH HOH . F 5 HOH A 97 497 147 HOH HOH . F 5 HOH A 98 498 123 HOH HOH . F 5 HOH A 99 499 16 HOH HOH . F 5 HOH A 100 500 55 HOH HOH . F 5 HOH A 101 501 136 HOH HOH . F 5 HOH A 102 502 153 HOH HOH . F 5 HOH A 103 503 105 HOH HOH . F 5 HOH A 104 504 131 HOH HOH . F 5 HOH A 105 505 163 HOH HOH . F 5 HOH A 106 506 88 HOH HOH . F 5 HOH A 107 507 82 HOH HOH . F 5 HOH A 108 508 7 HOH HOH . F 5 HOH A 109 509 139 HOH HOH . F 5 HOH A 110 510 142 HOH HOH . F 5 HOH A 111 511 151 HOH HOH . F 5 HOH A 112 512 10 HOH HOH . F 5 HOH A 113 513 69 HOH HOH . F 5 HOH A 114 514 73 HOH HOH . F 5 HOH A 115 515 63 HOH HOH . F 5 HOH A 116 516 76 HOH HOH . F 5 HOH A 117 517 118 HOH HOH . F 5 HOH A 118 518 61 HOH HOH . F 5 HOH A 119 519 113 HOH HOH . F 5 HOH A 120 520 45 HOH HOH . F 5 HOH A 121 521 116 HOH HOH . F 5 HOH A 122 522 19 HOH HOH . F 5 HOH A 123 523 17 HOH HOH . F 5 HOH A 124 524 132 HOH HOH . F 5 HOH A 125 525 97 HOH HOH . F 5 HOH A 126 526 1 HOH HOH . F 5 HOH A 127 527 112 HOH HOH . F 5 HOH A 128 528 81 HOH HOH . F 5 HOH A 129 529 71 HOH HOH . F 5 HOH A 130 530 119 HOH HOH . F 5 HOH A 131 531 4 HOH HOH . F 5 HOH A 132 532 140 HOH HOH . F 5 HOH A 133 533 138 HOH HOH . F 5 HOH A 134 534 155 HOH HOH . F 5 HOH A 135 535 143 HOH HOH . G 5 HOH B 1 301 157 HOH HOH . G 5 HOH B 2 302 145 HOH HOH . G 5 HOH B 3 303 127 HOH HOH . G 5 HOH B 4 304 148 HOH HOH . G 5 HOH B 5 305 83 HOH HOH . G 5 HOH B 6 306 85 HOH HOH . G 5 HOH B 7 307 11 HOH HOH . G 5 HOH B 8 308 50 HOH HOH . G 5 HOH B 9 309 158 HOH HOH . G 5 HOH B 10 310 67 HOH HOH . G 5 HOH B 11 311 27 HOH HOH . G 5 HOH B 12 312 96 HOH HOH . G 5 HOH B 13 313 31 HOH HOH . G 5 HOH B 14 314 90 HOH HOH . G 5 HOH B 15 315 104 HOH HOH . G 5 HOH B 16 316 137 HOH HOH . G 5 HOH B 17 317 54 HOH HOH . G 5 HOH B 18 318 29 HOH HOH . G 5 HOH B 19 319 72 HOH HOH . G 5 HOH B 20 320 52 HOH HOH . G 5 HOH B 21 321 135 HOH HOH . G 5 HOH B 22 322 122 HOH HOH . G 5 HOH B 23 323 23 HOH HOH . G 5 HOH B 24 324 95 HOH HOH . G 5 HOH B 25 325 99 HOH HOH . G 5 HOH B 26 326 128 HOH HOH . G 5 HOH B 27 327 156 HOH HOH . G 5 HOH B 28 328 130 HOH HOH . G 5 HOH B 29 329 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 59.488 -64.682 1.659 1 23.96 ? N SAM 301 A 1 HETATM 2 C CA SAM . . . C 3 59.772 -66.045 1.225 1 21.59 ? CA SAM 301 A 1 HETATM 3 C C SAM . . . C 3 61.004 -66.598 1.89 1 20.34 ? C SAM 301 A 1 HETATM 4 O O SAM . . . C 3 61.359 -66.145 2.951 1 21.63 ? O SAM 301 A 1 HETATM 5 O OXT SAM . . . C 3 61.636 -67.512 1.392 1 20.69 ? OXT SAM 301 A 1 HETATM 6 C CB SAM . . . C 3 59.88 -66.187 -0.282 1 20.85 ? CB SAM 301 A 1 HETATM 7 C CG SAM . . . C 3 58.684 -65.575 -0.974 1 23.4 ? CG SAM 301 A 1 HETATM 8 S SD SAM . . . C 3 58.648 -65.866 -2.747 1 24.77 ? SD SAM 301 A 1 HETATM 9 C CE SAM . . . C 3 59.774 -64.607 -3.369 1 29.69 ? CE SAM 301 A 1 HETATM 10 C C5' SAM . . . C 3 57.077 -65.062 -3.159 1 21.1 ? C5' SAM 301 A 1 HETATM 11 C C4' SAM . . . C 3 55.817 -65.635 -2.524 1 21.09 ? C4' SAM 301 A 1 HETATM 12 O O4' SAM . . . C 3 54.759 -64.739 -2.756 1 22.7 ? O4' SAM 301 A 1 HETATM 13 C C3' SAM . . . C 3 55.358 -66.99 -3.067 1 21.43 ? C3' SAM 301 A 1 HETATM 14 O O3' SAM . . . C 3 55.439 -67.973 -2.072 1 22.52 ? O3' SAM 301 A 1 HETATM 15 C C2' SAM . . . C 3 53.917 -66.767 -3.492 1 21.26 ? C2' SAM 301 A 1 HETATM 16 O O2' SAM . . . C 3 53.028 -67.801 -3.155 1 25.49 ? O2' SAM 301 A 1 HETATM 17 C C1' SAM . . . C 3 53.566 -65.48 -2.774 1 22.17 ? C1' SAM 301 A 1 HETATM 18 N N9 SAM . . . C 3 52.465 -64.803 -3.46 1 22.95 ? N9 SAM 301 A 1 HETATM 19 C C8 SAM . . . C 3 52.448 -64.321 -4.729 1 21.18 ? C8 SAM 301 A 1 HETATM 20 N N7 SAM . . . C 3 51.233 -63.789 -4.95 1 22.83 ? N7 SAM 301 A 1 HETATM 21 C C5 SAM . . . C 3 50.468 -63.934 -3.856 1 25.14 ? C5 SAM 301 A 1 HETATM 22 C C6 SAM . . . C 3 49.156 -63.576 -3.546 1 26.81 ? C6 SAM 301 A 1 HETATM 23 N N6 SAM . . . C 3 48.364 -62.965 -4.419 1 24.26 ? N6 SAM 301 A 1 HETATM 24 N N1 SAM . . . C 3 48.67 -63.867 -2.297 1 25.16 ? N1 SAM 301 A 1 HETATM 25 C C2 SAM . . . C 3 49.465 -64.505 -1.383 1 25.9 ? C2 SAM 301 A 1 HETATM 26 N N3 SAM . . . C 3 50.751 -64.86 -1.696 1 23.8 ? N3 SAM 301 A 1 HETATM 27 C C4 SAM . . . C 3 51.243 -64.573 -2.911 1 24.31 ? C4 SAM 301 A 1 # _model_server_stats.io_time_ms 98 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #